Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATGAGGAAAAGACGTCTAACAGCTAAGTCGAGAAATAGTAATGATGATGATGATGATAGTACAGACGATGGAAACACATCTGGTGGAGGAGGGACAAATGTGGGGACTTCGAGCGGTTACCACACAGGAGAAGGACAGTCTAGTCAACCTGGAGTAAGTCCATTTTCATGTGAGGTTGGATTTGATCATGTCACTCAAGACGAAGACCATGGATCTAGAGAGGGTGGCGAGGGGATTGCTGCTATTGGCAAACCATTCTATAGACAACGAGATGCAAATTATTTTTATTCGACGCAGTCAGATGAAAATTCTTTGATTTCAAGTATGGAAACAATGATCATAAGCAGCAACAACACACAACAAGGATATGGTCAAGGAATGTATTCTTACTCCAATTACGAAGACTCTTCAAGCCTTGGCTATAGCAACATCGAGCCTAGATTCTCACAACCCACTCATGAAATGTATCCACCAATAGGATCTATATGTTGGCCATACGAGTCATATCGCTATCATTTAGACAATTTTCTTCAGAATTATCAGTATAGGATGACTTGGGAGCAATATTGTAACTTCTACCAGAATTACCAAAATTCTGGATTAGATGCTCCACGATCATCTTTTTGGTATTAG
mRNA sequence
ATGAGGATGAGGAAAAGACGTCTAACAGCTAAGTCGAGAAATAGTAATGATGATGATGATGATAGTACAGACGATGGAAACACATCTGGTGGAGGAGGGACAAATGTGGGGACTTCGAGCGGTTACCACACAGGAGAAGGACAGTCTAGTCAACCTGGAGTAAGTCCATTTTCATGTGAGGTTGGATTTGATCATGTCACTCAAGACGAAGACCATGGATCTAGAGAGGGTGGCGAGGGGATTGCTGCTATTGGCAAACCATTCTATAGACAACGAGATGCAAATTATTTTTATTCGACGCAGTCAGATGAAAATTCTTTGATTTCAAGTATGGAAACAATGATCATAAGCAGCAACAACACACAACAAGGATATGGTCAAGGAATGTATTCTTACTCCAATTACGAAGACTCTTCAAGCCTTGGCTATAGCAACATCGAGCCTAGATTCTCACAACCCACTCATGAAATGTATCCACCAATAGGATCTATATGTTGGCCATACGAGTCATATCGCTATCATTTAGACAATTTTCTTCAGAATTATCAGTATAGGATGACTTGGGAGCAATATTGTAACTTCTACCAGAATTACCAAAATTCTGGATTAGATGCTCCACGATCATCTTTTTGGTATTAG
Coding sequence (CDS)
ATGAGGATGAGGAAAAGACGTCTAACAGCTAAGTCGAGAAATAGTAATGATGATGATGATGATAGTACAGACGATGGAAACACATCTGGTGGAGGAGGGACAAATGTGGGGACTTCGAGCGGTTACCACACAGGAGAAGGACAGTCTAGTCAACCTGGAGTAAGTCCATTTTCATGTGAGGTTGGATTTGATCATGTCACTCAAGACGAAGACCATGGATCTAGAGAGGGTGGCGAGGGGATTGCTGCTATTGGCAAACCATTCTATAGACAACGAGATGCAAATTATTTTTATTCGACGCAGTCAGATGAAAATTCTTTGATTTCAAGTATGGAAACAATGATCATAAGCAGCAACAACACACAACAAGGATATGGTCAAGGAATGTATTCTTACTCCAATTACGAAGACTCTTCAAGCCTTGGCTATAGCAACATCGAGCCTAGATTCTCACAACCCACTCATGAAATGTATCCACCAATAGGATCTATATGTTGGCCATACGAGTCATATCGCTATCATTTAGACAATTTTCTTCAGAATTATCAGTATAGGATGACTTGGGAGCAATATTGTAACTTCTACCAGAATTACCAAAATTCTGGATTAGATGCTCCACGATCATCTTTTTGGTATTAG
Protein sequence
MRMRKRRLTAKSRNSNDDDDDSTDDGNTSGGGGTNVGTSSGYHTGEGQSSQPGVSPFSCEVGFDHVTQDEDHGSREGGEGIAAIGKPFYRQRDANYFYSTQSDENSLISSMETMIISSNNTQQGYGQGMYSYSNYEDSSSLGYSNIEPRFSQPTHEMYPPIGSICWPYESYRYHLDNFLQNYQYRMTWEQYCNFYQNYQNSGLDAPRSSFWY
Homology
BLAST of Spg015089 vs. NCBI nr
Match:
PRQ60663.1 (hypothetical protein RchiOBHm_Chr1g0383751 [Rosa chinensis])
HSP 1 Score: 78.2 bits (191), Expect = 9.6e-11
Identity = 73/225 (32.44%), Postives = 98/225 (43.56%), Query Frame = 0
Query: 2 RMRKRRLTAKSRNSNDDDD--------DSTDDGNTSGGGGTNVGTSSGYHTGEGQSSQPG 61
R+ + +++D DD DS+DDG GG GT G G GQSS
Sbjct: 71 RVLSEEVVKNPEDNSDSDDAWGGTATPDSSDDGG-DGGSGTGGG---GERYEYGQSSVDE 130
Query: 62 VSPFSCEVGFDHVTQDEDHGSREGGEGIAAIGKPFYRQRDANYFYSTQSDENSLISSMET 121
F+CE FDHVTQDEDHG R G G + + R A ST SD +S+ S ++
Sbjct: 131 GFQFTCECNFDHVTQDEDHGVRTAGHGAEEKTRYGRKTRGAIDDQSTPSDVSSIALSFDS 190
Query: 122 MIIS------SNNTQQGYGQGMYSYSNYEDSSSLGYSNIEPRFSQPTHEMYPPIGSI-CW 181
+ + SN + +G Q Y Y Y + + S H YP IG
Sbjct: 191 ISLGTERSGISNESHEGNNQFGYDAYGYNQ-----YGEVYDQSSSWVHPSYPLIGKTDSS 250
Query: 182 PYESYRYHLDNFLQNYQYRMTWEQYCNFYQNYQNSGLDAPRSSFW 212
E Y YH+ ++ +Y M+W YC F Q + PR SFW
Sbjct: 251 SKEIYNYHVHHYNSHYMGHMSWSDYCIFVD--QRAAFQPPRVSFW 284
BLAST of Spg015089 vs. NCBI nr
Match:
PRQ21456.1 (hypothetical protein RchiOBHm_Chr7g0239421 [Rosa chinensis])
HSP 1 Score: 75.9 bits (185), Expect = 4.8e-10
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = 0
Query: 28 TSGGGGTNVGTSSGYHTGEGQSSQPGVSPFSCEVGFDHVTQDEDHGSREGGEGIAAIGKP 87
T+ G GT G G GQSS G F+CE FDH TQDEDHG R G G +
Sbjct: 52 TTAGSGTGGG---GERYEYGQSSVDGGFQFTCEGNFDHATQDEDHGVRTAGHGAQEKTRY 111
Query: 88 FYRQRDANYFYSTQSDENSLISSMETMIISSNNTQQGYGQGMYSYSNYEDSSSLGYSNIE 147
R R A ST SD +S+ S ++ IS + G + +N + GY+
Sbjct: 112 GSRTRGATNDQSTPSDVSSIALSFDS--ISLGTERSGISNESHESNNQFGYDAYGYNQYG 171
Query: 148 PRFSQPT---HEMYPPIG-SICWPYESYRYHLDNFLQNYQYRMTWEQYCNFYQNYQNSGL 207
+ Q + H YP IG ++ E Y YH+ ++ +Y M+W YC F Q +
Sbjct: 172 EVYDQSSSWVHPYYPLIGETVGSSKEIYNYHVHHYNSHYMGHMSWSDYCIFVD--QRAAF 231
Query: 208 DAPRSSF 211
PR SF
Sbjct: 232 QPPRVSF 231
BLAST of Spg015089 vs. NCBI nr
Match:
RVW90227.1 (hypothetical protein CK203_036784 [Vitis vinifera])
HSP 1 Score: 75.1 bits (183), Expect = 8.1e-10
Identity = 73/215 (33.95%), Postives = 100/215 (46.51%), Query Frame = 0
Query: 26 GNTSGGGGTNVGTS-SGYHTGEGQSSQPGVSPFSCEVGFDHVTQDEDHGSREGGEGIAAI 85
G GGT+ G+ +G GE Q SQ +S F+CE F H TQDEDHGSR G GI AI
Sbjct: 607 GYDGSRGGTDDGSDHTGGDIGERQQSQYPMSQFTCENDFTHCTQDEDHGSRRAGPGIGAI 666
Query: 86 GKPFYRQRDANYFYSTQSDENSLISSMETMII------SSNNTQ------QGYGQGM--- 145
GKP+ ++ T +E L S E+M I SSN GYGQ
Sbjct: 667 GKPYKGRKRT----MTSYNEELLSGSFESMSIGTQFSDSSNEANVYPPYVMGYGQPSSST 726
Query: 146 ---YSYSNYEDSSSLGYS---NIEPRFSQPT--HEMYP-PIGSICWPYESYRYHLDNFLQ 205
Y Y ++ + Y ++ F T + YP + ++ E Y +H+ F Q
Sbjct: 727 DEEYGMPTYPSAAQMSYQVPYQMQGGFDMNTWVNLEYPIHVEAVGRTQEIYAWHVRIFNQ 786
Query: 206 NYQYRMTWEQYCNFYQN---YQNSGLDAPRSSFWY 213
Y+ M+W QYC Q+ + ++ RSSFWY
Sbjct: 787 YYRGSMSWYQYCLQQQDEVPSSTNSIEPHRSSFWY 817
BLAST of Spg015089 vs. NCBI nr
Match:
RVX08915.1 (hypothetical protein CK203_011029 [Vitis vinifera])
HSP 1 Score: 75.1 bits (183), Expect = 8.1e-10
Identity = 81/233 (34.76%), Postives = 98/233 (42.06%), Query Frame = 0
Query: 12 SRNSNDDDDDSTDDGNTSGGGGTNVGTSSGYHTGEGQSSQPGVSPFSCEVGFDHVTQDED 71
S + D TDDG + GG N E Q SQ VS F+CE F H TQDED
Sbjct: 804 SASGYDGSRGGTDDGGDNAGGDIN----------ERQHSQYPVSQFTCENTFTHCTQDED 863
Query: 72 HGSREGGEGIAAIGKPFYRQRDANYFYSTQSDENSLISSMETMII------SSNNTQ--- 131
HGSR G GI AIGKP YR R+ +E L S E+M I SSN T
Sbjct: 864 HGSRRAGPGIRAIGKP-YRGRER---MMEPYNEELLSGSFESMSIGTQFSDSSNETNVYP 923
Query: 132 ---QGYGQGM------YSYSNYEDSSSLGYS-----------NIEPRFSQPTHEMYPPIG 191
YGQ Y S Y S + Y N F P H +
Sbjct: 924 PHVMSYGQPSSSTDEEYGMSRYSPSRQMSYQVPYQMEGGLGINTWVNFEYPIH-----VE 983
Query: 192 SICWPYESYRYHLDNFLQNYQYRMTWEQYCNFYQNYQNSG---LDAPRSSFWY 213
++ E Y +H+ F Q YQ ++W QYC Q+ S ++ RSSFWY
Sbjct: 984 AVGRTQEIYAWHVRIFNQYYQGSLSWYQYCLQQQDGVPSSINPIEPHRSSFWY 1017
BLAST of Spg015089 vs. NCBI nr
Match:
RVW23683.1 (hypothetical protein CK203_097861 [Vitis vinifera])
HSP 1 Score: 74.3 bits (181), Expect = 1.4e-09
Identity = 78/234 (33.33%), Postives = 100/234 (42.74%), Query Frame = 0
Query: 12 SRNSNDDDDDSTDDGNTSGGGGTNVGTSSGYHTGEGQSSQPGVSPFSCEVGFDHVTQDED 71
S + D TDDG + GG N E Q SQ VS F+CE F H TQDED
Sbjct: 583 SASGYDGSRGGTDDGGDNAGGDIN----------ERQHSQYPVSQFTCENTFTHCTQDED 642
Query: 72 HGSREGGEGIAAIGKPFYRQRDANYFYSTQSDENSLISSMETMIIS-------------- 131
HGSR G GI AIGKP YR R+ +E L+ S E+M I
Sbjct: 643 HGSRRAGPGIGAIGKP-YRGRER---MMEPYNEELLLGSFESMSIGTQFSDSSNEANVYP 702
Query: 132 ---------SNNTQQGYGQGMYSYSN-------YEDSSSLGYSNIEPRFSQPTHEMYPPI 191
S++T + YG YS S Y+ LG N F P H +
Sbjct: 703 PHVMSYGQPSSSTDEEYGMSRYSPSRQMSYQVPYQMEGGLGI-NTWVNFEYPIH-----V 762
Query: 192 GSICWPYESYRYHLDNFLQNYQYRMTWEQYCNFYQNYQNSG---LDAPRSSFWY 213
++ E Y +H+ F Q Y+ ++W QYC Q+ S ++ RSSFWY
Sbjct: 763 EAVGRTQEIYAWHVRIFNQYYRGSLSWYQYCLQQQDGVPSSINPIEPHRSSFWY 796
BLAST of Spg015089 vs. ExPASy TrEMBL
Match:
A0A2P6SPT5 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0383751 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 4.7e-11
Identity = 73/225 (32.44%), Postives = 98/225 (43.56%), Query Frame = 0
Query: 2 RMRKRRLTAKSRNSNDDDD--------DSTDDGNTSGGGGTNVGTSSGYHTGEGQSSQPG 61
R+ + +++D DD DS+DDG GG GT G G GQSS
Sbjct: 71 RVLSEEVVKNPEDNSDSDDAWGGTATPDSSDDGG-DGGSGTGGG---GERYEYGQSSVDE 130
Query: 62 VSPFSCEVGFDHVTQDEDHGSREGGEGIAAIGKPFYRQRDANYFYSTQSDENSLISSMET 121
F+CE FDHVTQDEDHG R G G + + R A ST SD +S+ S ++
Sbjct: 131 GFQFTCECNFDHVTQDEDHGVRTAGHGAEEKTRYGRKTRGAIDDQSTPSDVSSIALSFDS 190
Query: 122 MIIS------SNNTQQGYGQGMYSYSNYEDSSSLGYSNIEPRFSQPTHEMYPPIGSI-CW 181
+ + SN + +G Q Y Y Y + + S H YP IG
Sbjct: 191 ISLGTERSGISNESHEGNNQFGYDAYGYNQ-----YGEVYDQSSSWVHPSYPLIGKTDSS 250
Query: 182 PYESYRYHLDNFLQNYQYRMTWEQYCNFYQNYQNSGLDAPRSSFW 212
E Y YH+ ++ +Y M+W YC F Q + PR SFW
Sbjct: 251 SKEIYNYHVHHYNSHYMGHMSWSDYCIFVD--QRAAFQPPRVSFW 284
BLAST of Spg015089 vs. ExPASy TrEMBL
Match:
A0A2P6PHQ7 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0239421 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 63/187 (33.69%), Postives = 85/187 (45.45%), Query Frame = 0
Query: 28 TSGGGGTNVGTSSGYHTGEGQSSQPGVSPFSCEVGFDHVTQDEDHGSREGGEGIAAIGKP 87
T+ G GT G G GQSS G F+CE FDH TQDEDHG R G G +
Sbjct: 52 TTAGSGTGGG---GERYEYGQSSVDGGFQFTCEGNFDHATQDEDHGVRTAGHGAQEKTRY 111
Query: 88 FYRQRDANYFYSTQSDENSLISSMETMIISSNNTQQGYGQGMYSYSNYEDSSSLGYSNIE 147
R R A ST SD +S+ S ++ IS + G + +N + GY+
Sbjct: 112 GSRTRGATNDQSTPSDVSSIALSFDS--ISLGTERSGISNESHESNNQFGYDAYGYNQYG 171
Query: 148 PRFSQPT---HEMYPPIG-SICWPYESYRYHLDNFLQNYQYRMTWEQYCNFYQNYQNSGL 207
+ Q + H YP IG ++ E Y YH+ ++ +Y M+W YC F Q +
Sbjct: 172 EVYDQSSSWVHPYYPLIGETVGSSKEIYNYHVHHYNSHYMGHMSWSDYCIFVD--QRAAF 231
Query: 208 DAPRSSF 211
PR SF
Sbjct: 232 QPPRVSF 231
BLAST of Spg015089 vs. ExPASy TrEMBL
Match:
A0A438JIZ6 (BED-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_011029 PE=4 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 81/233 (34.76%), Postives = 98/233 (42.06%), Query Frame = 0
Query: 12 SRNSNDDDDDSTDDGNTSGGGGTNVGTSSGYHTGEGQSSQPGVSPFSCEVGFDHVTQDED 71
S + D TDDG + GG N E Q SQ VS F+CE F H TQDED
Sbjct: 804 SASGYDGSRGGTDDGGDNAGGDIN----------ERQHSQYPVSQFTCENTFTHCTQDED 863
Query: 72 HGSREGGEGIAAIGKPFYRQRDANYFYSTQSDENSLISSMETMII------SSNNTQ--- 131
HGSR G GI AIGKP YR R+ +E L S E+M I SSN T
Sbjct: 864 HGSRRAGPGIRAIGKP-YRGRER---MMEPYNEELLSGSFESMSIGTQFSDSSNETNVYP 923
Query: 132 ---QGYGQGM------YSYSNYEDSSSLGYS-----------NIEPRFSQPTHEMYPPIG 191
YGQ Y S Y S + Y N F P H +
Sbjct: 924 PHVMSYGQPSSSTDEEYGMSRYSPSRQMSYQVPYQMEGGLGINTWVNFEYPIH-----VE 983
Query: 192 SICWPYESYRYHLDNFLQNYQYRMTWEQYCNFYQNYQNSG---LDAPRSSFWY 213
++ E Y +H+ F Q YQ ++W QYC Q+ S ++ RSSFWY
Sbjct: 984 AVGRTQEIYAWHVRIFNQYYQGSLSWYQYCLQQQDGVPSSINPIEPHRSSFWY 1017
BLAST of Spg015089 vs. ExPASy TrEMBL
Match:
A0A438I0K4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_036784 PE=4 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 73/215 (33.95%), Postives = 100/215 (46.51%), Query Frame = 0
Query: 26 GNTSGGGGTNVGTS-SGYHTGEGQSSQPGVSPFSCEVGFDHVTQDEDHGSREGGEGIAAI 85
G GGT+ G+ +G GE Q SQ +S F+CE F H TQDEDHGSR G GI AI
Sbjct: 607 GYDGSRGGTDDGSDHTGGDIGERQQSQYPMSQFTCENDFTHCTQDEDHGSRRAGPGIGAI 666
Query: 86 GKPFYRQRDANYFYSTQSDENSLISSMETMII------SSNNTQ------QGYGQGM--- 145
GKP+ ++ T +E L S E+M I SSN GYGQ
Sbjct: 667 GKPYKGRKRT----MTSYNEELLSGSFESMSIGTQFSDSSNEANVYPPYVMGYGQPSSST 726
Query: 146 ---YSYSNYEDSSSLGYS---NIEPRFSQPT--HEMYP-PIGSICWPYESYRYHLDNFLQ 205
Y Y ++ + Y ++ F T + YP + ++ E Y +H+ F Q
Sbjct: 727 DEEYGMPTYPSAAQMSYQVPYQMQGGFDMNTWVNLEYPIHVEAVGRTQEIYAWHVRIFNQ 786
Query: 206 NYQYRMTWEQYCNFYQN---YQNSGLDAPRSSFWY 213
Y+ M+W QYC Q+ + ++ RSSFWY
Sbjct: 787 YYRGSMSWYQYCLQQQDEVPSSTNSIEPHRSSFWY 817
BLAST of Spg015089 vs. ExPASy TrEMBL
Match:
A0A438CKD7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_097861 PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 6.7e-10
Identity = 78/234 (33.33%), Postives = 100/234 (42.74%), Query Frame = 0
Query: 12 SRNSNDDDDDSTDDGNTSGGGGTNVGTSSGYHTGEGQSSQPGVSPFSCEVGFDHVTQDED 71
S + D TDDG + GG N E Q SQ VS F+CE F H TQDED
Sbjct: 583 SASGYDGSRGGTDDGGDNAGGDIN----------ERQHSQYPVSQFTCENTFTHCTQDED 642
Query: 72 HGSREGGEGIAAIGKPFYRQRDANYFYSTQSDENSLISSMETMIIS-------------- 131
HGSR G GI AIGKP YR R+ +E L+ S E+M I
Sbjct: 643 HGSRRAGPGIGAIGKP-YRGRER---MMEPYNEELLLGSFESMSIGTQFSDSSNEANVYP 702
Query: 132 ---------SNNTQQGYGQGMYSYSN-------YEDSSSLGYSNIEPRFSQPTHEMYPPI 191
S++T + YG YS S Y+ LG N F P H +
Sbjct: 703 PHVMSYGQPSSSTDEEYGMSRYSPSRQMSYQVPYQMEGGLGI-NTWVNFEYPIH-----V 762
Query: 192 GSICWPYESYRYHLDNFLQNYQYRMTWEQYCNFYQNYQNSG---LDAPRSSFWY 213
++ E Y +H+ F Q Y+ ++W QYC Q+ S ++ RSSFWY
Sbjct: 763 EAVGRTQEIYAWHVRIFNQYYRGSLSWYQYCLQQQDGVPSSINPIEPHRSSFWY 796
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
PRQ60663.1 | 9.6e-11 | 32.44 | hypothetical protein RchiOBHm_Chr1g0383751 [Rosa chinensis] | [more] |
PRQ21456.1 | 4.8e-10 | 33.69 | hypothetical protein RchiOBHm_Chr7g0239421 [Rosa chinensis] | [more] |
RVW90227.1 | 8.1e-10 | 33.95 | hypothetical protein CK203_036784 [Vitis vinifera] | [more] |
RVX08915.1 | 8.1e-10 | 34.76 | hypothetical protein CK203_011029 [Vitis vinifera] | [more] |
RVW23683.1 | 1.4e-09 | 33.33 | hypothetical protein CK203_097861 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2P6SPT5 | 4.7e-11 | 32.44 | Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0383751 PE=4... | [more] |
A0A2P6PHQ7 | 2.3e-10 | 33.69 | Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0239421 PE=4... | [more] |
A0A438JIZ6 | 3.9e-10 | 34.76 | BED-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_011029 PE... | [more] |
A0A438I0K4 | 3.9e-10 | 33.95 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_036784 PE=4 SV=1 | [more] |
A0A438CKD7 | 6.7e-10 | 33.33 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_097861 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |