Spg014616 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014616
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LITAF domain-containing protein
Location	scaffold3: 41610010 .. 41613264 (+)
RNA-Seq Expression	Spg014616
Synteny	Spg014616

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTCTTCTTCCTTTGGTTTTTTTAGAATTTTTTTTACGAGAAATTTCGCGTCTTCTCTTTTGCTTGGAATCGTAATTCTCTGAAAGCCGAAAGGGCCGTTTCTCGTTTTCCGTTTTTCTTCAAGTTCTTCTTCAACAAGTTTCAGAATCGCCGGCAGAGCAGCAGAGAGACAGAGATCAAAGCTTAGGGAAAATGTCGAAGAACGACGAGCCGGTCGTCGGAGTTCCATTCTATGTGGAGAACAACGTGTATCAGGCCGGACAGATCCCACCGAACGCCATTTTTGGCGATCCTCAGGGCGTTCCTATCCAGCAAACCATGTACCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTCACCGACATCAGGTGCCTTTTCTACCTTCTCTCTAGCACTGCGTCTAGGTTATTTTTCTCCTGTCTTTGATCTGTTTGAAATTCTGTGTTTAATTATTGCGTTAATTGCCGTTCTGTTTCTCGATGATAATCCCCTCTCGGAAAATAATGGAAATTGGTAGCTTTAATCGAATTGGCAATGAAATTTTCGAATTCGTTTATTGAAACTTGTATGTGATTGATCAATGGGCCTTCCCCATATTTGTCTTTGACCTAATTTCTTCTTTAGGATTAAATTTTGTGAGCCACGGAACTTCGTCTTGCTTACAACACAAGGCAGGAATTGTGAAATGATTTGAGTGACTTTTACCCTATATAATTACATTGCTTGGATGTTTAAACACCTGTTTCTGTTTTATAAAGTATACTGTTTTTCGCTTATATTTATTTCAAAATCCATTCAATTACGTGTACCAGATTGTGGTAATCTTGAGCGATTGCTGTTTTTGTTTGGTTTCTTCTCCCTATGAATAAATCTAATTGTTTCCACGGCAGTTGCTTTGGTTTTGAATTTGTTTAAATACTCAGTTAGGACGCAGGTGCAAGGTGATAAAAATTGAAGGGTTACCATAGCGCTGATAACTAATAGCTAGACCATACAAAGTCTTGTTTGGCTATAAATACTTTTTAATGTTAAAAACATCCAAATGACTTTTACTTTAGATTCTCTCTATCTAAAAAAAATAGCATTACAGGGAGTGTGGGAGCATTAATTTGCATTGCAACAGGGGCACTTGAAATTTTATCTTGCTGGGTTTTTCAATCAAATCTAAATTTTTGGTATTGCATTGAAATTTATGTCTTGTTTATTCTTGGTTCAACATCAACAATGACAATTACAATAATAGCATAAATCAAGTAGGTTTTCCATTTTACCATCTTAGTTTTTAGTGGGAGCTGCATAAAGAAATATAAGTCCAAATGTTAGGTTTATATACACTCTTAAAAAATGTTGTTGCTCATAAGCTCAAGACTTCTTGTAGTAGGGGCAGCAATATAATCGATCATGGTTGGGAAGCCAGAGTTTCTGTATATTTATTTTGTCTAAGAAGATATAGAAAGGGGGGATAGGTCATAGGTGGATTTGTATGTTTATGTTCGGTCAATAAATATGCTTCTTCTTCATCTGGTTATGCTACTTTTTTGACCTACAGATCAAAGATAAGTTCAGCTGCTTTCATTGGTTGTATGGTGCCTTTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTACCACTATTGCCCCAGCTGCAAGGAAAAGGTATGACTATTTTCTGGTCATTTTTCATTATGTCAGTTCTTGTAATCTACATTTCTGATAGAGCCAAGTACATGATTGAAGTAATTAACTATACTATCCATCTTTTGATTAGGTTGGTGATTTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACCCAGCCAAGCTTTGCATTGCCTGCTTGATTTTCATGAGCTGCTATTTTTCTGTGTGGTGATTTTGCATTGTCTGCAGTCAGTATTTGCTATACTCTTGTGCTCTTTTTGAGATGTTCTTGTTACATTTAGGAATAGGCAAAGATTGGGTATCAGTGCATGTGTACAATTCTGATAGAACCAAGTACATGATTTTTATATCATACTGCTTGTAAATACCTTGTCCTTACATTGGACTTACGGTTTATATAAAATACTGCTAGCCTAATTTGGATGAAACATTTCATAGACCTCTTGAGCATTCACCTCAAAAGTCAAAATGGTATACGTTTGTCCAATTAATTTCCGGTGGCTATTTAGTATCTGCATCTCCTAGCGCCATTTGTTTTAACTTCTCAAATTACATTTTAACCATGCACCTTGACCTCACCATTTGGATGAATCATCGGTGGGGTTTTCTTTTTCTTCTTTAATTGGTTACTGGAAGACTCGAATTCTGGTCAGTGATGACACTATCTGATCTGGTACCACACAAGTAACACAATGAAGAAACATCATGGAAAGTATAATATACCTGAGTTCATTTGGATCTTGCTCAGAAGCAGATGCAGGGAAAAGAATCCAAGTCGATTGCCGAGGTTCTCAATGTGGAAGCGAAGGTTCAGCATGAGCAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCACGGTATGACATAGCAGCAGCAGGGAGAGGGGTCTTCACAAAACTTGATGATGGCAGCTTTTACAGATCCCTTCATGGAGTTGCAGCGTGCAGGCAAGTCATCCTTGGCTACAACACATGACTCTCCATTCCCATGTTGAACCTTCCTTCCTTCCTTCCTTCCTTGCTCATAAATCAGGTAGAATTACAGCCTCCGTCTTATGTTGAATGCCAAAAGTGCAGTCCTTTTGAACCAAAAGGAAAATTTTATGTATGTATGTATATATGTATATATGTATGTATGTCTTGTTGTGTGTGCATTGGAGTTTGGTTCATATGTTTAAAATCAGCAGGAGCTCCACAACAATATACTGCACTCTACACTCACCGAGGTTTCTGTCTTGGAATATATTCTGTATAATTGGACTTGTAAAATTGTTCTTGGCTATTTCTATAGATCATGCCCCCCCAGCCCCTATTTTCAGAGAATCTTTTTATGCCTCACCGTAGAGACGACAATTGACTCTTTGTCCTCACTTTCAACCTACAATACACTGAACGAAAAATACCCACACAAAAGAGATTATTATAAATTATTATATCTCTGTATCACTTATTTTTATTACAATTGATCTATATACTATTACGTGTAATGATATTAGAATGCTATGCTTTTTCATTATTGTAAACTAGATAAATCACAG

mRNA sequence

ATGTCGAAGAACGACGAGCCGGTCGTCGGAGTTCCATTCTATGTGGAGAACAACGTGTATCAGGCCGGACAGATCCCACCGAACGCCATTTTTGGCGATCCTCAGGGCGTTCCTATCCAGCAAACCATGTACCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTCACCGACATCAGATCAAAGATAAGTTCAGCTGCTTTCATTGGTTGTATGGTGCCTTTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTACCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACCCAGCCAAGCTTTGCATTGCCTGCTTGA

Coding sequence (CDS)

ATGTCGAAGAACGACGAGCCGGTCGTCGGAGTTCCATTCTATGTGGAGAACAACGTGTATCAGGCCGGACAGATCCCACCGAACGCCATTTTTGGCGATCCTCAGGGCGTTCCTATCCAGCAAACCATGTACCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTCACCGACATCAGATCAAAGATAAGTTCAGCTGCTTTCATTGGTTGTATGGTGCCTTTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTACCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACCCAGCCAAGCTTTGCATTGCCTGCTTGA

Protein sequence

MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

Homology

[Close]

BLAST of Spg014616 vs. NCBI nr
Match: XP_004140553.1 (GSH-induced LITAF domain protein [Cucumis sativus] >KGN46422.1 hypothetical protein Csa_005550 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 3.4e-70
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVP YV NN YQAGQIPPNAIFGDP GVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT IRSKISSAA +GCM+PFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSFALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Spg014616 vs. NCBI nr
Match: KAA0039847.1 (zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa] >TYK24652.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 4.4e-70
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVP YV NN YQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSFALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Spg014616 vs. NCBI nr
Match: XP_038906445.1 (GSH-induced LITAF domain protein [Benincasa hispida])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKNDEPVVG+P Y  NN YQAGQIP NAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG
Sbjct: 1   MSKNDEPVVGIPLYDGNNPYQAGQIPSNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTD+RSKISSAA +GCM PF+LGVCFL PSMDCLWHKYHYCPSCKEKVGDFEK+DRCAVM
Sbjct: 61  LTDVRSKISSAAVVGCMTPFLLGVCFLFPSMDCLWHKYHYCPSCKEKVGDFEKMDRCAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPP+WTQPSFALPA
Sbjct: 121 DPPNWTQPSFALPA 134

[Close]

BLAST of Spg014616 vs. NCBI nr
Match: XP_008459901.1 (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 121/133 (90.98%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVP YV NN YQAGQIPPN IFGDPQGVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSFALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Spg014616 vs. NCBI nr
Match: XP_022991744.1 (GSH-induced LITAF domain protein [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 120/134 (89.55%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKNDEPVVG+PFYV NN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNSYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQPSFALPA
Sbjct: 121 DPPHWTQPSFALPA 134

[Close]

BLAST of Spg014616 vs. ExPASy Swiss-Prot
Match: Q94CD4 (GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-55
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           M+K    V+GVP+Y   N YQAG +PPNAI+GDP G PIQQT+YRDTPAPF C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT++RSK   AA + CM+PFMLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPP W QPSFALPA
Sbjct: 121 DPPQWKQPSFALPA 134

[Close]

BLAST of Spg014616 vs. ExPASy Swiss-Prot
Match: Q9JLJ0 (Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Mus musculus OX=10090 GN=Litaf PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.4e-04
Identity = 28/101 (27.72%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 20  YQAGQIP-PNAIFGDPQGVPIQQTM-YRDTPAPFYCVYCGNSGLTDIRSKISSAAFIG-- 79
           Y    +P PNA     Q V +QQ + + D P    C  C    +T +     +  ++   
Sbjct: 61  YYTQPVPVPNANAIAVQTVYVQQPVSFYDRPVQMCCPSCSKMIVTQLSYNAGALTWLSCG 120

Query: 80  --CMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL 115
             C++  + G CF+   +D L    HYCP+CK  +G +++L
Sbjct: 121 SLCLLGCVAGCCFIPFCVDALQDVDHYCPNCKALLGTYKRL 161

[Close]

BLAST of Spg014616 vs. ExPASy Swiss-Prot
Match: P0C0T0 (Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Rattus norvegicus OX=10116 GN=Litaf PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.7e-04
Identity = 28/101 (27.72%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 20  YQAGQIP-PNAIFGDPQGVPIQQTM-YRDTPAPFYCVYCGNSGLTDIRSKISSAAFIG-- 79
           Y    +P PNA     Q V +QQ + + D P    C  C    +T +     +  ++   
Sbjct: 61  YYTQPVPVPNANAIAVQTVYVQQPISFYDRPIQMCCPSCNKMIVTQLSYNAGALTWLSCG 120

Query: 80  --CMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL 115
             C++  + G CF+   +D L    HYCP+CK  +G +++L
Sbjct: 121 SLCLLGCVAGCCFIPFCVDALQDVDHYCPNCKALLGTYKRL 161

[Close]

BLAST of Spg014616 vs. ExPASy TrEMBL
Match: A0A0A0KDG7 (LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.6e-70
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVP YV NN YQAGQIPPNAIFGDP GVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT IRSKISSAA +GCM+PFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSFALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Spg014616 vs. ExPASy TrEMBL
Match: A0A5D3DMB0 (Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002020 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.1e-70
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVP YV NN YQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSFALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Spg014616 vs. ExPASy TrEMBL
Match: A0A1S3CCH3 (uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.1e-70
Identity = 121/133 (90.98%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKN EPVVGVP YV NN YQAGQIPPN IFGDPQGVPIQQTMYRDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSFALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Spg014616 vs. ExPASy TrEMBL
Match: A0A6J1JVN9 (GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 120/134 (89.55%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKNDEPVVG+PFYV NN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNSYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQPSFALPA
Sbjct: 121 DPPHWTQPSFALPA 134

[Close]

BLAST of Spg014616 vs. ExPASy TrEMBL
Match: A0A6J1GS01 (GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 120/134 (89.55%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           MSKNDEPVVG+PFYV NN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQPSFALPA
Sbjct: 121 DPPHWTQPSFALPA 134

[Close]

BLAST of Spg014616 vs. TAIR 10
Match: AT5G13190.1 (CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 215.7 bits (548), Expect = 2.3e-56
Identity = 92/134 (68.66%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 1   MSKNDEPVVGVPFYVENNVYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSG 60
           M+K    V+GVP+Y   N YQAG +PPNAI+GDP G PIQQT+YRDTPAPF C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT++RSK   AA + CM+PFMLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPP W QPSFALPA
Sbjct: 121 DPPQWKQPSFALPA 134

The following BLAST results are available for this feature:

BLAST of Spg014616 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140553.1	3.4e-70	91.73	GSH-induced LITAF domain protein [Cucumis sativus] >KGN46422.1 hypothetical prot...	[more]
KAA0039847.1	4.4e-70	91.73	zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa] >TYK24652.1 z...	[more]
XP_038906445.1	1.7e-69	89.55	GSH-induced LITAF domain protein [Benincasa hispida]	[more]
XP_008459901.1	1.7e-69	90.98	PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]	[more]
XP_022991744.1	2.9e-69	89.55	GSH-induced LITAF domain protein [Cucurbita maxima]	[more]

BLAST of Spg014616 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CD4	3.2e-55	68.66	GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV...	[more]
Q9JLJ0	4.4e-04	27.72	Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Mus mus...	[more]
P0C0T0	5.7e-04	27.72	Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Rattus ...	[more]

BLAST of Spg014616 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG7	1.6e-70	91.73	LITAF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=3 ...	[more]
A0A5D3DMB0	2.1e-70	91.73	Zf-LITAF-like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CCH3	8.1e-70	90.98	uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=...	[more]
A0A6J1JVN9	1.4e-69	89.55	GSH-induced LITAF domain protein OS=Cucurbita maxima OX=3661 GN=LOC111488277 PE=...	[more]
A0A6J1GS01	1.4e-69	89.55	GSH-induced LITAF domain protein OS=Cucurbita moschata OX=3662 GN=LOC111456579 P...	[more]

BLAST of Spg014616 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13190.1	2.3e-56	68.66	CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (Inte...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 48..113 e-value: 9.8E-13 score: 58.3
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 46..110 e-value: 2.3E-13 score: 50.2
IPR006629	LPS-induced tumour necrosis factor alpha factor	PROSITE	PS51837	LITAF	coord: 33..113 score: 11.666648
IPR037519	LITAF domain containing protein	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	coord: 3..126
None	No IPR available	PANTHER	PTHR23292:SF37	BNAC09G43880D PROTEIN	coord: 3..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014616.1	Spg014616.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding