Spg014682 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg014682
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionATPase family AAA domain-containing protein
Locationscaffold3: 37406258 .. 37407848 (-)
RNA-Seq ExpressionSpg014682
SyntenySpg014682
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATCGGGTCGGGTCAACAGTGGATCCGAGTTCAATTTCATCGACGGCCCAACAAGGGCCCTACAAATCGACGGCCCACGAAAGCCCTAGCTGAGGCCATGCACTCTCTCTTCCGTCTTCCCCGTAGAAAATTTTTTTTCTTGTTATTCTCCTCAACGCCAGCAGGTTCGATCTTCCCCCCAGTCTTCTTCGTCGTCTTCCTCCTCCCACCAAGCTTCTTCACTCAAATGCAATTTCCACCAATTGAATCTCTCTACAACACCCACCATCGGTACCTTCTTCACTCTCCTCCTCTCCCCTTTTCTTCCCATGTTTCAATTCTTCCTCTTTTTCTTTCACCTCTGAGAATGCTTGCTCTTTGCTGAAAATTTTGATCAGAGTGTCTTGATTGTTGACGCCTGCGATATCTTTCGTTCTGGGGCAGCACCAGGCGAGAGCGTGGCCAAACGAGCTGAGGTTTGTTTCTATAACATGCAATGCAATTACTTAATGTCTGCCTTTTTTGGTTGCTCTTATCTTGTGCATAAGTCAGGCCCGGTGCTTGGTTTCGATGTTTTTCACTCATAATTAGATTCTTCTCCCTGGAATATATGTTTTTCATAGCGAGAGAGTGACAAGACGTTTGCCATTTAGGAGGTGATCATACAAGGCCATGAGAATTATTAAGGAAGTAATGTAGTTTTCACCTTACGTATTTGTGCGGAATGTGTCATATACAGATGCATATAATTACATTTGGGCATATTTCTTTTCTAGAGGGGATACTACTGTTGTATTTCAATTCAATGATCATGTCTACAACTTTACCTCTGATAACCATTGTCTTTACAATAAGATTGACCAAACCATGGTTAGGAATGCGGGTTTTGTGAAATAACCTGTGCCCTCTAGTCTTGGATTGTTGAATGTGATCAAGATTCTGTCGCCTTTTTTAGCATGGGTAATTGTCATGGTAAATTGCACAATCTAACTAGGGATATCTTGATCTCATAGTGGTGTTCTGATCATGATGTTGGTTGGATATCTTAAAACCTCATCGTCATCGTTAAGAAAATGCATATTGTTATGAAAATGTTTTTTTTGGGGAGGATAAGAAACAAAATCATCGATGGGGTGTGATAAAAAACATTTATCCATTTATTGTTATGAAAATGCATATTGTCTAAAGCGCTTTTTAAATATTTTTTATCTGCCAATGTACTGGCTGAAAATTGATGAGGTTAATTGCTTATCAGATGTTGTCTTCAAAAACATTCATGGGAAATTCTATCAATCCAATCTAGCTCTTGCATCGCCCATGTATCCAAAGCAAACCGGTTTAGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATGTCATTTGGTCGTCAATATGTATATTATACACATGCTTCTTCTGCAACCTTCAAAACCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAATCCATGCCAACTGCTAATGCTGTTGTGAGAACTATATTCTATATCAGTATATCTTATACCAATTCAAAAGGTCTTATTGGCATTGATTATCGCTAG

mRNA sequence

ATGGGTAATTGTCATGATGTTGTCTTCAAAAACATTCATGGGAAATTCTATCAATCCAATCTAGCTCTTGCATCGCCCATGTATCCAAAGCAAACCGGTTTAGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATGTCATTTGGTCGTCAATATGTATATTATACACATGCTTCTTCTGCAACCTTCAAAACCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAATCCATGCCAACTGCTAATGCTGTTGTGAGAACTATATTCTATATCAGTATATCTTATACCAATTCAAAAGGTCTTATTGGCATTGATTATCGCTAG

Coding sequence (CDS)

ATGGGTAATTGTCATGATGTTGTCTTCAAAAACATTCATGGGAAATTCTATCAATCCAATCTAGCTCTTGCATCGCCCATGTATCCAAAGCAAACCGGTTTAGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATGTCATTTGGTCGTCAATATGTATATTATACACATGCTTCTTCTGCAACCTTCAAAACCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAATCCATGCCAACTGCTAATGCTGTTGTGAGAACTATATTCTATATCAGTATATCTTATACCAATTCAAAAGGTCTTATTGGCATTGATTATCGCTAG

Protein sequence

MGNCHDVVFKNIHGKFYQSNLALASPMYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTHASSATFKTNKKRTPATRIAKMLRPKKQSMPTANAVVRTIFYISISYTNSKGLIGIDYR
Homology
[Close]
BLAST of Spg014682 vs. NCBI nr
Match: TYK03471.1 (ATPase family AAA domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 4.0e-33
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 6   DVVFKNIHGKFYQSNLALASPMYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTH 65
           +VVF++ HG+FYQSNLAL S MYPKQTGLGDGPVSSPLRTSARPR+RP+S+GR YVYY  
Sbjct: 107 NVVFRSTHGEFYQSNLALTSTMYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYY-- 166

Query: 66  ASSATFKTNKKRTPATRIAKMLRPKKQSMPTANAV 101
            SSATFK +K RTPA RIAK+LRPKKQSMPTANAV
Sbjct: 167 GSSATFKPSKNRTPAVRIAKLLRPKKQSMPTANAV 199

[Close]
BLAST of Spg014682 vs. NCBI nr
Match: KAA0033058.1 (ATPase family AAA domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 4.0e-33
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 6   DVVFKNIHGKFYQSNLALASPMYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTH 65
           +VVF++ HG+FYQSNLAL S MYPKQTGLGDGPVSSPLRTSARPR+RP+S+GR YVYY  
Sbjct: 107 NVVFRSTHGEFYQSNLALTSTMYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYY-- 166

Query: 66  ASSATFKTNKKRTPATRIAKMLRPKKQSMPTANAV 101
            SSATFK +K RTPA RIAK+LRPKKQSMPTANAV
Sbjct: 167 GSSATFKPSKNRTPAVRIAKLLRPKKQSMPTANAV 199

[Close]
BLAST of Spg014682 vs. NCBI nr
Match: XP_023514117.1 (ATPase family AAA domain-containing protein At1g05910 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 9.5e-27
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 27  MYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTHASSATFKTNKKRTPATRIAKM 86
           MYPKQTGLGDGPVSSPLRTSARPRRRP+S+GR YVYY    SA+FK NKKRTPATRIAKM
Sbjct: 1   MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYY--GPSASFKPNKKRTPATRIAKM 60

Query: 87  LRPKKQSMPTANAVVRTIFY 107
           LRPKKQS+PT NAVVRT  Y
Sbjct: 61  LRPKKQSLPTTNAVVRTELY 78

[Close]
BLAST of Spg014682 vs. NCBI nr
Match: XP_023514115.1 (ATPase family AAA domain-containing protein At1g05910 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023514116.1 ATPase family AAA domain-containing protein At1g05910 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 9.5e-27
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 27  MYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTHASSATFKTNKKRTPATRIAKM 86
           MYPKQTGLGDGPVSSPLRTSARPRRRP+S+GR YVYY    SA+FK NKKRTPATRIAKM
Sbjct: 1   MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYY--GPSASFKPNKKRTPATRIAKM 60

Query: 87  LRPKKQSMPTANAVVRTIFY 107
           LRPKKQS+PT NAVVRT  Y
Sbjct: 61  LRPKKQSLPTTNAVVRTELY 78

[Close]
BLAST of Spg014682 vs. NCBI nr
Match: XP_023514118.1 (ATPase family AAA domain-containing protein At1g05910 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 9.5e-27
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 27  MYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTHASSATFKTNKKRTPATRIAKM 86
           MYPKQTGLGDGPVSSPLRTSARPRRRP+S+GR YVYY    SA+FK NKKRTPATRIAKM
Sbjct: 1   MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYY--GPSASFKPNKKRTPATRIAKM 60

Query: 87  LRPKKQSMPTANAVVRTIFY 107
           LRPKKQS+PT NAVVRT  Y
Sbjct: 61  LRPKKQSLPTTNAVVRTELY 78

[Close]
BLAST of Spg014682 vs. ExPASy Swiss-Prot
Match: F4IAE9 (ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana OX=3702 GN=At1g05910 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 27  MYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTHASSA--TFKTNKKRTPATRIA 86
           M+PK++  GDG V+ P+RTS R RRRP   GR Y+YY+  +      +  K RT A++IA
Sbjct: 1   MHPKRSSQGDGSVTKPVRTSDRLRRRPKLHGRSYLYYSSPNMLHNRKRNTKTRTAASQIA 60

Query: 87  KMLRPKKQSMPTANA 100
           KML    +    +NA
Sbjct: 61  KMLHKGNRPARASNA 75

[Close]
BLAST of Spg014682 vs. ExPASy TrEMBL
Match: A0A5A7SR80 (ATPase family AAA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G001680 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 6   DVVFKNIHGKFYQSNLALASPMYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTH 65
           +VVF++ HG+FYQSNLAL S MYPKQTGLGDGPVSSPLRTSARPR+RP+S+GR YVYY  
Sbjct: 107 NVVFRSTHGEFYQSNLALTSTMYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYY-- 166

Query: 66  ASSATFKTNKKRTPATRIAKMLRPKKQSMPTANAV 101
            SSATFK +K RTPA RIAK+LRPKKQSMPTANAV
Sbjct: 167 GSSATFKPSKNRTPAVRIAKLLRPKKQSMPTANAV 199

[Close]
BLAST of Spg014682 vs. ExPASy TrEMBL
Match: A0A5D3BUQ9 (ATPase family AAA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00820 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 6   DVVFKNIHGKFYQSNLALASPMYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTH 65
           +VVF++ HG+FYQSNLAL S MYPKQTGLGDGPVSSPLRTSARPR+RP+S+GR YVYY  
Sbjct: 107 NVVFRSTHGEFYQSNLALTSTMYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYY-- 166

Query: 66  ASSATFKTNKKRTPATRIAKMLRPKKQSMPTANAV 101
            SSATFK +K RTPA RIAK+LRPKKQSMPTANAV
Sbjct: 167 GSSATFKPSKNRTPAVRIAKLLRPKKQSMPTANAV 199

[Close]
BLAST of Spg014682 vs. ExPASy TrEMBL
Match: A0A0A0KB13 (Bromo domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G042330 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 27  MYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTHASSATFKTNKKRTPATRIAKM 86
           MYPKQTGLGDGPVSSPLRTSARPR+RP+S+GR YVYY   SSATFK NKKRTPA RIAK+
Sbjct: 1   MYPKQTGLGDGPVSSPLRTSARPRKRPISYGRPYVYY--GSSATFKPNKKRTPAVRIAKL 60

Query: 87  LRPKKQSMPTANAV 101
           LRPKKQSMPTANAV
Sbjct: 61  LRPKKQSMPTANAV 72

[Close]
BLAST of Spg014682 vs. ExPASy TrEMBL
Match: A0A6J1DAI8 (ATPase family AAA domain-containing protein At1g05910 OS=Momordica charantia OX=3673 GN=LOC111018545 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 27  MYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTHASSATFKTNKKRTPATRIAKM 86
           MYPKQTGLGDGPVSSPLRTSARPRRRP+S+GR YVYY   SS TFK NKKRTPATRIAKM
Sbjct: 1   MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYY--GSSTTFKPNKKRTPATRIAKM 60

Query: 87  LRPKKQSMPTANAV 101
           LRPKKQS+PTAN V
Sbjct: 61  LRPKKQSVPTANVV 72

[Close]
BLAST of Spg014682 vs. ExPASy TrEMBL
Match: A0A6J1H8J9 (ATPase family AAA domain-containing protein At1g05910 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461088 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.3e-25
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 27  MYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTHASSATFKTNKKRTPATRIAKM 86
           MYPKQTGLGDGPVSSPLRTSARPRRRP+S+GR YVYY    SA+FK NKKRTPATRIAKM
Sbjct: 1   MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYY--GPSASFKPNKKRTPATRIAKM 60

Query: 87  LRPKKQSMPTANAV 101
           LRPKKQS+PT NAV
Sbjct: 61  LRPKKQSLPTTNAV 72

[Close]
BLAST of Spg014682 vs. TAIR 10
Match: AT1G05910.1 (cell division cycle protein 48-related / CDC48-related )

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-08
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 27  MYPKQTGLGDGPVSSPLRTSARPRRRPMSFGRQYVYYTHASSA--TFKTNKKRTPATRIA 86
           M+PK++  GDG V+ P+RTS R RRRP   GR Y+YY+  +      +  K RT A++IA
Sbjct: 1   MHPKRSSQGDGSVTKPVRTSDRLRRRPKLHGRSYLYYSSPNMLHNRKRNTKTRTAASQIA 60

Query: 87  KMLRPKKQSMPTANA 100
           KML    +    +NA
Sbjct: 61  KMLHKGNRPARASNA 75

The following BLAST results are available for this feature:
BLAST of Spg014682 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK03471.14.0e-3380.00ATPase family AAA domain-containing protein [Cucumis melo var. makuwa][more]
KAA0033058.14.0e-3380.00ATPase family AAA domain-containing protein [Cucumis melo var. makuwa][more]
XP_023514117.19.5e-2783.75ATPase family AAA domain-containing protein At1g05910 isoform X2 [Cucurbita pepo... [more]
XP_023514115.19.5e-2783.75ATPase family AAA domain-containing protein At1g05910 isoform X1 [Cucurbita pepo... [more]
XP_023514118.19.5e-2783.75ATPase family AAA domain-containing protein At1g05910 isoform X3 [Cucurbita pepo... [more]
BLAST of Spg014682 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4IAE95.1e-0742.67ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana OX... [more]
BLAST of Spg014682 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SR801.9e-3380.00ATPase family AAA domain-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3BUQ91.9e-3380.00ATPase family AAA domain-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0KB131.1e-2586.49Bromo domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G042330 PE=4 ... [more]
A0A6J1DAI81.5e-2586.49ATPase family AAA domain-containing protein At1g05910 OS=Momordica charantia OX=... [more]
A0A6J1H8J94.3e-2585.14ATPase family AAA domain-containing protein At1g05910 isoform X1 OS=Cucurbita mo... [more]
BLAST of Spg014682 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G05910.13.6e-0842.67cell division cycle protein 48-related / CDC48-related [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg014682.1Spg014682.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0042393 histone binding