Spg015371 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015371
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	scaffold10: 15628202 .. 15634042 (+)
RNA-Seq Expression	Spg015371
Synteny	Spg015371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTTGGAGCTTGAAGTCTTTCAGTCTTGAAGGAGTCTTCAATCTCCAAGAAATGTTCAACACTTTGAAACTTATGAATTTCAGGGAGTCTTCAATCTTCAGTCTTGATGGAGTTTCTCTGACTCTGGCTGAGGGCTTCAAAATTCTGAACCCTTTGAAATTGGGTAGAACCCCTCTATTTATAGAGTTCTCCCAGATGGGCCCTAGTGACTTTTGGGCCTGACAACTTGGGCTTGGGCTTTTATTAGTCTTGGGTTCAACTATTTAGTCTTGGGTTTCTTTTATATTTGACTCAAAATCATATGACCCAAATATTTAAAATACCCAAATTTGATCAAAATAATTTATTTTTAATTAATTGATCAAATGTACATTTGACTCTAAAAATTTATAATTGACCAACTTTGTCTTCAAATTAAATTTGAGACACATGTCAATTTATATTTGGTCACAAATTTAATTATTTATAATTTCATCATTAATTTTAAATAATAACGTGATAATTTGTGATTGGTCAAAATTTCTTTTTCAACAACCCGTCTCATTTGGACGGCAGAAGATGGTTTACGAATAAAAAGAGAAAGATTTGTTATTCCAGAATTGACATCTGGTGGATTTAAAAATTAAAATAAAACCCCAAAAACAAAATGGTATTTTTAACCAAAAATTTTCTTTAAAAAAAAAAAAAATTAACCGAAAAATCTTTAGTTATTTTTCTTTTAACTAAAATTAAATAAAAGAAATAGAAAACCCCAGGTTCCCCACCCTTGGATTTTGTTCTCATACTCACCTGCTGTCTCGTCGCCGCCGTTCAGTGCCGCCGCCACCGGTTTTGTTCTAATGACAGAAAGGGGGTGTTTTCTGTAATTGACAGAACGACCTCAATAACTGCACCCTCTCCTTCTTCTACATATATCCCTCTCTACCACAATCCACTGCCCACCGCATTCTTTTACGACAGCTGATCGCGGAGGTAGAGGGAGCCACTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGACAACCTCGTAAGCAAACTCATGAAAGATGTCGAGGGCACTTGCAGGTTTGTAACTTTTCCACCCTTTTCTTTTTCTTAGCTTTTAGAGGAAAATGACCTAGATTTCATATTGGATTTTGATGTCCTAGGGTGGTATTTCATGCCTGAGATTAAATGAACAACTCAAGTATCCCAAAAACATTCACATTCCACTCCCTCAATCTAATTTTCATTGAATTCATGTTAACATATATGGCGCAAAGGGTCATGGTCTAAGGATCAAGCTTAAGTCTAGGGCTCTATGATTTTCGATTCCTTAGGAAGAGGTCCATCCGATTTTTGAAAATAAGGAATCTATTCAGATGGTTAAGAATTTCACCCGGTCTTTGATTGGACTGATCAGATGCCGTTGGTTAGAGAGAAGGAAGAGTGAGGAGGCCATAACCTTAGACTAAAAAGCCTCTTGGTTACACTAAAATCACCTGCCAAGCACCGGATTTACTCACAAATGGCATACAGATTACCCAAATTTTCCCAATTTCTAGGAGGATGAGAAATTCCTGAAAGCCATCGAGAGAGAGTTTTGAAAATGAAAAACCAAATAGATAAAGAGAGGAGCCATGGATCACTTCTACTGAGAGTCCATAGTAATACTTCCACTGTAAGAAGCTCATTGCTATTAACTTCTTCCAAGCCACCCCACACCACCTCCAACTTTTAACTAATTTAGCAGGGGAAGATGGTTGAGTAGTTTCTTGCAGCAAAACCTACCTAATAAGTCTCCTTTTGCTTACTCTCCTTGACATTCCGAGGGATATTATTTTTAAAGAAACTAAGCGCCCTTAGCTTCAATAGAAGCCTGTATTATGTCATAATTGACGGTAGATTCTAAATTAAGTTCCCTAAATCTTTTAATCTTATTGCCCTACTGCCTAATTCCCACCTTCAGCTTTCCAGTCAAAGACTTGGACCCAGAGGCTAGAATTTAGAGGAACAATACAGAGACCAACCTTAGCCATAAAAACTCAAATTTCACCATTCTCACTGGACGGACCTGAATGTGTTAGACCTCCAATATTACACACGCACAACAGAAAGGGTAAAAACGAGATTAACCAGGGAGAGAGAGAAGCAGCCAGCAGTGGGGACCGTTAGCTGCATGGGATCATGCGTGGTACGGATGTCTGGGAGGAGGAGGGTTATTTTGTAGGAGAATTGCAGCAGGGGAGGGTAGGGAATGTTTTGCGAAAACCTTGGTCTTAGGAGAGTCTCCAGTCTCTCTTTCACTGGAGGAGTTCTTATATTCTTGTTGCTTGCTTTGTTATTTGCTATCGTTTGTTTGTTTGGAACTATTTAGTGGCTTTGAACGAATCATTCCCCTTGTTCATTGAAGAACTATCAATAGAACAAGGCTGGAACGTATCTTCATTATTCTTCTATTGCTGTTTGGGATTTTTCTGCGTGTTCCTTCCATGTGTTATTTTCCAGAAGATTAGATTAGATAGCTATCAGCCTTCCAGGTGTTATTGTCCAGAAGATTAGATTACCTAACAGAATGATCTACCTCTCTTGATAAACCAGGGTAAAGTAAACTTGCCCCCTTCCGTTTGAACCACGGAAAGACATTCTCCTCTAACACCACGCCCAAAGGCTCAAAATTATTAAAATCTTCTCTTTTTATTGCCTTGATGGGATAAAGGGAGAAAAATTGACGGTGGTTTAATTTTTGTTCCCTAGCTTTTTTCTTGTGCTGCATGGTAGCACAATATTATATTTTAGAGAGTCGATCTGTACTTTTGCTGCTAAGAAGCACGGACACTTTACTCTGGCTAGCGTGTCCGTGTCCGACACGTGTCGGACACTTGGACACTCCTACACTTGTTGGATATGTATCCGACACTTGTTAGCACAATTGATATGTGACAAACACTAGTTGTAGGTTCATTTCAAACCCTTGTTAAGTATACCAAATGAACACAATGCTTAAATGAAAAAAATAATAAATTTTAAGAGTAAAATACATTAAATTCATTTTTTCAAACATACAAATGCATAAACTTATTGATTTTGAATTTCCTTGTATAAAAACGATATATATTTTAAAAAGTGTATACTTTTCTAAACGTGTCTGTGTCGTGTCCGTGTCCTAGATTTAAAAAAAATTACGTGTCACCGTGTCCGTGTTGTGTCGTATCCGTGTCTCGTGTTCGTATCCGTGCTTCTTAGTTTTGCTGCATATGCATGTTAGTTCATGAACTGATGAAAACAAATAAAAACAATTCAATTGGAGCCCCTTATGGTGTTCGTTTGACTCTTTTGACTCTTTTGGGTTTTTTTTTTTTTTTTTTCATCTATTTTCAATGAAGCCTTGGTTTCTCACAAAAAAAATAAAAATAAAAAACATTAGTTTGATAGATGATATTTCTTTTTGGAAGTTGGATACCTCTTTCAACTAGTGAACAAAGAGGGATTTCGTTATTGACAAACTTATGTACTTTAACACAGCGGCCGACATGGTTTTGTAGTGGCAATTACAGGAATCGAGAATGTTGGGAAAGGATTGATTCGTGATGGGACAGGTTTTGTCACCTTTCCTGTTAAATACCAATGTGTTGTGTTTCGGCCCTTCAAGGGAGAAATCTTAGAAGCAGTTGTTACTATGGTAAACAAGGTAGGTATATGCCACACTTTTTTGCTAACTAGAAGGTAATCGATGAAGTTTTTTTAATGATATGACCACAACTACAATTATTGTAGATGGGTTTCTTTGCTGAAGCTGGACCAGTTCAGATTTTTGTATCAAATCATGTAAGCATATATTTATGAACTACTCCAATTATCTTCGTTTTTCTTCTCTCTGATGTTTCAAACCACCAAATATCTTGGCTTGGGGCTTAGTTGTTTTTTCTTTTAAATAATTTCATGAAATCTATGGATTCGAGCCTGTGGTGGGACAGCATGGCATCGATGCTCAGAGAGGTTTTTTATGCCAATTGAACTTTTTTCACGTTGTCCACAAAGTTGTGTAATGTGTATTTAGTGAGAAGAGTAATGTGCATTATCTGAAAAAGTGGATTGTAAAAATATTAAGAGAGAAATTCGGAAATTCGTTATGAATGCTGTCACCAACTTGAGTTCTTCTAGTGAAGTATTTAAGCAAAGCTAACAGCTTTTATTAGTTTCTAGCCTTTTCTTTTGTTATTTCTCAGTGTTGTTGTGCCATGTTGAATTAATTATCATTAAGGGGGTGTTTTGCAATATAACAAAATATCTCATCTTTAAGCTTTTCATCAATGAAATTGTTATCAACACAAAACACATTATATCCCAACTCTAAAATACAAATGTTTCATTCCTAATAAACTTCGGCTCCATGATCAATGCCAACATACCAAATGCCTACTATTTGAATTCGTTCCCATCTTAACTGTATTTGCAACAACGACATCTTGGTTTTTATTTCTATTATATCTTCTTCCCCCCATAAATGTGCTTAATCTTGAATGAACTTATCTCATATCTTGTGTTTCAGTTGATACCAGATGATATGGAGTTCCAGGCTGGAGATGTGCCAAACTATACCACTTCAGATGGATCAGTATATTTCTATTTTAGATGCTTCCTCTAACATCCGCCGCTAATGCTTTCTTGTGTTAAATTTGCTAAATTACTTATGTTCTCTTGTAGGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGACGCAACTGAAATTGTATGCCTTTTCCTAATTTAGTATTGTTTGTAGCTGTCTCTATTGGTAGTTCAATAACGACCATGATTTCAAATTATTTGTTCTGTTCTCTGCATGGTGCTTATTAATATTTGTTTTCTTCTGCTCACTATGTTTCCTAGATGTATGCTTCACCTATATTCATTCTTACAATATTTGGCGTGAGTTGAACTAGTTCAACTTGTTGAGGCACATTCGCTCCTCTCAACTAAGGGGTCAGAGGTTTGAATCCTCCCCACACAATGCAAGGACTTGAGATGTTCCTTGGTTTTTAAATCATGAGGATTAAACGGAAAAACAATAAAAAGAAAACCTGAGTAGTAAGCGAAATGTTTCAAAACTTTGTTGTCTCTTAGAGCTAGTCTTGGACTAGGCGCTTATGTCGATATCTTAGTTATAGACAAAATATACTGGAATAATGAATTTAGTTGAGAATCTTGTTAGCATTTTACACGAAGTTTCAAAAGTTGTCCACTAGTACAATTAATTTATTTTGCATATTCTGTGAAGTGAAAATATTTAAAACTTGATAATTCCATGTTCACCCTTGCGACTTTGATAGAATCTGTGTCATTCTGTGCCACTATCAAATTCTGGAATGTCACATATGGGGTGACCTTTGATCTTTGGATCGAGTACATATTTCTTAATCAATTGAGCTATGTTTAAGATCAATGGAATCTAGCTGTTTTGATTTTGCTGTCCTATTTAACCATTACTTTTGTTTGCAGTTTTGTATTGGAACCATCAAAGATGATTTCTTGGGTGTGATAAATGACCCTTCGGCGACTTAAACTGCAATCTTGTTCAAGAGATTCTCCCTTGCATTGGAGTTACCAGTTTGTATGCTGTTATAATCTTGTCTTATACTTCTTCTAACCTAATTTTACTGTACAGTTTTTTGAATTTTCTAAACTGCTTTTTTATTTAATTATACCGATCCCTTTGCTAATTACTTTGGTTTGGTGGCATTGGAATGGGAAACGTGTTCATTTTAGTAGGAATTATAGTACCGGAATTATAA

mRNA sequence

ATGGGTTCTTGGAGCTTGAAGTCTTTCAGTCTTGAAGGAGTCTTCAATCTCCAAGAAATGTTCAACACTTTGAAACTTATGAATTTCAGGGAGTCTTCAATCTTCAGTCTTGATGGAAACGACCTCAATAACTGCACCCTCTCCTTCTTCTACATATATCCCTCTCTACCACAATCCACTGCCCACCGCATTCTTTTACGACAGCTGATCGCGGAGGTAGAGGGAGCCACTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGACAACCTCGTAAGCAAACTCATGAAAGATGTCGAGGGCACTTGCAGCGGCCGACATGGTTTTGTAGTGGCAATTACAGGAATCGAGAATGTTGGGAAAGGATTGATTCGTGATGGGACAGGTTTTGTCACCTTTCCTGTTAAATACCAATGTGTTGTGTTTCGGCCCTTCAAGGGAGAAATCTTAGAAGCAGTTGTTACTATGATGGGTTTCTTTGCTGAAGCTGGACCAGTTCAGATTTTTGTATCAAATCATTTGATACCAGATGATATGGAGTTCCAGGCTGGAGATGTGCCAAACTATACCACTTCAGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGACGCAACTGAAATTTTTTGTATTGGAACCATCAAAGATGATTTCTTGGGTGTGATAAATGACCCTTCGGCGACTTAA

Coding sequence (CDS)

ATGGGTTCTTGGAGCTTGAAGTCTTTCAGTCTTGAAGGAGTCTTCAATCTCCAAGAAATGTTCAACACTTTGAAACTTATGAATTTCAGGGAGTCTTCAATCTTCAGTCTTGATGGAAACGACCTCAATAACTGCACCCTCTCCTTCTTCTACATATATCCCTCTCTACCACAATCCACTGCCCACCGCATTCTTTTACGACAGCTGATCGCGGAGGTAGAGGGAGCCACTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGACAACCTCGTAAGCAAACTCATGAAAGATGTCGAGGGCACTTGCAGCGGCCGACATGGTTTTGTAGTGGCAATTACAGGAATCGAGAATGTTGGGAAAGGATTGATTCGTGATGGGACAGGTTTTGTCACCTTTCCTGTTAAATACCAATGTGTTGTGTTTCGGCCCTTCAAGGGAGAAATCTTAGAAGCAGTTGTTACTATGATGGGTTTCTTTGCTGAAGCTGGACCAGTTCAGATTTTTGTATCAAATCATTTGATACCAGATGATATGGAGTTCCAGGCTGGAGATGTGCCAAACTATACCACTTCAGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGACGCAACTGAAATTTTTTGTATTGGAACCATCAAAGATGATTTCTTGGGTGTGATAAATGACCCTTCGGCGACTTAA

Protein sequence

MGSWSLKSFSLEGVFNLQEMFNTLKLMNFRESSIFSLDGNDLNNCTLSFFYIYPSLPQSTAHRILLRQLIAEVEGATMFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQAGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAT

Homology

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BLAST of Spg015371 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-92
Identity = 171/180 (95.00%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 73  VEGATMFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVG 132
           V+GATMFFHIVLERNMQLHPRHFGRNLR+NLV+KLMKDVEGTCSGRHGFVVAITGIEN+G
Sbjct: 1   VKGATMFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIG 60

Query: 133 KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPD 192
           KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTM   MGFFAEAGPVQIFVSNHLIPD
Sbjct: 61  KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPD 120

Query: 193 DMEFQAGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA 250
           DMEFQ+GDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+A
Sbjct: 121 DMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 180

[Close]

BLAST of Spg015371 vs. NCBI nr
Match: XP_022939214.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 5.9e-92
Identity = 169/181 (93.37%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 72  EVEGATMFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENV 131
           +V+GATMFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIEN+
Sbjct: 67  KVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENI 126

Query: 132 GKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIP 191
           GKGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+VTM   MGFFAEAGPVQIFVSNHLIP
Sbjct: 127 GKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIP 186

Query: 192 DDMEFQAGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 250
           DDMEFQ+GD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 187 DDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 246

[Close]

BLAST of Spg015371 vs. NCBI nr
Match: KAG6579070.1 (hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347.8 bits (891), Expect = 7.7e-92
Identity = 169/180 (93.89%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 73  VEGATMFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVG 132
           V+GATMFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIEN+G
Sbjct: 80  VQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG 139

Query: 133 KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPD 192
           KGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+VTM   MGFFAEAGPVQIFVSNHLIPD
Sbjct: 140 KGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPD 199

Query: 193 DMEFQAGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA 250
           DMEFQ+GD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+A
Sbjct: 200 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 259

[Close]

BLAST of Spg015371 vs. NCBI nr
Match: XP_038906688.1 (DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906690.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida])

HSP 1 Score: 345.5 bits (885), Expect = 3.8e-91
Identity = 170/175 (97.14%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPDDMEFQ 197
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM   MGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 198 AGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA 250
           +GDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA 175

[Close]

BLAST of Spg015371 vs. NCBI nr
Match: EOY33918.1 (DNA-directed RNA polymerase II isoform 3 [Theobroma cacao])

HSP 1 Score: 345.1 bits (884), Expect = 5.0e-91
Identity = 166/171 (97.08%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQAGD 197
           DGTGFVTFPVKYQCVVFRPFKGE+LEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQ+GD
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEVLEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQSGD 120

Query: 198 VPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 249
           +PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 MPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPT 171

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BLAST of Spg015371 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 6.1e-92
Identity = 165/174 (94.83%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFHIVLERNMQLHPR+FGRNLRDNLVSKLMKDVEGTCSGRHGFVVA+TGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPDDMEFQ 197
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM   MGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 198 AGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 249
           +GD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

[Close]

BLAST of Spg015371 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 7.0e-88
Identity = 158/175 (90.29%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFHIVLERNMQLHPR FGRNL++NLVSKLMKDVEGTCSGRHGFVVAITGI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPDDMEFQ 197
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+   MGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 198 AGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA 250
           AGD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+A
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAA 175

[Close]

BLAST of Spg015371 vs. ExPASy Swiss-Prot
Match: Q54P04 (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum OX=44689 GN=polr2g PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-49
Identity = 93/171 (54.39%), Postives = 128/171 (74.85%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFH+ LE+++ +HP+H G NL      +L  +VEGTC+GR+GF++ IT ++ + KG + 
Sbjct: 1   MFFHLTLEKDLHMHPKHCGPNLFTIATQQLYSEVEGTCTGRYGFIITITSVDFLSKGKVL 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPDDMEFQ 197
           + +G+V F VKY+ ++F+PFKGE+L+A+VT    +GFFAEAGP+ IFVS  LIP DM F 
Sbjct: 61  ESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPLSIFVSTQLIPSDMIFD 120

Query: 198 A-GDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 245
           A   VP + + DGS KI KD EVRL+I GTRVDATEIF IG+I++D+LGVI
Sbjct: 121 AQSAVPCFVSEDGSSKISKDDEVRLQIKGTRVDATEIFAIGSIREDYLGVI 171

[Close]

BLAST of Spg015371 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-49
Identity = 90/172 (52.33%), Postives = 127/172 (73.84%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MF+HI LE  + LHPR+FG NL + +  KL  +VEGTC+G++GFV+A+T I+N+G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPDDMEFQ 197
            G GFV +PVKY+ +VFRPFKGE+++AVVT    +G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 198 A-GDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 246
              + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Spg015371 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-49
Identity = 91/172 (52.91%), Postives = 127/172 (73.84%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MF+HI LE  + LHPR+FG NL + +  KL  +VEGTC+G++GFV+A+T I+N+G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPDDMEFQ 197
            G GFV +PVKY+ +VFRPFKGE+++AVVT    +G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 198 A-GDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 246
              + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Spg015371 vs. ExPASy TrEMBL
Match: A0A6J1FGH6 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445199 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.8e-92
Identity = 169/181 (93.37%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 72  EVEGATMFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENV 131
           +V+GATMFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIEN+
Sbjct: 67  KVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENI 126

Query: 132 GKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIP 191
           GKGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+VTM   MGFFAEAGPVQIFVSNHLIP
Sbjct: 127 GKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIP 186

Query: 192 DDMEFQAGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 250
           DDMEFQ+GD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 187 DDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 246

[Close]

BLAST of Spg015371 vs. ExPASy TrEMBL
Match: A0A061GWW2 (DNA-directed RNA polymerase II isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_041752 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.4e-91
Identity = 166/171 (97.08%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQAGD 197
           DGTGFVTFPVKYQCVVFRPFKGE+LEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQ+GD
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEVLEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQSGD 120

Query: 198 VPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 249
           +PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 MPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPT 171

[Close]

BLAST of Spg015371 vs. ExPASy TrEMBL
Match: A0A0B0MFB7 (DNA-directed RNA polymerase II subunit RPB7 OS=Gossypium arboreum OX=29729 GN=F383_18350 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 5.4e-91
Identity = 166/171 (97.08%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQAGD 197
           DGTGFVTFPVKYQCVVFRPFKGEILEA VTMMGFFAEAGPVQIFVSNHLIPDDMEFQ+GD
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAAVTMMGFFAEAGPVQIFVSNHLIPDDMEFQSGD 120

Query: 198 VPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 249
           +PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 MPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPT 171

[Close]

BLAST of Spg015371 vs. ExPASy TrEMBL
Match: A0A0A0KPS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 5.4e-91
Identity = 169/175 (96.57%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPDDMEFQ 197
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM   MGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 198 AGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA 250
           +GDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA 175

[Close]

BLAST of Spg015371 vs. ExPASy TrEMBL
Match: A0A2P5X0N6 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23765 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 5.4e-91
Identity = 166/171 (97.08%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMMGFFAEAGPVQIFVSNHLIPDDMEFQAGD 197
           DGTGFVTFPVKYQCVVFRPFKGEILEA VTMMGFFAEAGPVQIFVSNHLIPDDMEFQ+GD
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAAVTMMGFFAEAGPVQIFVSNHLIPDDMEFQSGD 120

Query: 198 VPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 249
           +PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 MPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPT 171

[Close]

BLAST of Spg015371 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 325.1 bits (832), Expect = 5.0e-89
Identity = 158/175 (90.29%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MFFHIVLERNMQLHPR FGRNL++NLVSKLMKDVEGTCSGRHGFVVAITGI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTM---MGFFAEAGPVQIFVSNHLIPDDMEFQ 197
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+   MGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 198 AGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSA 250
           AGD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+A
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAA 175

[Close]

BLAST of Spg015371 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-12
Identity = 40/132 (30.30%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 120 GFVVAITGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMM---GFFAEAG 179
           G+ VA+T ++ +G+G IR+ TG V FPV +  + F+ FKGEI+  VV  +   G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 180 PVQIFVSNHLIPDDMEFQAGDVPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIG 239
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + 
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALA 166

Query: 240 TIKDDFLGVIND 247
           +++ D+LG +++
Sbjct: 167 SLEGDYLGPLSE 177

[Close]

BLAST of Spg015371 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-11
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 120 GFVVAITGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMM---GFFAEAG 179
           G+++  T +EN+G+G I++ TG + FPV +  + F+ FKGEI+  VV  +   G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 180 PVQIFVSNHLIPDDMEFQAGDVPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 239
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 240 TIKDDFLG 243
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]

BLAST of Spg015371 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.4e-05
Identity = 28/87 (32.18%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MF+   LE ++++ P      L D + S L            G  V+I  I++V  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEA 165
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]

BLAST of Spg015371 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.4e-05
Identity = 28/87 (32.18%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 78  MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 137
           MF+   LE ++++ P      L D + S L            G  V+I  I++V  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 138 DGTGFVTFPVKYQCVVFRPFKGEILEA 165
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:

BLAST of Spg015371 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032688.1	1.5e-92	95.00	hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022939214.1	5.9e-92	93.37	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucurbita moschata]	[more]
KAG6579070.1	7.7e-92	93.89	hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038906688.1	3.8e-91	97.14	DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 ...	[more]
EOY33918.1	5.0e-91	97.08	DNA-directed RNA polymerase II isoform 3 [Theobroma cacao]	[more]

BLAST of Spg015371 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	6.1e-92	94.83	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	7.0e-88	90.29	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q54P04	1.7e-49	54.39	DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum OX=44689...	[more]
Q5E9B8	2.2e-49	52.33	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	2.2e-49	52.91	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]

BLAST of Spg015371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGH6	2.8e-92	93.37	DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A061GWW2	2.4e-91	97.08	DNA-directed RNA polymerase II isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_04175...	[more]
A0A0B0MFB7	5.4e-91	97.08	DNA-directed RNA polymerase II subunit RPB7 OS=Gossypium arboreum OX=29729 GN=F3...	[more]
A0A0A0KPS4	5.4e-91	96.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1	[more]
A0A2P5X0N6	5.4e-91	97.08	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23765 PE=3 SV...	[more]

BLAST of Spg015371 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	5.0e-89	90.29	DNA-directed RNA polymerase II	[more]
AT4G14660.1	3.8e-12	30.30	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT3G22900.1	1.9e-11	32.03	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G06790.2	4.4e-05	32.18	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.1	4.4e-05	32.18	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 85..141 e-value: 2.5E-12 score: 46.9
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 77..157 e-value: 1.9E-27 score: 97.4
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 78..155
None	No IPR available	GENE3D	2.40.50.140		coord: 158..245 e-value: 1.7E-31 score: 110.1
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 66..249
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 79..158 e-value: 1.99613E-39 score: 129.609
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 158..242 e-value: 7.93279E-42 score: 136.237
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 155..230 e-value: 2.7E-11 score: 43.6
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 66..249
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 156..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015371.1	Spg015371.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding