Spg014964 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014964
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	organ-specific protein S2-like isoform X3
Location	scaffold3: 34846412 .. 34847327 (-)
RNA-Seq Expression	Spg014964
Synteny	Spg014964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAGGTGGATAGGACGATATATGTGCTTTCATTATTGCACATAGAAACTCACAATCTCGATAATATCTTGATCTTGCGATTGAAATTCTTGTGTTTTGCAACCATCATTTACCTTTTGAATCTGAAGCAATAATAAGACACTCAATAAATTGATCTAAATGAATAATGTAAAGCAAACTTGTCTGTCTGTGGGACATGAGAACTGAGTATTTAGATAAGCTACTATCCCAAAAATTTCAAAGATTCCATTAAGAAGCAGGTTAAAGATTATTTCGAGGACTGTAAAATTATTCCTTTCGTTACTAGCTGTCAATATACAGGAAGGGGTTGTGGTATTCCAAGTGAAATCATTGAAGAAGGAACTCGATTTTTAGTGAAGTGATTGAAAAATATGAAAGGGTTTGTCTTCATCGCTATCTTCTCACTTCTATTGGTAGGCAATTCCATTCCTTTCCTTAAACAAGTTTTGAATTTCATGAACATTAATTTTTCTACACCAATCTTGAAAATATTGTGCATTTCTCTCATTTGTTATTAACTTTTTTTTTTCTTTTGCCATCTTATTTGGAGGAATTTAGTTTGCAAGCACAATAGAATCAAGGCACGAGCCGAGCGATCATCACTTGAGAAATTTGATCAAGGATGAGACGTTGTTTGAAGCAACAAAAGATGATCTTATTCATATTTCTTATTCAAATTCCCTTCATCCTGAGAAAAAAGTGGATCGTAATGAAACTTTAGAGCTCGACGATATCGAGTCTCGACCACAAGTCACATTTTTTTCAAATGACATCGAAACAAAAGAGTCCTCATGGGGCACAGTTGATACACATGATGAAAAGCCATTGTTAAGAATTTTGAGCCAAGACCCAATCTCTCTATATCTACAACAACTAATGGAAGCAAAATAA

mRNA sequence

ATGATCAAGTTTGCAAGCACAATAGAATCAAGGCACGAGCCGAGCGATCATCACTTGAGAAATTTGATCAAGGATGAGACGTTGTTTGAAGCAACAAAAGATGATCTTATTCATATTTCTTATTCAAATTCCCTTCATCCTGAGAAAAAAGTGGATCGTAATGAAACTTTAGAGCTCGACGATATCGAGTCTCGACCACAAGTCACATTTTTTTCAAATGACATCGAAACAAAAGAGTCCTCATGGGGCACAGTTGATACACATGATGAAAAGCCATTGTTAAGAATTTTGAGCCAAGACCCAATCTCTCTATATCTACAACAACTAATGGAAGCAAAATAA

Coding sequence (CDS)

ATGATCAAGTTTGCAAGCACAATAGAATCAAGGCACGAGCCGAGCGATCATCACTTGAGAAATTTGATCAAGGATGAGACGTTGTTTGAAGCAACAAAAGATGATCTTATTCATATTTCTTATTCAAATTCCCTTCATCCTGAGAAAAAAGTGGATCGTAATGAAACTTTAGAGCTCGACGATATCGAGTCTCGACCACAAGTCACATTTTTTTCAAATGACATCGAAACAAAAGAGTCCTCATGGGGCACAGTTGATACACATGATGAAAAGCCATTGTTAAGAATTTTGAGCCAAGACCCAATCTCTCTATATCTACAACAACTAATGGAAGCAAAATAA

Protein sequence

MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKVDRNETLELDDIESRPQVTFFSNDIETKESSWGTVDTHDEKPLLRILSQDPISLYLQQLMEAK

Homology

[Close]

BLAST of Spg014964 vs. NCBI nr
Match: XP_022136081.1 (organ-specific protein P4-like [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-11
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKVDRNETLE-- 60
           ++ FASTIESRHEP D   RN+I+DE+L EA K  L        +H EK++D NETL+  
Sbjct: 12  LLLFASTIESRHEPGDRQWRNVIEDESLPEAIKSLL-------PIHSEKEMDCNETLKPK 71

Query: 61  -----LDDIESRPQVTFFSNDIETKESSWGTVDTHDEKPLLRILSQDP-ISLY 106
                + DIE RPQ +F+ NDI+TKES   T    +EKP        P +S+Y
Sbjct: 72  DEKPFVKDIEPRPQASFYPNDIKTKESGSDT----NEKPFAEDFEPRPNLSIY 113

[Close]

BLAST of Spg014964 vs. NCBI nr
Match: XP_022136084.1 (uncharacterized protein LOC111007863 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-09
Identity = 48/99 (48.48%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 1  MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKVDRNETLE-- 60
          ++ FAS IESR EP D   RNLIKDE L EA K  L         H EK +D NETL+  
Sbjct: 13 LLLFASRIESRPEPGDQQGRNLIKDEALLEAIKGLL--------SHSEKNMDCNETLKPE 72

Query: 61 -----LDDIESRPQVTFFSNDIETKESSWGTVDTHDEKP 93
               + DIE RPQ TF+ NDI+TKES        +EKP
Sbjct: 73 DEKLFVKDIEPRPQATFYPNDIKTKESG------RNEKP 97

[Close]

BLAST of Spg014964 vs. NCBI nr
Match: XP_022972554.1 (uncharacterized protein LOC111471093 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 1   MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKV-DRNETLEL 60
           +I  A+TIESRHEP +HH RN I D+ L E  + + IH S  NSL  EK+  D  ETL++
Sbjct: 11  LILLANTIESRHEPGNHHWRNFIDDKLLHEEIQ-EFIH-SDPNSLRYEKETEDCTETLKI 70

Query: 61  DD-------IESRPQVTF---------FSNDIETKESS 82
           +D       IESRPQ TF         FS DIE + S+
Sbjct: 71  EDGKLFVKNIESRPQATFDLDIVKTKLFSKDIELRPSA 106

[Close]

BLAST of Spg014964 vs. NCBI nr
Match: KAG6572028.1 (hypothetical protein SDJN03_28756, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 6.5e-06
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKV-DRNETLEL 60
          +I  A+T+ESR+EP DHH RN I ++ L E   ++ IH S  NSL  EK+  D  ETL+L
Sbjct: 12 LILLANTVESRYEPGDHHWRNFIDNKLLHEEI-EEFIH-SDPNSLLSEKETEDCTETLKL 71

Query: 61 DD-------IESRPQVTFFSNDIETK 79
          +D       +E RPQ TF SN ++TK
Sbjct: 72 EDGKLFVKNLEPRPQATFDSNVVKTK 95

[Close]

BLAST of Spg014964 vs. NCBI nr
Match: XP_022952152.1 (organ-specific protein S2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 8.5e-06
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKV-DRNETLEL 60
          +I  A+TIESRHEP DHH RN I ++ L E   ++ IH S  NSL  EK+  D  ETL++
Sbjct: 12 LILLANTIESRHEPGDHHWRNFIDNKLLHEDI-EEFIH-SDPNSLLSEKETEDCTETLKI 71

Query: 61 DD-------IESRPQVTFFSNDIETK 79
          +D       +E RPQ TF S+ ++TK
Sbjct: 72 EDGKLFVKNLEPRPQATFDSDVVKTK 95

[Close]

BLAST of Spg014964 vs. ExPASy TrEMBL
Match: A0A6J1C2I2 (organ-specific protein P4-like OS=Momordica charantia OX=3673 GN=LOC111007861 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-11
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKVDRNETLE-- 60
           ++ FASTIESRHEP D   RN+I+DE+L EA K  L        +H EK++D NETL+  
Sbjct: 12  LLLFASTIESRHEPGDRQWRNVIEDESLPEAIKSLL-------PIHSEKEMDCNETLKPK 71

Query: 61  -----LDDIESRPQVTFFSNDIETKESSWGTVDTHDEKPLLRILSQDP-ISLY 106
                + DIE RPQ +F+ NDI+TKES   T    +EKP        P +S+Y
Sbjct: 72  DEKPFVKDIEPRPQASFYPNDIKTKESGSDT----NEKPFAEDFEPRPNLSIY 113

[Close]

BLAST of Spg014964 vs. ExPASy TrEMBL
Match: A0A6J1C3A3 (uncharacterized protein LOC111007863 OS=Momordica charantia OX=3673 GN=LOC111007863 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 48/99 (48.48%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 1  MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKVDRNETLE-- 60
          ++ FAS IESR EP D   RNLIKDE L EA K  L         H EK +D NETL+  
Sbjct: 13 LLLFASRIESRPEPGDQQGRNLIKDEALLEAIKGLL--------SHSEKNMDCNETLKPE 72

Query: 61 -----LDDIESRPQVTFFSNDIETKESSWGTVDTHDEKP 93
               + DIE RPQ TF+ NDI+TKES        +EKP
Sbjct: 73 DEKLFVKDIEPRPQATFYPNDIKTKESG------RNEKP 97

[Close]

BLAST of Spg014964 vs. ExPASy TrEMBL
Match: A0A6J1IBX3 (uncharacterized protein LOC111471093 OS=Cucurbita maxima OX=3661 GN=LOC111471093 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 1   MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKV-DRNETLEL 60
           +I  A+TIESRHEP +HH RN I D+ L E  + + IH S  NSL  EK+  D  ETL++
Sbjct: 11  LILLANTIESRHEPGNHHWRNFIDDKLLHEEIQ-EFIH-SDPNSLRYEKETEDCTETLKI 70

Query: 61  DD-------IESRPQVTF---------FSNDIETKESS 82
           +D       IESRPQ TF         FS DIE + S+
Sbjct: 71  EDGKLFVKNIESRPQATFDLDIVKTKLFSKDIELRPSA 106

[Close]

BLAST of Spg014964 vs. ExPASy TrEMBL
Match: A0A6J1GJQ3 (organ-specific protein S2-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111454914 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKV-DRNETLEL 60
          +I  A+TIESRHEP DHH RN I ++ L E   ++ IH S  NSL  EK+  D  ETL++
Sbjct: 12 LILLANTIESRHEPGDHHWRNFIDNKLLHEDI-EEFIH-SDPNSLLSEKETEDCTETLKI 71

Query: 61 DD-------IESRPQVTFFSNDIETK 79
          +D       +E RPQ TF S+ ++TK
Sbjct: 72 EDGKLFVKNLEPRPQATFDSDVVKTK 95

[Close]

BLAST of Spg014964 vs. ExPASy TrEMBL
Match: A0A6J1GJM6 (organ-specific protein S2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454914 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 1  MIKFASTIESRHEPSDHHLRNLIKDETLFEATKDDLIHISYSNSLHPEKKV-DRNETLEL 60
          +I  A+TIESRHEP DHH RN I ++ L E   ++ IH S  NSL  EK+  D  ETL++
Sbjct: 12 LILLANTIESRHEPGDHHWRNFIDNKLLHEDI-EEFIH-SDPNSLLSEKETEDCTETLKI 71

Query: 61 DD-------IESRPQVTFFSNDIETK 79
          +D       +E RPQ TF S+ ++TK
Sbjct: 72 EDGKLFVKNLEPRPQATFDSDVVKTK 95

The following BLAST results are available for this feature:

BLAST of Spg014964 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136081.1	3.9e-11	45.13	organ-specific protein P4-like [Momordica charantia]	[more]
XP_022136084.1	3.7e-09	48.48	uncharacterized protein LOC111007863 [Momordica charantia]	[more]
XP_022972554.1	2.2e-06	45.92	uncharacterized protein LOC111471093 [Cucurbita maxima]	[more]
KAG6572028.1	6.5e-06	46.51	hypothetical protein SDJN03_28756, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952152.1	8.5e-06	46.51	organ-specific protein S2-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Spg014964 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg014964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2I2	1.9e-11	45.13	organ-specific protein P4-like OS=Momordica charantia OX=3673 GN=LOC111007861 PE...	[more]
A0A6J1C3A3	1.8e-09	48.48	uncharacterized protein LOC111007863 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1IBX3	1.1e-06	45.92	uncharacterized protein LOC111471093 OS=Cucurbita maxima OX=3661 GN=LOC111471093...	[more]
A0A6J1GJQ3	4.1e-06	46.51	organ-specific protein S2-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1GJM6	4.1e-06	46.51	organ-specific protein S2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Spg014964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014964.1	Spg014964.1	mRNA