Spg014813 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg014813
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 31739714 .. 31742544 (-)
RNA-Seq ExpressionSpg014813
SyntenySpg014813
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGATGAGTTTGAAGAAGGTGAAAGTTCCTAAAGGTGGGGACTGGGGTCGTGGGGAGTTGGTAACACTTCACGTTTCCAGGTTTATATATATATTTTTTGAGACTACCTATTGCTTTAGAATTTCTTTTCCTCTCGTTATGCTTGTCATGTGATTATTTGATCCTGCTATAGTGCGGTTGTGTTAGATCAATTAGATCTTCTATACTTTAGAAAGTTAGTGGAAGCTAGTAAGTTGTTTTCAAGGCCCTATCGAGTGAGACCTAGTTCTTAAAGAATCAAGAAATTTCTTTAATAAGAGGTGAAATTGGGCGAACTTTTTAGAGTAGGCAACTCCAAGGGAAAAATATTTCCTTAGGATAGATTTGTAATCCAGCTTCATAATAGGTCAAGGAAGTTGGCATTCTAAGGATTGCTTCCAAAACCAAGTATTGGTGTTCCAAGCTTACAGTGATGTCTTTGGACTCATTAGTGTCCTTCAACTTTCATGGACTTCGTGAACCAAGTCTTCAAGATCTTTTCAGACTTGTCCTTGACAATGTTCTTGATGATATGTTGGTTTATTCATAGACCAAGAGTCAAAGCATTTCCTTACGCAGCAAGATCTCAACCTAAGACAAAGGAGATGTTGGGAATTGGTAAAGAATCATGACTGCAACATCAGCTGTCGTTATGACAAGACTATTGTGGTTTGCACTTTCCAACATCTCCTTTATCTTAGGTTGAGATCTTGCTTAACTGAACCTAACCAAACCGTAAACACCCCTATTTCAGACTACTAATTCAAAACGACACAACTTTAGTAACAAACCCAACTGCATTGTGTGGACTTCTTTCTAGAGCGCGCTTTCACAGTAGTTGCAGTAACCCTGCTCGTCCAGTTGCAGTGCACAAGAAGCTTGAAATTTTTGAGGTGCGCATTTCTCCTGTTGCTTTGTCGCCAAGGGTTGCTGATCGAGTAGAAGCTCCTATAGTTTTGTCTTTCAGAATTTCAATTGCTATGTTTGTGTGCAATTTTCACAGTGTTTGAATCACGAGAGGATATTAAGAATGAAAATGCAGGGGCACATAATTAGTTTGGATTCTTTAATCGAAATTTCTTCCGATACCCCCATTGCGTTGGTTAAAATGTCTAGCCAAACGAGTATTCGCTGGTCTTCCTTTCTCTCTTATGGGTTATGTATGCTATAAGGTTTTTGTTCTTTTTTCATGAATTTTGCTGTTCTTTGGTTGCCATTCTTGATGCATGCTTTTGGAGCTAAGTATCACAATCTATCTCATTCAATTAAGACTCTGTTTGGTAATGATTTCGGTCCATTCGATAACTATTTGGTTTAGTTTTTTATTTTTGAAAATTAAGCTTGTTTTCCCTCAATTTACTTCATCCAAATTCCAAAAACAAAAACAATTTTTTGAAAACTAAATAGTTTTCATGGTTTTTGAAACATGAGAAGAAGCTAGATAACAAAACAAAGAAACTTGTAGGGGAAGTAGTGTTTATAAGTTTAATTTTTAAAAACTAAGGCCTATTTGATAACCATTTGATTTTTGGTTTTTGGTTTTTGAAAATTAAGCTTATACACACATACTTCCACCTATAAGTTTCTTGGTTTTAGTATCATTTTTCTACATGGTTTTCAAAAACCAAGTCCAATTTTGAAAAAAAAAAAGTAGTTTTCAAAAACTTTTTTTTGTTTTTAAAATTTGGCTAGGAATTCAAATGCAAATCTAACTAGGATGAAAGTCATGGTAGGAAATCTAGGAGAAAACAAGCATAATTTTCAAAAACCAAATGGTTATCAAACGGGGCCTAAATGATTATCAAACGACCTTCGGTTTTAGTTTTTTTTTTTTTGAAATTTATACTTATTTCCTTATAGAAATGTGGTTTTCACTCTTTCGTAAGAAAGACTTGAATTCTTAGTCAAATTCTAAAAAAGAAAAATTTAAGAATGATTTTTTTTTCCTTTTTATTATCATTTTTTTTTTTGTAGTTTTCAAAAACTTAGCTTGAATTTTAAAAATATTTTTAGAAAGTACATAACGAAACAAAGAAACTCATAAGGGGGAAGTAGTGCATATAAACTGAATTTAAAAAACCAAATGGTCATTACTCGAGTGGTATGTTTGTTTGTTTTTTTCGCGTTGATTCTGTTAATGGATTGGTAGTAAGCATCTTTGTTTTGTTGCAGTGGGCGTTATTAAACTCTTGCTCTAAGATGATGATTGCTTCTGCACTTGGGAGGACTAATCATATTGGTTTATCCCTTTTTCTCTCTCTCAGAAGACATGTTTATTACTGTCAAAACAGTGAATTTGCTTAGTCTTTCTCCCATTTTCTTTTTCTTAAATCCATAGGCATGATTTGTCTCCCTCATTCAAAGCAGCCATTCCACGTTCAGTACAACACAGCCAGATTCAACAACGCCATGATCTTTCAGAGGCTTCCCACAAGGGTACTTCCTATTATCTGAGGCTTCTGAATTTGATTGCTCTCCCGATCTGGTCATTTCAATTTTGGGTTTGTCACTTTAGATTTTCAAAGGCAGTGGACATCCCTATGCTGGTCGTATGGGCTTTAACAATGCTGCATTTAGAAGAGATAATCAGCAACTGAGCTTTAATGATGAATGGCCTGTTGTAAGTATCTCTTTGACCACACATCTGGAAAAAGGTAATACATAAGCATCTCTTTGACCACACATACAATTAGGACTGTTGTAAGTGACTACCATACACTTCCTTGTAGTAAAAATAATTTTCTGTCATCCTTTTTTTTTTTAATCCTTTGTTGAGTTTCTGAAAGGTTCCTGAACTAGAATCATTGTGA

mRNA sequence

ATGACGATGAGTTTGAAGAAGGTGAAAGTTCCTAAAGGTGGGGACTGGGGTCGTGGGGAGTTGGTAACACTTCACGTTTCCAGAGCGCGCTTTCACAGTAGTTGCAGTAACCCTGCTCGTCCAGTTGCAGTGCACAAGAAGCTTGAAATTTTTGAGGTGCGCATTTCTCCTGTTGCTTTGTCGCCAAGGGTTGCTGATCGAGTAGAAGCTCCTATAATTTTCAAAGGCAGTGGACATCCCTATGCTGGTCGTATGGGCTTTAACAATGCTGCATTTAGAAGAGATAATCAGCAACTGAGCTTTAATGATGAATGGCCTGTTGTTCCTGAACTAGAATCATTGTGA

Coding sequence (CDS)

ATGACGATGAGTTTGAAGAAGGTGAAAGTTCCTAAAGGTGGGGACTGGGGTCGTGGGGAGTTGGTAACACTTCACGTTTCCAGAGCGCGCTTTCACAGTAGTTGCAGTAACCCTGCTCGTCCAGTTGCAGTGCACAAGAAGCTTGAAATTTTTGAGGTGCGCATTTCTCCTGTTGCTTTGTCGCCAAGGGTTGCTGATCGAGTAGAAGCTCCTATAATTTTCAAAGGCAGTGGACATCCCTATGCTGGTCGTATGGGCTTTAACAATGCTGCATTTAGAAGAGATAATCAGCAACTGAGCTTTAATGATGAATGGCCTGTTGTTCCTGAACTAGAATCATTGTGA

Protein sequence

MTMSLKKVKVPKGGDWGRGELVTLHVSRARFHSSCSNPARPVAVHKKLEIFEVRISPVALSPRVADRVEAPIIFKGSGHPYAGRMGFNNAAFRRDNQQLSFNDEWPVVPELESL
Homology
[Close]
BLAST of Spg014813 vs. NCBI nr
Match: XP_038888680.1 (uncharacterized protein LOC120078486 [Benincasa hispida] >XP_038888681.1 uncharacterized protein LOC120078486 [Benincasa hispida] >XP_038888682.1 uncharacterized protein LOC120078486 [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-05
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 0 

Query: 36  SNPARPVAVHKKLEIFEVRISPVAL--SPRVADRVEAPIIFKGSGHPYAGRMGFNNAAFR 95
           +NP   V + +  E F V     A      +  R+   I  +   H YAGRMGFN+AA  
Sbjct: 9   ANPIGTVCIPQSKEPFHVLHYNTARFNKSTILQRLHTRISKRTGHHVYAGRMGFNHAASG 68

Query: 96  RDNQQLSFNDEWPVVPELESL 115
           +DNQQLSFNDEWP  P   SL
Sbjct: 69  QDNQQLSFNDEWPPEPFFLSL 89

The following BLAST results are available for this feature:
BLAST of Spg014813 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888680.12.5e-0543.21uncharacterized protein LOC120078486 [Benincasa hispida] >XP_038888681.1 unchara... [more]
BLAST of Spg014813 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg014813 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg014813 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg014813.1Spg014813.1mRNA