Spg015366 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg015366
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Integrase core domain containing protein
Location	scaffold10: 11703992 .. 11707452 (+)
RNA-Seq Expression	Spg015366
Synteny	Spg015366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCCAATTCATTGCAAACAGGGGTAAGAGCATCCATCTATGGAGCAGCTACAAGTGAAGCAGCAGAGACAGTCCCAACGACAGAAGTGAATCCACTATATGAATCGTGGATTGTAGTTGATCAACTGCTATTAGAGTGGTTGTATAACTCAATGACGCCTAAAGTAGCCACTCAAGTTATGGGGTTTGAAAGTGTTCAAGATCTATGGTTAGCGATCCAAGAATTGTTCGGTGTGCAATCCCGTGCTGAGGAAGATTACCTCTGCCAGGTATTTCAACAATCTAGAAAAGGGAACTTGAAAATGTCTGATTATTTCCGAATTATGAAGAGTCATGCAAACAACTTAGTGCAAGCAAACAGTCCAATCAACACTCGTTTGTTGATTTCACAAATTCTTTTGGGCCTTGACAAAGAGTACAACCCAATTGTTGCCATGATCCAAGGAAGAGTAGGAATAACCTGGTCTAAGATGCAAGCTGAATTGCTGGTATTTGAAAAGCATATGGAGTTACAGAACTGATAGCTCACAAAATGAGCTATTTTTTTGGTCTTTTATAGTTAGTATTTGAGAATTATTTGGTCAAAATCATACACTTTCATGTTTATTTTGTAGGAAATGCATTCTTGGATGAATTGTTGAATTAGAAAGTTGATCGAGTGTTCGGGACACAAAAAGTGGCAAAGGAAGTGAAGAAGAATCAAAGTTAGAGCTGCAGCAGCCAAGAAAGCTGAGAGCACAGCATCTCGACGCTACTCCTTAGTGTCTCGATGCTGGTGCAACAACCTTCCCCAACTGAAGACCTGAGGGTACAACGTCTCGATGGTGGCCAACTTTCCTTTATTAAAGACTTGATTTTCTTGTTTTTCCACCACCCTAAACATTTTGCACAATATTTTTGAATTTTTTTATTTTGAAAATAGAAAAGAAAAGAAAACATGAAAATATAAACAAAAGAAAGAAAACAACAGAAAATAATATACATATTTACACAATCTCATACTCGAATTACTTGGGATCGATCAAGGTAATGGGGGCCTTATCCTTGCTTAGGCCTTCTCTTTTCGGGTTCTCTATATTGCTTGCTAGGGTCCCTATTGGTTTGTTCCTCATTTACTTAGCTAACTATCCAATTTGAGATTCAAGACTCCTCAAGGAAGTCGTTTGACTTTGAATTACTGCGTCATTCTTTGTCATTAGTTCCCTCATAAGAATATCCAAGTTTGTTGTTGATTAAGGTTGCACTTGCATTGGCTGCTGCAAAGGTTGTGCAATATTTAGTTGAGCTTGACCATTGAATCCTGGTGGTCCTCCCTGCTTAACAAAAGGGGTTGCGTTGGACGTGCTAGCATTTTGTCCTCCCCATGATAAGTTCGGGTGTTGTCTCCATCCTGGAATATTAAATGTATTAGAGTAAGGATTTATTCAGTTTTGTGCACCTACAAAATATACTAAAGCTGGATTTTGAGGACAATCTTCAAATGAGTGCTCTTCTTTGCAAGTAGTGCACATAGGGGTTGAAACTTGGCTCACGGCTGCAACTTGAACTTGATTCCCTAAAGTAAGATTCATAAGCAAATCGTTAATAGTTAGCATCCGCTCCGATAGTGTCTCGAGATGATTGACTTCTTGGATCTTGACACTGCTTCTAGATGGTGTTTCTTCTTCTCTCCGTTGACTGTTATTTGCAACAATTGCATCCAGAATCTCATTTGCCTCATTGAAAGTCTTTTTAAGCAACAAACCATTAGCTGATGCATTAACTATTGCTTTGGAAGCTTGAGTCAATTCATTGATAATTTCCCCTCAGATTTGTGCATTCTTTGTAGGCAGAAAAAAATTCAAAAGAAATTTTTCAACAAGCTCATCCCATGTGGTGATGCTATCCGGTGGAAAAGAATCTAACCATGCTTCTGCATTACCCTGCAAAGAAAATGGAAAAAGTTTCAAATGCAAAGTTTCATTGGATACTCCATTAAGCTTGAACTAGTTGCATATTCTCAAGATTTGCTTCATGTGCTTGAGAGGATCTTCACTAGGAAGTCCAAAAAATTGGCCTATGGTTTGAAGCATTTGGAACATGATTGGCTTGAGCTCGAAATGATTGGCATCAACGACTGGCTCAACATTTCCTGTATTGAGATTGTAGAAAGTTGCGGCCGCATAATCCCTGATGGCTCTATCCCTTTCATGTGTAATAAGAATAGGATTATGTGCTGTCGCTGCTTGTTGCTGCACATTGTTAGGTTGTGCTCCTCTTTGCTTCACACCGAGAAGGTCTCCAACAGGTGGCTCTATAGTAATTTCCTGCAGAAAACCTTCTTTTGGGGTTTCCTGTTATTGAACTTCTCGTAGTTCCCTTAACCTTCTTCTTTGCTCCTTACGACGCTGTACGAAAGTCTTCTCTATCTCAGGGTCAAAATTGAATTCAGGTCTTTTGTGCATGCACCAATCCAATCTATAAAGAAATCCCTGCAAAAAGAATTTATGTCCTGTGATAGAGGAATTTGCGGTCGCAAACCGATCGCAATTCCTGCGACCGCAAATTCCTGCTCTACAGAAACTAAAATTTGTGTAATTAAACCGTTTTACCAAAATCTCCCTAACAACGTCGCCAAAAACTTGATGACGTGTTGTTGCGACGAAGCGTGTGCTGCAAGCGCAACACCCTGCTCAAGTGCAAGTATACACTATCAAGTAATAAAGATGAAAGTATTCCGGATATCAAACCCAAGGGAGATGGTGACTAGTTTAAAAACACAAGATTCTGCAAAATAAGAACCTCCTCTAAGTTTGCAACCGAGGATGGTAACCAAAGGAATATTTCAAATGGGGTCTTGATTGAGAACAAAAATGGAATTAAGCAAGTAAATAAAAACGACAAAAATACTTATGAGATAAGCGGGGAAATTCAAATAGTATCAACCAAGAGCTTTGGATTGCACCCACCTTTGCGCTCGCAACTTACTCAAACACTGCAAATGGCTGGAGAACACTATCTATGTTGCCTACATAGACATGGTGCAGTGATAAGGGTAAAAAATATACCTATTTTACCCTTATATTTAGCTCATTATCTTGTCAAAACTATATTTTTGATCAATTTTACTATTCCCGAGCTCAAAATATGTTAAAGTTGTTAAGTTAGGGTGTTGAGAGTCACTTTTGTCAAATTATGCTCATTTTTGCTTAAAAAGACTCAATTTTAAGGGAATTTGACTAAGTTTGTTGCTGTGCAGGAAAACGGAGGAAATGTTGGAATTTACCCAGAAATGCGACCACATTTCTGGGAAGGCAAAATGAAATACGACCGAATTTCTGGAAAAACTAAGGCAGTTCCGGATCGTCCGCGGGTCGTTTTGAACGAGACTTCTTCGCACCTAATCGGCTGTTTTAACCTCGAAACCGACTGGGCTACCTACCAGCACCTATTTCGCAGCTCCTCAACCATTTCCTAA

mRNA sequence

ATGAATCCCAATTCATTGCAAACAGGGGTAAGAGCATCCATCTATGGAGCAGCTACAAGTGAAGCAGCAGAGACAGTCCCAACGACAGAAGTGAATCCACTATATGAATCGTGGATTGTAGTTGATCAACTGCTATTAGAGTGGTTGTATAACTCAATGACGCCTAAAGTAGCCACTCAAGTTATGGGGTTTGAAAGTGTTCAAGATCTATGGTTAGCGATCCAAGAATTGTTCGGTGTGCAATCCCGTGCTGAGGAAGATTACCTCTGCCAGGTATTTCAACAATCTAGAAAAGGGAACTTGAAAATGTCTGATTATTTCCGAATTATGAAGAGTCATGCAAACAACTTAGTGCAAGCAAACAGTCCAATCAACACTCGTTTGTTGATTTCACAAATTCTTTTGGGCCTTGACAAAGAGTACAACCCAATTGTTGCCATGATCCAAGGAAGAGTAGGAATAACCTGGTCTAAGATGCAAGCTGAATTGCTGGAAAACGGAGGAAATGTTGGAATTTACCCAGAAATGCGACCACATTTCTGGGAAGGCAAAATGAAATACGACCGAATTTCTGGAAAAACTAAGGCAGTTCCGGATCGTCCGCGGGTCGTTTTGAACGAGACTTCTTCGCACCTAATCGGCTGTTTTAACCTCGAAACCGACTGGGCTACCTACCAGCACCTATTTCGCAGCTCCTCAACCATTTCCTAA

Coding sequence (CDS)

ATGAATCCCAATTCATTGCAAACAGGGGTAAGAGCATCCATCTATGGAGCAGCTACAAGTGAAGCAGCAGAGACAGTCCCAACGACAGAAGTGAATCCACTATATGAATCGTGGATTGTAGTTGATCAACTGCTATTAGAGTGGTTGTATAACTCAATGACGCCTAAAGTAGCCACTCAAGTTATGGGGTTTGAAAGTGTTCAAGATCTATGGTTAGCGATCCAAGAATTGTTCGGTGTGCAATCCCGTGCTGAGGAAGATTACCTCTGCCAGGTATTTCAACAATCTAGAAAAGGGAACTTGAAAATGTCTGATTATTTCCGAATTATGAAGAGTCATGCAAACAACTTAGTGCAAGCAAACAGTCCAATCAACACTCGTTTGTTGATTTCACAAATTCTTTTGGGCCTTGACAAAGAGTACAACCCAATTGTTGCCATGATCCAAGGAAGAGTAGGAATAACCTGGTCTAAGATGCAAGCTGAATTGCTGGAAAACGGAGGAAATGTTGGAATTTACCCAGAAATGCGACCACATTTCTGGGAAGGCAAAATGAAATACGACCGAATTTCTGGAAAAACTAAGGCAGTTCCGGATCGTCCGCGGGTCGTTTTGAACGAGACTTCTTCGCACCTAATCGGCTGTTTTAACCTCGAAACCGACTGGGCTACCTACCAGCACCTATTTCGCAGCTCCTCAACCATTTCCTAA

Protein sequence

MNPNSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELLENGGNVGIYPEMRPHFWEGKMKYDRISGKTKAVPDRPRVVLNETSSHLIGCFNLETDWATYQHLFRSSSTIS

Homology

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BLAST of Spg015366 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-51
Identity = 110/180 (61.11%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 2   NPNSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQV 61
           N  + QT + A    +  +EAA       +NPLYESW+  DQLLL WLYNSMTP+VATQV
Sbjct: 9   NMETSQTNISAPSSSSIATEAA-------INPLYESWVTTDQLLLGWLYNSMTPEVATQV 68

Query: 62  MGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQAN 121
           MG+E+  DLW AIQELFGVQS+AEEDYL QVFQQ+RKG+LKM+D+ R+MKSHA+NL QA 
Sbjct: 69  MGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAG 128

Query: 122 SPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELLE-NGGNVGIYPEMRPHF 181
           SP+ TR LISQ+LLGLD+EYNP+VA IQG+ GI+W +MQAE    +GGN       +P F
Sbjct: 129 SPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAEFRSVSGGNQRQNQNSQPPF 181

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BLAST of Spg015366 vs. NCBI nr
Match: XP_038904321.1 (uncharacterized protein LOC120090675 [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 5.1e-45
Identity = 98/165 (59.39%), Postives = 121/165 (73.33%), Query Frame = 0


Query: 1   MNPNSLQTGVR-ASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVAT 60
           M+  S   GV   S  G++ S A+ +  T EVNP Y +W+ VDQLLL WLYNSMTPK+A 
Sbjct: 11  MSTRSTGVGVAPLSAEGSSGSGASSSSTTLEVNPQYRAWMAVDQLLLGWLYNSMTPKIAI 70

Query: 61  QVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQ 120
           QVMGFE  +DLW+ IQ+LFG+QSRAEEDYL  VFQ +RKGNLKM DY R MK + +NL Q
Sbjct: 71  QVMGFECARDLWINIQQLFGIQSRAEEDYLRHVFQTTRKGNLKMEDYLRTMKMNVDNLEQ 130

Query: 121 ANSPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL 165
           A SP+  R L+ Q+LLGLD+EYN IVA IQGR  ++W  MQ++LL
Sbjct: 131 AGSPVPPRALVLQVLLGLDEEYNAIVATIQGRADMSWLDMQSKLL 175

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BLAST of Spg015366 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 5.1e-45
Identity = 96/152 (63.16%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 13  SIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWL 72
           SI G++ S A+ ++   EVNP YESW+ VDQLLL WLYNSMTP+VA QVMG E  +DLW 
Sbjct: 24  SIKGSSGSGASSSLTALEVNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWT 83

Query: 73  AIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPINTRLLISQ 132
           +I +LFGVQSR EEDYL  VFQ +RKGNLKM +Y + MK + +NL QA SP+  R L+SQ
Sbjct: 84  SIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPRTLVSQ 143

Query: 133 ILLGLDKEYNPIVAMIQGRVGITWSKMQAELL 165
           +LLGLD+EYN IVAMIQGRV ++W  MQ+ELL
Sbjct: 144 VLLGLDEEYNAIVAMIQGRVDMSWLDMQSELL 175

[Close]

BLAST of Spg015366 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 5.1e-45
Identity = 96/152 (63.16%), Postives = 118/152 (77.63%), Query Frame = 0


Query: 13  SIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWL 72
           SI G++ S A+ ++   EVNP YESW+ VDQLLL WLYNSMTP+VA QVMG E  +DLW 
Sbjct: 24  SIKGSSGSGASSSLTALEVNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWT 83

Query: 73  AIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPINTRLLISQ 132
           +I +LFGVQSR EEDYL  VFQ +RKGNLKM +Y + MK + +NL QA SP+  R L+SQ
Sbjct: 84  SIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPRTLVSQ 143

Query: 133 ILLGLDKEYNPIVAMIQGRVGITWSKMQAELL 165
           +LLGLD+EYN IVAMIQGRV ++W  MQ+ELL
Sbjct: 144 VLLGLDEEYNAIVAMIQGRVDMSWLDMQSELL 175

[Close]

BLAST of Spg015366 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 182.2 bits (461), Expect = 5.3e-42
Identity = 90/157 (57.32%), Postives = 120/157 (76.43%), Query Frame = 0


Query: 8   TGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESV 67
           T    +I G+ +S+++ T     +NP YE+WIVVD+LLL WLYNSM   VA QVMGF + 
Sbjct: 78  TDTPTNIEGSTSSQSSPT-----LNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTS 137

Query: 68  QDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPINTR 127
           ++LW A+QELFGVQSRAE DYL QVFQQ+ KG+L+M +Y ++MKSHA+NL  A S ++ R
Sbjct: 138 RELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVR 197

Query: 128 LLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL 165
            L+SQ+L GLD+EYNPIV  +QG+V ++WS+M AELL
Sbjct: 198 DLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELL 229

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BLAST of Spg015366 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 110/180 (61.11%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 2   NPNSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQV 61
           N  + QT + A    +  +EAA       +NPLYESW+  DQLLL WLYNSMTP+VATQV
Sbjct: 9   NMETSQTNISAPSSSSIATEAA-------INPLYESWVTTDQLLLGWLYNSMTPEVATQV 68

Query: 62  MGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQAN 121
           MG+E+  DLW AIQELFGVQS+AEEDYL QVFQQ+RKG+LKM+D+ R+MKSHA+NL QA 
Sbjct: 69  MGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAG 128

Query: 122 SPINTRLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELLE-NGGNVGIYPEMRPHF 181
           SP+ TR LISQ+LLGLD+EYNP+VA IQG+ GI+W +MQAE    +GGN       +P F
Sbjct: 129 SPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAEFRSVSGGNQRQNQNSQPPF 181

[Close]

BLAST of Spg015366 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 90/157 (57.32%), Postives = 120/157 (76.43%), Query Frame = 0


Query: 8   TGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESV 67
           T    +I G+ +S+++ T     +NP YE+WIVVD+LLL WLYNSM   VA QVMGF + 
Sbjct: 78  TDTPTNIEGSTSSQSSPT-----LNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTS 137

Query: 68  QDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPINTR 127
           ++LW A+QELFGVQSRAE DYL QVFQQ+ KG+L+M +Y ++MKSHA+NL  A S ++ R
Sbjct: 138 RELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVR 197

Query: 128 LLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL 165
            L+SQ+L GLD+EYNPIV  +QG+V ++WS+M AELL
Sbjct: 198 DLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELL 229

[Close]

BLAST of Spg015366 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.2e-37
Identity = 80/147 (54.42%), Postives = 107/147 (72.79%), Query Frame = 0


Query: 18  ATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFESVQDLWLAIQEL 77
           AT  A+ ++    VN L+E W+  D LLL WLYNSMTP VA Q+MGF +V+DLW A Q+ 
Sbjct: 88  ATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDF 147

Query: 78  FGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPINTRLLISQILLGL 137
           FGVQSRAEED+L Q+ Q +RKGN KM +Y  +MK++ +NL Q  SP+  R LISQ+LLGL
Sbjct: 148 FGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPVPRRALISQVLLGL 207

Query: 138 DKEYNPIVAMIQGRVGITWSKMQAELL 165
           D+ YN ++ +IQG+  I+W  MQ++LL
Sbjct: 208 DEVYNLVIVVIQGKPDISWLDMQSKLL 234

[Close]

BLAST of Spg015366 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.4e-37
Identity = 84/158 (53.16%), Postives = 111/158 (70.25%), Query Frame = 0


Query: 9   GVRAS--IYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFES 68
           GV AS  +     + ++ ++ +  VNP YE W+  D LLL  +YNSM P VA Q+MGF +
Sbjct: 41  GVEASSVVSEGTVASSSTSMNSKIVNPKYEQWVTSDMLLLGLIYNSMVPDVALQLMGFNT 100

Query: 69  VQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPINT 128
            +DLW AIQ LFG++SRAEE +L   FQ +R+GN KM DY RIMK +A+NL QA SP+  
Sbjct: 101 AKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLRIMKINADNLGQAGSPVPH 160

Query: 129 RLLISQILLGLDKEYNPIVAMIQGRVGITWSKMQAELL 165
           R LISQ+LLGLD+ YNP+ A+IQG+  I+W  MQ+ELL
Sbjct: 161 RYLISQVLLGLDEVYNPVTAVIQGKPDISWLDMQSELL 198

[Close]

BLAST of Spg015366 vs. ExPASy TrEMBL
Match: A0A5A7UY76 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00940 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.5e-31
Identity = 75/140 (53.57%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 4   NSLQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMG 63
           N +       I  A    ++ +  T  VNP ++ W+  D LLL W+YNSMT +VA Q+MG
Sbjct: 27  NQIDESQSDGIAKATDGASSRSTETKTVNPKFDQWVTSDLLLLGWIYNSMTAEVAFQLMG 86

Query: 64  FESVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSP 123
           F + +DL  AIQ+LFGVQSR EED+L   FQ +RKGN KM DY RIMK++A NL QA SP
Sbjct: 87  FNTAKDLEEAIQDLFGVQSRGEEDFLRHTFQTTRKGNSKMEDYLRIMKTNAENLGQAGSP 146

Query: 124 INTRLLISQILLGLDKEYNP 144
           I  R LISQ+LLGLD+ YNP
Sbjct: 147 IPLRSLISQVLLGLDEVYNP 166

[Close]

BLAST of Spg015366 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 1.7e-06
Identity = 38/145 (26.21%), Postives = 73/145 (50.34%), Query Frame = 0


Query: 6   LQTGVRASIYGAATSEAAETVPTTEVNPLYESWIVVDQLLLEWLYNSMTPKVATQVMGFE 65
           L  GV   I G++T       P TE     + W   D L+  W+Y ++T  +   ++   
Sbjct: 45  LSFGVLGHIDGSST-----PTPMTE-----KRWKERDGLVKMWIYGTITDSLLDTIIKVG 104

Query: 66  -SVQDLWLAIQELFGVQSRAEEDYLCQVFQQSRKGNLKMSDYFRIMKSHANNLVQANSPI 125
            + +DLWL+++ LF     A         + +   +L + +Y + +KS ++ L   +SPI
Sbjct: 105 CTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPI 164

Query: 126 NTRLLISQILLGLDKEYNPIVAMIQ 150
           + R+L+  +L GL ++Y+ I+ +I+
Sbjct: 165 SDRVLVMHLLNGLTEKYDYILNVIK 179

[Close]

BLAST of Spg015366 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 5.0e-06
Identity = 31/116 (26.72%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 37  SWIVVDQLLLEWLYNSMTPK-VATQVMGFESVQDLWLAIQELFGVQSRAEEDYLCQVFQQ 96
           +W   D ++   LY ++TPK      +   + +D+WL I+  F     A    L    + 
Sbjct: 64  NWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRT 123

Query: 97  SRKGNLKMSDYFRIMKSHANNLVQANSPINTRLLISQILLGLDKEYNPIVAMIQGR 152
              G+++++DY+R MK  A++L   + P+  R L+  +L GL+ +++ I+ +I+ R
Sbjct: 124 KDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHR 179

The following BLAST results are available for this feature:

BLAST of Spg015366 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148963.1	2.1e-51	61.11	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
XP_038904321.1	5.1e-45	59.39	uncharacterized protein LOC120090675 [Benincasa hispida]	[more]
XP_038905164.1	5.1e-45	63.16	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]
XP_038905161.1	5.1e-45	63.16	uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]	[more]
XP_022151683.1	5.3e-42	57.32	uncharacterized protein LOC111019598 [Momordica charantia]	[more]

BLAST of Spg015366 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5J0	1.0e-51	61.11	uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DCW4	2.5e-42	57.32	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7SIT7	4.2e-37	54.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E3L7	9.4e-37	53.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UY76	4.5e-31	53.57	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Spg015366 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	1.7e-06	26.21	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G34070.1	5.0e-06	26.72	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 38..165 e-value: 5.9E-10 score: 39.0
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 29..149
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 29..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg015366.1	Spg015366.1	mRNA