Spg015393 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015393
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	scaffold10: 12615402 .. 12617212 (-)
RNA-Seq Expression	Spg015393
Synteny	Spg015393

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATTAGCCCCAACATTTGTGTCGTTTGTGGTTTGAATTCTGAAGCTTTGGACCACTTATTCATTCACTGCCAGATGGCTCAACAATTGTGGTCCCTTCTTCATCAAGGATTAAACCTCAGCCTCCCTCTACCGTCCTCGGTGGTCTCTCTCCGTGAAGAGACTTTTGTTGTTAAAAGTAAATCTCAAAGGGGTTTTTTACATGTCAATCTCTTTGTCGCCATCATATGGAGCCTCTGGATTGAAAGAAATGATCGCATCTTTCGGGATAAAAAGCCCGACCTATCTATATTCTATGGGAGGATATTTTGTCTTTGGTTGCTTTATGGTCTTCAACTTCTAGGGTCTTCTCTAACTATAGTGCTTCGGACATTGCTCTTAATTGGAAGGCATTTCTTTAGCCTTTGTATGTTTCTCACATACGCAATAATATAAGTATCCTCTTTCTAAAAAATTCAATGGGTAAATGTAAAACCTACGTGAGTTACAATGGTTGGTCATATTCAGCTATAACTCTCATATTAAATGGTTTGATGACAAAGCAAAACTGAAATATAAGCTATCTTGTAAACCATCCATGGAGTAATGAATGACTTGGAGTAGCTTGAACTTGAGTTCCATAATTGAAGCTTAGTTTGTCTTGAATGAAAACTTGGAATGATACTTGACTTCATTAAATGCATCTCCACTTCATTGAATGCAACTTGAGTTCAAACTTCACCTTATTTAATGTAACTTTAGTTCAACTTAGTTCTTTGGGAAAAATATACTTTTGGTCCCTCAGGTTTGGGTTAAGTTACACTTTGGTCCCCGAGTTTTCAAACTCAACAAAAATACCCCTGAGGTTTGAGATAAGAAGCAATTTGGTCCCTGCCGTCCATTTTTCTGTTAAACCCTAACGGTAAGCTGACGTGGCACTATTATTTTAATTAAAAAAATAAAATTTTAATTTTTTAAAATAACAATATATAAAAATATTTAAAATATTATTATTTTATTATTGTTTTTTTAAATTCTTTCTCTCTCTTTCTTCTCCATCTTCTTTCTTCTCATCTTCTTTCTCCATCCATCTTCTTCCTTCCCCATCCCATCTTCTTCAGCTCCAGTGGCCGGCCGCCGCCGGCTGCCGGCAAACGGCAGCGGCTGCCAGATTTTTTTTTTTTTCCTTTTTTTTTTCCGTCATCCATTACCACTTTCATCGCAATCCCAAAATCTTCAAAATCAATTTACACTTTCCTTCTTCATCTTCTTGTCTCTTCTTCTTCCTCCCCCATTAATTCCCTACACGCAGCCCCATCTCAAAACATATGCAAGAACTCGTTGAAAAAATCAGCCCAAAACGGCCAATCGAAGAAGACGCCCTCGATGATTTTTCTTTCGTTTGTTTGAATCCAGATGGCTCTCCGATCAGTGCCGAAGAAGCCTTCGTTAACGGCCAGATTCGCCCCGTTTTTCCCATGTTTGATCCACGGATTTTGCCTGATGTAAACGAAACGACGCCGGTTCGAGTTCGACCCTAGTTGAAGAAGCTATTCGGAGGAATTAGTCTGTTCGACTGAGGATCGGACTAGGGCTTCGCCGGCGGAGTCGGAGCTGGGGAAGAAGAGCTATTCGACGAGGTTCTCGAAGCTGCTGAGGTTCGGGGAGAAGATTCGGCGGAGCAGCAGCGCGATGGGAAGGAGGCTTTGGTGTTTCTGAGAAGTGCTTCGTCGGGAAGCGGCGGAGAGAAGGCGAAAGGGAAGGCGAAAGGGAAGGGAGAGAAGCGGACGAAAGGGGAAACGACGTCGGATTGTCATGAGCGGCTTTAG

mRNA sequence

ATGATGATTAGCCCCAACATTTGTGTCGTTTGTGGTTTGAATTCTGAAGCTTTGGACCACTTATTCATTCACTGCCAGATGGCTCAACAATTGTGGTCCCTTCTTCATCAAGGATTAAACCTCAGCCTCCCTCTACCGTCCTCGGTGGTCTCTCTCCGTGAAGAGACTTTTGTTGTTAAAAGTAAATCTCAAAGGGGTTTTTTACATGTCAATCTCTTTGTCGCCATCATATGGAGCCTCTGGATTGAAAGAAATGATCGCATCTTTCGGGATAAAAAGCCCGACCTATCTATATTCTATGGGAGGATATTTTGTCTTTGGTTGCTTTATGGTCTTCAACTTCTAGGGTCTTCTCTAACTATAGGCTTCGCCGGCGGAGTCGGAGCTGGGGAAGAAGAGCTATTCGACGAGGTTCTCGAAGCTGCTGAGGTTCGGGGAGAAGATTCGGCGGAGCAGCAGCGCGATGGGAAGGAGGCTTTGGTGTTTCTGAGAAGTGCTTCGTCGGGAAGCGGCGGAGAGAAGGCGAAAGGGAAGGCGAAAGGGAAGGGAGAGAAGCGGACGAAAGGGGAAACGACGTCGGATTGTCATGAGCGGCTTTAG

Coding sequence (CDS)

ATGATGATTAGCCCCAACATTTGTGTCGTTTGTGGTTTGAATTCTGAAGCTTTGGACCACTTATTCATTCACTGCCAGATGGCTCAACAATTGTGGTCCCTTCTTCATCAAGGATTAAACCTCAGCCTCCCTCTACCGTCCTCGGTGGTCTCTCTCCGTGAAGAGACTTTTGTTGTTAAAAGTAAATCTCAAAGGGGTTTTTTACATGTCAATCTCTTTGTCGCCATCATATGGAGCCTCTGGATTGAAAGAAATGATCGCATCTTTCGGGATAAAAAGCCCGACCTATCTATATTCTATGGGAGGATATTTTGTCTTTGGTTGCTTTATGGTCTTCAACTTCTAGGGTCTTCTCTAACTATAGGCTTCGCCGGCGGAGTCGGAGCTGGGGAAGAAGAGCTATTCGACGAGGTTCTCGAAGCTGCTGAGGTTCGGGGAGAAGATTCGGCGGAGCAGCAGCGCGATGGGAAGGAGGCTTTGGTGTTTCTGAGAAGTGCTTCGTCGGGAAGCGGCGGAGAGAAGGCGAAAGGGAAGGCGAAAGGGAAGGGAGAGAAGCGGACGAAAGGGGAAACGACGTCGGATTGTCATGAGCGGCTTTAG

Protein sequence

MMISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYGRIFCLWLLYGLQLLGSSLTIGFAGGVGAGEEELFDEVLEAAEVRGEDSAEQQRDGKEALVFLRSASSGSGGEKAKGKAKGKGEKRTKGETTSDCHERL

Homology

[Close]

BLAST of Spg015393 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 3   ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSK 62
           +SPN C +C  + E ++HLFIHC  +QQLWS   Q L      P+ V SL +    +  K
Sbjct: 813 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIK 872

Query: 63  SQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD 96
           +Q+G +  N    ++W +W+ERN+RIF+ +K +
Sbjct: 873 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKE 904

[Close]

BLAST of Spg015393 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 3   ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSK 62
           +SPN C +C  + E ++HLFIHC  +QQLWS   Q L      P+ V SL +    +  K
Sbjct: 907 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIK 966

Query: 63  SQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD 96
           +Q+G +  N    ++W +W+ERN+RIF+ +K +
Sbjct: 967 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKE 998

[Close]

BLAST of Spg015393 vs. NCBI nr
Match: XP_030479135.1 (uncharacterized protein LOC115696374 [Cannabis sativa])

HSP 1 Score: 78.6 bits (192), Expect = 6.9e-11
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MMISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVK 60
           ++ISP  CV C  N E ++HLF+HC+ + +LWS+L +   L   LP SV  +      +K
Sbjct: 220 ILISPGWCVCCKSNGEEVEHLFLHCKFSSKLWSMLLEEFGLIWALPRSVPQMLMSK--IK 279

Query: 61  SKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYGRI 104
              ++  L     +A IW++W+ERN RIF D +    + + +I
Sbjct: 280 GSKRQDILWKTAVLATIWAIWLERNTRIFEDVENSAIVVWDKI 320

[Close]

BLAST of Spg015393 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.9e-11
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 3    ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSK 62
            +SPN C +C  + E ++HLFIHC  +QQLWS     LN +   P+ V SL +    +  +
Sbjct: 1015 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWN-STPTDVQSLIQNICSLNIR 1074

Query: 63   SQRGFLHVNLFVAIIWSLWIERNDRIFRDKK 94
            +Q+G +  N    I+W +W+ERN+RIF+ ++
Sbjct: 1075 NQKGLITFNTNATILWKIWLERNNRIFKQQE 1104

[Close]

BLAST of Spg015393 vs. NCBI nr
Match: RVW56424.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-10
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 3   ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSK 62
           +SP+IC +C  + E +DHLF+HC +   LW  L Q   +    P S+  +    F     
Sbjct: 583 LSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDMLSSNFNGFGS 642

Query: 63  SQRGF-LHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYGRIFCLWLLYGLQLL 116
           S+RG  L  N  +A++W +W ERN RI R K+  L IF G +F    L+GL +L
Sbjct: 643 SKRGIVLWQNACIALMWVVWRERNARISRTKQGILRIF-GILFVFLPLFGLFVL 695

[Close]

BLAST of Spg015393 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-12
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 3   ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSK 62
           +SPN C +C  + E ++HLFIHC  +QQLWS   Q L      P+ V SL +    +  K
Sbjct: 907 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIK 966

Query: 63  SQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD 96
           +Q+G +  N    ++W +W+ERN+RIF+ +K +
Sbjct: 967 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKE 998

[Close]

BLAST of Spg015393 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-12
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 3   ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSK 62
           +SPN C +C  + E ++HLFIHC  +QQLWS   Q L      P+ V SL +    +  K
Sbjct: 813 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKA-QALLKWNSTPNDVKSLAQNICSLNIK 872

Query: 63  SQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPD 96
           +Q+G +  N    ++W +W+ERN+RIF+ +K +
Sbjct: 873 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKE 904

[Close]

BLAST of Spg015393 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-11
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 3    ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSK 62
            +SPN C +C  + E ++HLFIHC  +QQLWS     LN +   P+ V SL +    +  +
Sbjct: 1015 LSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWN-STPTDVQSLIQNICSLNIR 1074

Query: 63   SQRGFLHVNLFVAIIWSLWIERNDRIFRDKK 94
            +Q+G +  N    I+W +W+ERN+RIF+ ++
Sbjct: 1075 NQKGLITFNTNATILWKIWLERNNRIFKQQE 1104

[Close]

BLAST of Spg015393 vs. ExPASy TrEMBL
Match: A0A803QGT5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-11
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1    MMISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVK 60
            ++ISP  CV C  N E ++HLF+HC+ + +LWS+L +   L   LP SV  +      +K
Sbjct: 1371 ILISPGWCVCCKSNGEEVEHLFLHCKFSSKLWSMLLEEFGLIWALPRSVPQMLMSK--IK 1430

Query: 61   SKSQRGFLHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYGRI 104
               ++  L     +A IW++W+ERN RIF D +    + + +I
Sbjct: 1431 GSKRQDILWKTAVLATIWAIWLERNTRIFEDVENSAIVVWDKI 1471

[Close]

BLAST of Spg015393 vs. ExPASy TrEMBL
Match: A0A438F923 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_839 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.7e-11
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 3   ISPNICVVCGLNSEALDHLFIHCQMAQQLWSLLHQGLNLSLPLPSSVVSLREETFVVKSK 62
           +SP+IC +C  + E +DHLF+HC +   LW  L Q   +    P S+  +    F     
Sbjct: 583 LSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDMLSSNFNGFGS 642

Query: 63  SQRGF-LHVNLFVAIIWSLWIERNDRIFRDKKPDLSIFYGRIFCLWLLYGLQLL 116
           S+RG  L  N  +A++W +W ERN RI R K+  L IF G +F    L+GL +L
Sbjct: 643 SKRGIVLWQNACIALMWVVWRERNARISRTKQGILRIF-GILFVFLPLFGLFVL 695

The following BLAST results are available for this feature:

BLAST of Spg015393 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	1.4e-11	38.71	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.4e-11	38.71	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
XP_030479135.1	6.9e-11	34.95	uncharacterized protein LOC115696374 [Cannabis sativa]	[more]
KAA0039950.1	6.9e-11	38.46	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
RVW56424.1	2.0e-10	37.72	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of Spg015393 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB8	6.7e-12	38.71	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	6.7e-12	38.71	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	3.3e-11	38.46	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A803QGT5	3.3e-11	34.95	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A438F923	9.7e-11	37.72	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_839 P...	[more]

BLAST of Spg015393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015393.1	Spg015393.1	mRNA