Spg014661 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014661
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	GAG1At protein
Location	scaffold3: 47049697 .. 47051240 (-)
RNA-Seq Expression	Spg014661
Synteny	Spg014661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCGGACTCCAAAAACACCGTAACCAAACGCTCCCAAAAGGTTTGAGCAATCAGAAAGTGGAGAGCTAGAGGAACATATCACCTCGAGAGATAATCGACGGACAAAATGAGCGGCGAGGCCAAAAGCGGCGGTGCAAGCGGCGGAGGAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTAGCGGCTGGCATCGCCGTCATTGGCATCATTTTCGGCATCCCTTGGGTCCTCATGAACCGAGGTTCGTTCTTCTTTTTCCTTTTCCAATTTTTGTTTCTGTTACTCTATCTCCGATGTTTTGTTTGGCTGCTGAGAGAAATTGTATTGTGAAAAAACAGAATTGAACTCTTCAGGTAATTGTGTTTTTGTTAGTCCGGGATTTGAAGAAGCGAGACCTTAGAATATTGATGTGTGTAGTGCGCTATTCTTGAATGGAGTTCTGTTTTGAACTTACTTCGACCAAACTGGGAATTTAGCAATCTTTGGATTGCAATAGTGGACATTTGGAAGTATGTTCGTGTAATTTAGGGATTTAGAATCTGAGCAGGTTCAATTAGATATGCATATGCTTAATCTTGCTGGCTTTTGGCACTGGGTGAATTAGGGTTTAGAAATTGTAAGTTTTGCTGTTGGGATGCTCCTGTAATTTGGGTTGAGAAACGGCAGCTTTCTGGGCAATATCATTGAGGATTTTGATGATACTGATTTTTCGAACTTCAGAAAGATTCCAAGAGAAATCAAAAAGTGATGATGCCTTGCGGCTGTATGGGAGATGCTCTAGAACAACATATTTGAGTGATAATGTCTTTAAAAAGTTTGTTTCTCGGTTAACTTTTAGTTTGTTTTCATTGTTGATTTAGTTTTAGCTTTGACTATTTTTTTTTAAGTAACTTCCAAACGACCTCTGCTTGTGTAGAACTATTATCACTTTCAAAATCTAATAGGTGGTGCAATGAAAATACTTTCCTTGTTCATTTTCGGCATTCAAATCTACACCCGACAGATCTATTTTCCTTTTGTTTAAAGAAAGAAAAGTTAACAACTATGTCGAGGTTTTGTTTAAATTGGATCAGGATGACTACTTAAATCTGCATGATGAATAGCCACTTAATTGTTTGCAGGATCAAAACATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGATTTTTCCTTTTTCGCTTTCTTCTGATAGAGGATGTTCCTTGGGGCACTTGGTTGGCATAAAAATTTTGTAATAGCTCCTGTAATTTGCATTTTTCCCTCCCTCTGCTGACATTAAATGAAGACAAGTTATACTCACCAAGGTACACTTACGGTTATGAAATAAAGGACGGATTTTTTGTTCCTTTTTATACTATTTAGTCCCTTTTACTTCCCTTTCTATCCTAGTTTTAGTGTTGAAATGTTTCTTACATTGAGAGTCAATGGTACGTGAACAAATTTCAAGGAATTATTCACTTAGAGTTATG

mRNA sequence

ATGAGCGGCGAGGCCAAAAGCGGCGGTGCAAGCGGCGGAGGAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTAGCGGCTGGCATCGCCGTCATTGGCATCATTTTCGGCATCCCTTGGGTCCTCATGAACCGAGGATCAAAACATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Coding sequence (CDS)

ATGAGCGGCGAGGCCAAAAGCGGCGGTGCAAGCGGCGGAGGAGGTGGTTTCAGATCGAGAATGGAGCACTATTTATACAGCGGCGATAAAAAGCACGTAGCGGCTGGCATCGCCGTCATTGGCATCATTTTCGGCATCCCTTGGGTCCTCATGAACCGAGGATCAAAACATCAGTCTCATCAAGATTACATGGAAAGAGCTGATAAAGCACGAAGTCAGAGACTCTCTTCAGGTTCATCATCAGCTAAATGA

Protein sequence

MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSHQDYMERADKARSQRLSSGSSSAK

Homology

[Close]

BLAST of Spg014661 vs. NCBI nr
Match: XP_022953259.1 (uncharacterized protein LOC111455862 [Cucurbita moschata] >XP_023547796.1 uncharacterized protein LOC111806650 [Cucurbita pepo subsp. pepo] >KAG6575633.1 hypothetical protein SDJN03_26272, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014187.1 hypothetical protein SDJN02_24361 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 7.1e-34
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          MSGEAKSGG+ GGGGGFRSRMEHYLYSG+KKHVAAGI VIGIIFGIPW LMNRGSKHQSH
Sbjct: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Spg014661 vs. NCBI nr
Match: XP_004135879.1 (uncharacterized protein LOC101214375 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          MSGEAKSGGASGG GGFRSRMEHYLYSGDKKHVAAGI + GIIFGIPW LMNRGSKH+SH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEHYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Spg014661 vs. NCBI nr
Match: XP_022992483.1 (uncharacterized protein LOC111488802 [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          MSG+AKSGG+ GGGGGFRSRMEHYLYSG+KKHVAAGI VIGIIFGIPW LMNRGSKHQSH
Sbjct: 1  MSGDAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Spg014661 vs. NCBI nr
Match: XP_008461185.1 (PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo] >KAA0058705.1 hypothetical protein E6C27_scaffold339G001750 [Cucumis melo var. makuwa] >TYK10511.1 hypothetical protein E5676_scaffold459G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          MSGEAKSGGASGG GGFRSRME+YLYSGDKKHVAAGI + GIIFGIPW LMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Spg014661 vs. NCBI nr
Match: XP_038897164.1 (uncharacterized protein LOC120085312 isoform X2 [Benincasa hispida])

HSP 1 Score: 143.3 bits (360), Expect = 9.5e-31
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          MSGEAK GGA+GG GGFRSRMEHYLYSG+KKHVAAGI VIGIIFGIPWVLMNRGSKHQSH
Sbjct: 1  MSGEAKRGGATGGAGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWVLMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSS 78
          QDYME+ADKARSQRLSS
Sbjct: 61 QDYMEKADKARSQRLSS 77

[Close]

BLAST of Spg014661 vs. ExPASy TrEMBL
Match: A0A6J1GP50 (uncharacterized protein LOC111455862 OS=Cucurbita moschata OX=3662 GN=LOC111455862 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          MSGEAKSGG+ GGGGGFRSRMEHYLYSG+KKHVAAGI VIGIIFGIPW LMNRGSKHQSH
Sbjct: 1  MSGEAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Spg014661 vs. ExPASy TrEMBL
Match: A0A6J1JZC0 (uncharacterized protein LOC111488802 OS=Cucurbita maxima OX=3661 GN=LOC111488802 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.6e-34
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          MSG+AKSGG+ GGGGGFRSRMEHYLYSG+KKHVAAGI VIGIIFGIPW LMNRGSKHQSH
Sbjct: 1  MSGDAKSGGSIGGGGGFRSRMEHYLYSGEKKHVAAGIVVIGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Spg014661 vs. ExPASy TrEMBL
Match: A0A5D3CFG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001610 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.9e-34
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          MSGEAKSGGASGG GGFRSRME+YLYSGDKKHVAAGI + GIIFGIPW LMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Spg014661 vs. ExPASy TrEMBL
Match: A0A1S3CEK3 (uncharacterized protein LOC103499845 OS=Cucumis melo OX=3656 GN=LOC103499845 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.9e-34
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          MSGEAKSGGASGG GGFRSRME+YLYSGDKKHVAAGI + GIIFGIPW LMNRGSKHQSH
Sbjct: 1  MSGEAKSGGASGGAGGFRSRMEYYLYSGDKKHVAAGIVIFGIIFGIPWALMNRGSKHQSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDYMERADKARSQRLSSGSSSAK
Sbjct: 61 QDYMERADKARSQRLSSGSSSAK 83

[Close]

BLAST of Spg014661 vs. ExPASy TrEMBL
Match: A0A6J1DAT5 (uncharacterized protein LOC111018966 OS=Momordica charantia OX=3673 GN=LOC111018966 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30
Identity = 76/90 (84.44%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGG-------GFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNR 60
          M GE K GGASGGGG       GFRSRMEH+LYSGDKKHVAAGIAVI IIFGIPWVLM+R
Sbjct: 1  MGGEGKIGGASGGGGGGGGGGAGFRSRMEHFLYSGDKKHVAAGIAVISIIFGIPWVLMSR 60

Query: 61 GSKHQSHQDYMERADKARSQRLSSGSSSAK 84
          GSKHQSHQDYMERADKARSQRLSSGSS AK
Sbjct: 61 GSKHQSHQDYMERADKARSQRLSSGSSQAK 90

[Close]

BLAST of Spg014661 vs. TAIR 10
Match: AT1G80890.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16000.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-25
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MSGEAKSGGASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKHQSH 60
          M  E+KS   + GGGG R++MEHY+YSG+KKHV AGI +I IIFGIPW LMN+GSKH+SH
Sbjct: 1  MGNESKS---NLGGGGIRAKMEHYVYSGEKKHVLAGIGIISIIFGIPWYLMNQGSKHRSH 60

Query: 61 QDYMERADKARSQRLSSGSSSAK 84
          QDY+E+ADKAR  RLSS SSS K
Sbjct: 61 QDYLEKADKARKARLSSSSSSDK 80

[Close]

BLAST of Spg014661 vs. TAIR 10
Match: AT1G16000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.2 bits (274), Expect = 8.3e-25
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MSGEAKSGG---ASGGGGGFRSRMEHYLYSGDKKHVAAGIAVIGIIFGIPWVLMNRGSKH 60
          M  E K+ G   +  GGGGFR++MEHY+YSG+KKHV  GI ++ IIFG+PW LM +GSKH
Sbjct: 1  MGNETKTNGGPASMAGGGGFRAKMEHYVYSGEKKHVLVGIGIVTIIFGVPWYLMTQGSKH 60

Query: 61 QSHQDYMERADKARSQRLSSGSSSAK 84
          QSHQDYM++ADKAR  RLSS SS+ K
Sbjct: 61 QSHQDYMDKADKARKARLSSSSSANK 86

The following BLAST results are available for this feature:

BLAST of Spg014661 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953259.1	7.1e-34	93.98	uncharacterized protein LOC111455862 [Cucurbita moschata] >XP_023547796.1 unchar...	[more]
XP_004135879.1	1.2e-33	92.77	uncharacterized protein LOC101214375 [Cucumis sativus]	[more]
XP_022992483.1	1.6e-33	92.77	uncharacterized protein LOC111488802 [Cucurbita maxima]	[more]
XP_008461185.1	2.1e-33	92.77	PREDICTED: uncharacterized protein LOC103499845 [Cucumis melo] >KAA0058705.1 hyp...	[more]
XP_038897164.1	9.5e-31	92.21	uncharacterized protein LOC120085312 isoform X2 [Benincasa hispida]	[more]

BLAST of Spg014661 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg014661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GP50	3.4e-34	93.98	uncharacterized protein LOC111455862 OS=Cucurbita moschata OX=3662 GN=LOC1114558...	[more]
A0A6J1JZC0	7.6e-34	92.77	uncharacterized protein LOC111488802 OS=Cucurbita maxima OX=3661 GN=LOC111488802...	[more]
A0A5D3CFG0	9.9e-34	92.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEK3	9.9e-34	92.77	uncharacterized protein LOC103499845 OS=Cucumis melo OX=3656 GN=LOC103499845 PE=...	[more]
A0A6J1DAT5	1.0e-30	84.44	uncharacterized protein LOC111018966 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Spg014661 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80890.1	1.7e-25	68.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G16000.1	8.3e-25	62.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..83
None	No IPR available	PANTHER	PTHR35990	GAG1AT PROTEIN	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014661.1	Spg014661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane