Spg015419 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015419
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CCHC-type domain-containing protein
Location	scaffold10: 10419672 .. 10425320 (-)
RNA-Seq Expression	Spg015419
Synteny	Spg015419

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGACACACTATCTATGTTGCCCACATAGACATGGTGCAGATAGCATATCCCAATTTACGCCCGTAATATCCTGACAACCAGATTGTGTGTTAAGTCAAACTCCTATTCAGCTCCGTTGTAGGTGGCTTTAGGAAACTAAGCCAGCTAGAGATCTATTTCTAGGGCTAGCTGAAACTTAGATAAATATTAAACCCGGGACTTTCCTTGGAACATTTTCTCTTGTCATCTATTGTGGTTTCATGGTTGGATTAAATTGGTTGGAAGTTATTAATTTAGGAACAAAGAAGAAAGGAAAAGAAAAGAAAAGAATGGAAATAAAGAAGAAAGAAAAGGAAAAGGAAAAGAAATCAGCAAAACAAAAGAAAAAAAAAAAAGAGAAAATCAGTGGGAATGGACAGCACAAAAACCCACCACCGACTAGACTTTTTATCAGCCCATTTTCATTTCATTTCTCATCTTTTTCCATCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTGTGAGCTACACAGAAGGGAATAAGAGGTGAGATTTGAATTTCTTGAAAGTTAGTTCATTTGCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAATCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTGCTACAACTTTCATGAAGATTTCGTGAGCCAACAATGACTTTAAGTAGGGTTAATTTCAGGAGTTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCGTTTTCATGTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTCGGTTACGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAGATGGTTTCCAACGGTTGTTCATGTTTAGATGTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAACGATTTCAAGCATAAGTTTTGAGCTCAGATTTTCTAACGAGGTTTATATATGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTTCAGTTTTTCACGAGCAAACTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTCCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCTTGCCCTACACAACGTAAATCGGTCATGCTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTACGAGATGTTTTGGAAAGCCTTTATTATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTTCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTTTGTTCATAATGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTCGTATATGTTTTTGGTTGTGACATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGACGGCACCTCGTGTTTGTGGGAAGTTTTTTTCAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGCTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACACCATCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGGGGGTGTGACATAAATAATACTCACGACTCTTAAAACCCTAATGGTTCCAGTCCTGTTTCTAGGATGCAAGAAGTCAAAGTCCTATTTCTAGGATCTTTTCCACTATTGATTTGCGAACCCACGCCTTTAACTCCAATCTTTCGGCCTTCAGTTAAATGCAAACTATGCTAACCTGAGTGATTAGTTTAAGCTAACATTTAAACCTTAATTTCAACAAAAACAAACAATGCTAGAGGGAGCAAGGTTGCTTTTGCATAGGCGTGACTTTCTTCTATTGAAGGAATCCACATATTTGAACCCCTATTAAAGAATGAACTGGGTACAAAAGGTTAACTTACAACCAAAAGTAAATGAAAACAAATAAAAAACGCTGGAAATTAAAGAGTACAAAGCATAAAATAAAGATAAGACTGAACTAAGGATCTCTCACTCTCTATCTAACTTGTAAACCTGAGACTTTCCTTGGATTATTTGCTCTTGTCATATATTGTAGGCATTTGGAGTAAAGTTGTTGTTTCATTGTTGAAGAAAAATGTCAAAGCTTTTGGTTGAAGTTGTTTTTCATCATTTTTTAATTTATTAATTTAGGAAGAAAAAAAGAAAAGAAAGGAAATAAGTAAAAAGAAAAGAAAAGAAAGGAAAAGAGGAAAAGGATTGTTGGTGCTAAGTGGTTTAAAGGGAAGAAACCCACTGCTTAAAGTCATACCAGCCATTTTCTTTTTCATTTCCCATCAAAATTTCAGAACCATTTGAGAGAGAGCTTGAAGGAAGAAGAAGAGGAAGTATACTGGAGTTTTGAGGTTGAAGATGAGAGGGGAAAGCTTATGCAAGTGCAACCATGGCAGAATCTTTGTTCAATCTGCCCATCTCTTGTTTTTAATTCGGATTGAGCTACACAAGAAGAATTAAGAGATGAGGCCTAACTTTCTTGAAATTTAATTCATTTTCTAACAAATTTCATGAAGAAAGCTTGAACTAATTCTGATGTTAAGTTAATGAATTTTTAAGAGAAAACCAGAGCACAGAATTTTCGCGCAAATCTGAAGGGTCTCTGGTTTTTCGAACGTCCCAAAGTGTACAGATTGAACTAAAAGCTCCATTTGGTATGGTTGGAAAGCTTATTTAATTTCCTATAACTTTCATGCAGAATTCGTGAGCCACAAATGACTAGAAGTAGGTTTAAATGCAGGGGAAAAGTAGAGGGTAGTAGAAAACGCGAATTTGGAATAGTTGTGTTCAGGGGGGTTTCTGGACAAATCCATTGGGAATCTCATTTTCATTCCTTCAATAAAGTTGTAGAGGGTTCACAAATGAAGAGTTTTATATAAAGTAAATTAATGTTGGTCAAGTATCGAGGAAGGTATGAGTGTTTGAATTTAGGGTATTGAATCTGGAAAATTCTTGGAAAAGTGTGGAATGTGATTTTATTTCTAAAGTTTAGAATTCATGAGCATATAAAGACAAGACTATTTAAGGTTCTAATGCTCGGTTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGCCGAGTCTGGAGGCCAGGGAACTAGCCCAAGGATGTGAGTGACAAAACAAATTTCGAAAATGATTTCTAAACTGTTATTTATGATTAAATGTTTTACATGCTTGAATCTGAACTTATGAATAATACATGATTTCTACGAATGGTTTCAAGCATAAGTTTCGAGCTTAGATTTTCTAATGTTCTGAAAAGTAGTAGAAACGATATCATTTTAAGCAAAGTATGTATTAGCGAGTATTGTTTAAAGATTTTCAGTTTTCCACGAACAAGTTGAGTAAGCATGAGTTTTACGAAAGATAAAGATAAGTAGGCATGTTTTAATGTTTTCATCTGATTTTCTGAGACTTTTATTGACTACATGACTAAGATATTGAGTCCGAGGTTGTATGGTGTCGTGGGCACACAGGTTATATTACGTTGTTGACGTAGAGTGTACTCCGTGACAACGATGTTGTCATGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAATGTTGGGCGGGTCCCACTACATCGTAGAGCAAACGTTGGTCGTATTAGGCGTGCCCTACACAACGTAGATTTGTCATGTTAGTTAAAATGTTTAATATACTTGATATGCCTTGCTAGATTTTAATGACATACTTGCTGAGTATGTGAGAAAGTTGTTATCATTACACATTTATATTTAACACTTTGATTAAATAGATTTATATGTTTAAGGTTTATCATGTGTTCTTGTTTGCGGATTAACAGTTTTAAATTTAGTCACTCACTAGGCTTCATAGCTCACCCTTTCAAAATGTTTTCCCACTTTCCAGGTAGAGATTGAGCTCCTGATGCCTGATAAACTGCCATAGTCTGTTAAAAGCTCCCAAATCAATTTCCAGTATGTGGGTGGAGTTGTAAATTGAGTCTGTTTATATTGTAAATGTCTTGTAAGGATTCGATAGTTTACGGTTTGTGTAAGCTTTAGATGTTGTGGTTGTGTAAACCCTAGTTGGATATGTTCTTGGTTGTGATGTCTTTATCAGGTTTATTTTCCAAAGTGAGTTAAGTCAGGGCTGCGTTGCTTGTATGTCTAATGGTTATCAAGGTTCCGCTGTGTTGTGTTGCATGTAAAGTATTCCATAACTAAGATTAGCATGTTGATCAGGTTCAACGGTTCATGAAGGTCAACAAGTATCGTTAGAGGAGGACGTGGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCAAGCAGGTAGTTCGGGAGGGGGTGTGACATAGCTAGCTCTTGTCCTTTTTCAAGGAGAGACAAACCTTTCTCTTATTCTTCTTTCAAATAAAAGAGCCGACAGAAACTGAGGTATCCGGAACTCGGAGTGGTTTCAAGGTGAGAAGAGAGAACTAAAATATATCCAAAGGACGAAAACTCCAAGCACCGAGCTCTTCTTGCTTCATGCACCTTGGTCCCCTTTTATAGACCATGGAAGGTAAGGTTGGCTGTCGAGATTAGTGTGAGAAGGCCTTGGAAGGTAAGAATCCACGATCCTCGAAGATTCGATGCCGGATTGGGGATTTTCGGATGATTCTGTGCAAACCCCGCGAATCTCGATATTCTGTCGGAAAGCCCAGTTGCGGCCGCATCTCGGGCGCATTTTCCTCTGTGTTCTACTTTGACAATTTTGTCTACAGCATGGGGCTTCTTTCCTTATATGGCTTTGCGGGTGCAACTTGA

mRNA sequence

ATGGCTGAGACACACTATCTATGTTGCCCACATAGACATGGTGCAGATAGCATATCCCAATTTACGCCCAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAATCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAGATGGTTTCCAACGGTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACACCATCTTTCGGGCTAAGCTAAACCATTTGAGAGAGAGCTTGAAGGAAGAAGAAGAGGAAGTATACTGGAGTTTTGAGGTTGAAGATGAGAGGGGAAAGCTTATGCAAAAAACCAGAGCACAGAATTTTCGCGCAAATCTGAAGGGTCTCTGGCCAAGAGGAAATAGGCCGAGTCTGGAGGCCAGGGAACTAGCCCAAGGATTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAATGTTGGGCGGGTCCCACTACATCGTAGAGCAAACGTTGGTCGTATTAGGCGTGCCCTACACAACGTAGATTTGTCATGTTCAACGGTTCATGAAGGTCAACAAGTATCGTTAGAGGAGGACGTGGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCAAGCAGGTAAGAATCCACGATCCTCGAAGATTCGATGCCGGATTGGGGATTTTCGGATGATTCTGTGCAAACCCCGCGAATCTCGATATTCTGTCGGAAAGCCCAGTTGCGGCCGCATCTCGGGCGCATTTTCCTCTGTGTTCTACTTTGACAATTTTGTCTACAGCATGGGGCTTCTTTCCTTATATGGCTTTGCGGGTGCAACTTGA

Coding sequence (CDS)

ATGGCTGAGACACACTATCTATGTTGCCCACATAGACATGGTGCAGATAGCATATCCCAATTTACGCCCAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAATCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAGATGGTTTCCAACGGTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACACCATCTTTCGGGCTAAGCTAAACCATTTGAGAGAGAGCTTGAAGGAAGAAGAAGAGGAAGTATACTGGAGTTTTGAGGTTGAAGATGAGAGGGGAAAGCTTATGCAAAAAACCAGAGCACAGAATTTTCGCGCAAATCTGAAGGGTCTCTGGCCAAGAGGAAATAGGCCGAGTCTGGAGGCCAGGGAACTAGCCCAAGGATTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAATGTTGGGCGGGTCCCACTACATCGTAGAGCAAACGTTGGTCGTATTAGGCGTGCCCTACACAACGTAGATTTGTCATGTTCAACGGTTCATGAAGGTCAACAAGTATCGTTAGAGGAGGACGTGGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCAAGCAGGTAAGAATCCACGATCCTCGAAGATTCGATGCCGGATTGGGGATTTTCGGATGATTCTGTGCAAACCCCGCGAATCTCGATATTCTGTCGGAAAGCCCAGTTGCGGCCGCATCTCGGGCGCATTTTCCTCTGTGTTCTACTTTGACAATTTTGTCTACAGCATGGGGCTTCTTTCCTTATATGGCTTTGCGGGTGCAACTTGA

Protein sequence

MAETHYLCCPHRHGADSISQFTPSTGFSSKPGGSLVFSGVLSILGCTSRIRISIWPRGNRSSLQTGELDKTVSDKMNFEDGFQRLFNVQEGQRVSLEEDDVHWLHTIFRAKLNHLRESLKEEEEEVYWSFEVEDERGKLMQKTRAQNFRANLKGLWPRGNRPSLEARELAQGLLGGPHYDKDDGNVGRVPLHRRANVGRIRRALHNVDLSCSTVHEGQQVSLEEDVVRWLHAISRTKQAGKNPRSSKIRCRIGDFRMILCKPRESRYSVGKPSCGRISGAFSSVFYFDNFVYSMGLLSLYGFAGAT

Homology

[Close]

BLAST of Spg015419 vs. NCBI nr
Match: KAA0025163.1 (hypothetical protein E6C27_scaffold2405G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-07
Identity = 47/109 (43.12%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 25  TGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKT----------- 84
           TGFSSKPG  LVFS  LSIL    +++    +WPRGNRSSLQTGELDKT           
Sbjct: 17  TGFSSKPGEFLVFSDALSILEVHKSNQKLYLVWPRGNRSSLQTGELDKTVIFPLSTLSVL 76

Query: 85  ------VSDKMNFEDGFQRLFNVQEGQRVS---LEEDDVHWLHTIFRAK 112
                 V +++   D         E    S   +  DDV WLH +FRAK
Sbjct: 77  HDNDAVVENELPVPDTLPTSAESFESNSRSAGIVRGDDVCWLHAVFRAK 125

[Close]

BLAST of Spg015419 vs. NCBI nr
Match: KAA0054353.1 (uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12390.1 uncharacterized protein E5676_scaffold302G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-06
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 17 SISQFTPSTGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTV 73
          S  + T STGFSSKPGG LVFS  LSIL    +++    +WPRGN  SLQTGELDKTV
Sbjct: 23 SYPEETRSTGFSSKPGGFLVFSEALSILEVQKSNQKLYLVWPRGNSLSLQTGELDKTV 80

[Close]

BLAST of Spg015419 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-06
Identity = 59/175 (33.71%), Postives = 68/175 (38.86%), Query Frame = 0


Query: 24  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVSDKMNFEDG 83
           ST FSSKPG  LVFS  LSIL    +++    +WPRGNRSSLQTGELDKTV         
Sbjct: 486 STRFSSKPGEFLVFSDALSILEVQKSNQKLYLVWPRGNRSSLQTGELDKTV--------- 545

Query: 84  FQRLFNVQEGQRVSLEEDDVHWLHTIFRAKLNHLRESLKEEEEEVYWSFEVEDERGKLMQ 143
                      R SL             + L+ LR+                        
Sbjct: 546 -----------RFSL-------------STLSVLRD------------------------ 577

Query: 144 KTRAQNFRANLKGLWPRGNRPSLEARELAQGLLGGPHYDKDDGNVGRVPLHRRAN 197
                             N   + A        GGPHYDKDDGN  R PLHRR +
Sbjct: 606 ------------------NDAVVSA--------GGPHYDKDDGNAVRAPLHRRTS 577

[Close]

BLAST of Spg015419 vs. NCBI nr
Match: TYK27997.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-06
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 24  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS 74
           STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+S
Sbjct: 154 STGFSSKPGGFLVFSDALSILEVHKSNQKLYLIWPRENRPSLQTGELDKTLS 205

[Close]

BLAST of Spg015419 vs. NCBI nr
Match: KAA0066850.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 4.6e-06
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 24  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS 74
           STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+S
Sbjct: 168 STGFSSKPGGFLVFSDALSILEVHKSNQKLYLIWPRENRPSLQTGELDKTLS 219

[Close]

BLAST of Spg015419 vs. ExPASy TrEMBL
Match: A0A5A7SKG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2405G00100 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-08
Identity = 47/109 (43.12%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 25  TGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKT----------- 84
           TGFSSKPG  LVFS  LSIL    +++    +WPRGNRSSLQTGELDKT           
Sbjct: 17  TGFSSKPGEFLVFSDALSILEVHKSNQKLYLVWPRGNRSSLQTGELDKTVIFPLSTLSVL 76

Query: 85  ------VSDKMNFEDGFQRLFNVQEGQRVS---LEEDDVHWLHTIFRAK 112
                 V +++   D         E    S   +  DDV WLH +FRAK
Sbjct: 77  HDNDAVVENELPVPDTLPTSAESFESNSRSAGIVRGDDVCWLHAVFRAK 125

[Close]

BLAST of Spg015419 vs. ExPASy TrEMBL
Match: A0A5A7UEC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001720 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 17 SISQFTPSTGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTV 73
          S  + T STGFSSKPGG LVFS  LSIL    +++    +WPRGN  SLQTGELDKTV
Sbjct: 23 SYPEETRSTGFSSKPGGFLVFSEALSILEVQKSNQKLYLVWPRGNSLSLQTGELDKTV 80

[Close]

BLAST of Spg015419 vs. ExPASy TrEMBL
Match: A0A5A7VI26 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002210 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 24  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS 74
           STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+S
Sbjct: 168 STGFSSKPGGFLVFSDALSILEVHKSNQKLYLIWPRENRPSLQTGELDKTLS 219

[Close]

BLAST of Spg015419 vs. ExPASy TrEMBL
Match: A0A5D3DW05 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002130 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 24  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVS 74
           STGFSSKPGG LVFS  LSIL    +++    IWPR NR SLQTGELDKT+S
Sbjct: 154 STGFSSKPGGFLVFSDALSILEVHKSNQKLYLIWPRENRPSLQTGELDKTLS 205

[Close]

BLAST of Spg015419 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-06
Identity = 59/175 (33.71%), Postives = 68/175 (38.86%), Query Frame = 0


Query: 24  STGFSSKPGGSLVFSGVLSILGC--TSRIRISIWPRGNRSSLQTGELDKTVSDKMNFEDG 83
           ST FSSKPG  LVFS  LSIL    +++    +WPRGNRSSLQTGELDKTV         
Sbjct: 486 STRFSSKPGEFLVFSDALSILEVQKSNQKLYLVWPRGNRSSLQTGELDKTV--------- 545

Query: 84  FQRLFNVQEGQRVSLEEDDVHWLHTIFRAKLNHLRESLKEEEEEVYWSFEVEDERGKLMQ 143
                      R SL             + L+ LR+                        
Sbjct: 546 -----------RFSL-------------STLSVLRD------------------------ 577

Query: 144 KTRAQNFRANLKGLWPRGNRPSLEARELAQGLLGGPHYDKDDGNVGRVPLHRRAN 197
                             N   + A        GGPHYDKDDGN  R PLHRR +
Sbjct: 606 ------------------NDAVVSA--------GGPHYDKDDGNAVRAPLHRRTS 577

The following BLAST results are available for this feature:

BLAST of Spg015419 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025163.1	1.9e-07	43.12	hypothetical protein E6C27_scaffold2405G00100 [Cucumis melo var. makuwa]	[more]
KAA0054353.1	2.7e-06	62.07	uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0065516.1	4.6e-06	33.71	uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]	[more]
TYK27997.1	4.6e-06	67.31	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066850.1	4.6e-06	67.31	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg015419 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015419 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SKG8	9.1e-08	43.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UEC1	1.3e-06	62.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VI26	2.2e-06	67.31	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3DW05	2.2e-06	67.31	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7VGQ5	2.2e-06	33.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Spg015419 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 105..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015419.1	Spg015419.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding