Spg014482 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014482
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	SKP1-like protein
Location	scaffold3: 32041049 .. 32042045 (-)
RNA-Seq Expression	Spg014482
Synteny	Spg014482

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCATCGAAGAAGAAGATCGTCCTGAAGAGTTCCGATGGTGAAACCTTCGTCGTGGACAAAGCCGTGGCGGTCCAGTTTAAGATAATCGAGGACGTGATCGAGAAAGATGGCGCGGAGACCATGATCCCCTTGCCGAATGTCAAGGGTTCAATTCTTGACAAGGTAATTGAGTTCTGTAAGAAGCATGCTGCCGAGACTGAGGACAGTCTTGAAGCATGGGATGCTGAATTTGTCAAGCTTGATCATGATACTCTCTTTGATCTCATCTTGGTATAAGTTTCTTTTATCCTCCTACCTCTCTGTTTTTGCTTTTCCTTTTTGATATTTATCCTTTTTTTTCACTTGATAATTGATACTTTCTATTTTATCAACACGAAAATCCATATATGATCTTGACTATTTTTAGTTTCTTGACTATTTTTTATTGTAACCAAATCTTTCTAGCTATTTCTCACAATACGTGGCTTTTCAATCTTCAAGATTATCTGGGTGAAACGTGACGACTTGCAAGTGTGGTAGTTCATGCATGGTTAAATATCCACAAATTCCAATTTTCATTCTCAGGCTGCTAACTACTTGAACATCAAGAGCCTGCTGGACCTCACATGCCAGACTGTCGCTGACATGATCAAAGGAAAGACTCCTGAGGAAATTGCAAAGATGTTCAACATCAACAATCATTTCACTACTGAGGAGGAAGAGCAGATTCTAAGGGAGAATCAATGGTCCTTTGAGTAAACATTACCTCTTTCGAACTCGAGACCTTCTATCGTCTCTTACGTCCCGTTTAGATCATCGCCTTTGTTAAATAATATTTATTTGTATGCAAACTGTTGTGACAAAACTCATGAAACAAACACACTCTTGTTCGAGATTAGTATCTAGTTTTTGTGGAATTTCTCTAACCTTTTTAATGGTTAATGTTGGGATATTATCGTCTTTACAAGTATTGTATTCTTTAAAATTTACAGGGAAGAATCCATAGATTTTC

mRNA sequence

ATGTCGTCATCGAAGAAGAAGATCGTCCTGAAGAGTTCCGATGGTGAAACCTTCGTCGTGGACAAAGCCGTGGCGGTCCAGTTTAAGATAATCGAGGACGTGATCGAGAAAGATGGCGCGGAGACCATGATCCCCTTGCCGAATGTCAAGGGTTCAATTCTTGACAAGGTAATTGAGTTCTGTAAGAAGCATGCTGCCGAGACTGAGGACAGTCTTGAAGCATGGGATGCTGAATTTGTCAAGCTTGATCATGATACTCTCTTTGATCTCATCTTGGCTGCTAACTACTTGAACATCAAGAGCCTGCTGGACCTCACATGCCAGACTGTCGCTGACATGATCAAAGGAAAGACTCCTGAGGAAATTGCAAAGATGTTCAACATCAACAATCATTTCACTACTGAGGAGGAAGAGCAGATTCTAAGGGAGAATCAATGGTCCTTTGAGTAA

Coding sequence (CDS)

ATGTCGTCATCGAAGAAGAAGATCGTCCTGAAGAGTTCCGATGGTGAAACCTTCGTCGTGGACAAAGCCGTGGCGGTCCAGTTTAAGATAATCGAGGACGTGATCGAGAAAGATGGCGCGGAGACCATGATCCCCTTGCCGAATGTCAAGGGTTCAATTCTTGACAAGGTAATTGAGTTCTGTAAGAAGCATGCTGCCGAGACTGAGGACAGTCTTGAAGCATGGGATGCTGAATTTGTCAAGCTTGATCATGATACTCTCTTTGATCTCATCTTGGCTGCTAACTACTTGAACATCAAGAGCCTGCTGGACCTCACATGCCAGACTGTCGCTGACATGATCAAAGGAAAGACTCCTGAGGAAATTGCAAAGATGTTCAACATCAACAATCATTTCACTACTGAGGAGGAAGAGCAGATTCTAAGGGAGAATCAATGGTCCTTTGAGTAA

Protein sequence

MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKKHAAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE

Homology

[Close]

BLAST of Spg014482 vs. NCBI nr
Match: POO00815.1 (S-phase kinase-associated protein [Trema orientale])

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 108/156 (69.23%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           MSSS KKIVLKSSDGE+F VD+AVA+Q + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MSSSSKKIVLKSSDGESFEVDEAVALQSQTIKHMIEDDCADNGIPLPNVTSKILAKVIEY 60

Query: 61  CKKHAAET-------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CKKH   T       +D L++WDAEFVK+D  TLFDLILAANYLNIK+LLDLTCQTVADM
Sbjct: 61  CKKHVDSTNPDERVADDDLKSWDAEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           IKGKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 121 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Spg014482 vs. NCBI nr
Match: PON53488.1 (S-phase kinase-associated protein [Parasponia andersonii])

HSP 1 Score: 202.6 bits (514), Expect = 2.4e-48
Identity = 107/156 (68.59%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           MSSS KKIVL+SSDGE+F VD+AVA+Q + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MSSSSKKIVLRSSDGESFEVDEAVALQSQTIKHMIEDDCADNGIPLPNVTSKILAKVIEY 60

Query: 61  CKKHAAET-------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CKKH   T       +D L++WDAEFVK+D  TLFDLILAANYLNIK+LLDLTCQTVADM
Sbjct: 61  CKKHVDSTNPDERVADDDLKSWDAEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           IKGKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 121 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Spg014482 vs. NCBI nr
Match: XP_022135870.1 (SKP1-like protein 1B [Momordica charantia])

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-48
Identity = 105/154 (68.18%), Postives = 124/154 (80.52%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           SS KKIVLKSSDGETF V++AVAV+ + I+ +IE D A+ +IPLPNV  +IL KVIE+CK
Sbjct: 2   SSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCK 61

Query: 63  KH-------AAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIK 122
           KH       +   +DSL+ WDAE+VK+D +TLFDLILAANYLNIK LLDLTCQTVADMIK
Sbjct: 62  KHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 121

Query: 123 GKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           GKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Spg014482 vs. NCBI nr
Match: XP_039059674.1 (SKP1-like protein 1A [Hibiscus syriacus] >KAE8724717.1 SKP1-like protein 1B [Hibiscus syriacus])

HSP 1 Score: 201.1 bits (510), Expect = 6.9e-48
Identity = 103/155 (66.45%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           M+S+ KKI+L+SSDGETF V++AVAV+ + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MASTSKKIMLRSSDGETFEVEEAVAVESQTIKHMIEDDCADNAIPLPNVTSKILSKVIEY 60

Query: 61  CKKHAA------ETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           C+KH         +ED + AWDA+FVK+D +TLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  CRKHVEAATKENNSEDEIRAWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           KGKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Spg014482 vs. NCBI nr
Match: NP_001292563.1 (SKP1-like protein 1A [Malus domestica] >ACB87913.1 SKP1-like protein 1 [Malus domestica])

HSP 1 Score: 200.7 bits (509), Expect = 9.0e-48
Identity = 108/156 (69.23%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           MSSS KKI LKSSDGE+F V++AVA++ + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MSSSSKKITLKSSDGESFEVEEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEY 60

Query: 61  CKKH--AAE-----TEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CK+H  AA+     +ED L+AWD EFVK+D  TLFDLILAANYLNIKSLLDLTCQTVADM
Sbjct: 61  CKRHVDAAKPDEKISEDDLKAWDQEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           IKGKTPEEI K FNINN FT EEEE++ RENQW+FE
Sbjct: 121 IKGKTPEEIRKTFNINNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Spg014482 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-46
Identity = 97/159 (61.01%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S KKIVLKSSDGE+F V++AVA++ + I  ++E D  +  +PLPNV   IL KVIE+CK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 64  H-------------AAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTV 123
           H             AA ++D L+AWDA+F+K+D  TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 124 ADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           ADMIKGKTPEEI   FNI N FT EEEE++ RENQW+FE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Spg014482 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-45
Identity = 98/170 (57.65%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           S+ +KI LKSSDGE F +D+AVA++ + I+ +IE D  +  IPLPNV   IL KVIE+CK
Sbjct: 2   STVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCK 61

Query: 63  KH--AAE---------------------TEDSLEAWDAEFVKLDHDTLFDLILAANYLNI 122
           +H  AAE                     +++ L+ WD+EF+K+D  TLFDLILAANYLNI
Sbjct: 62  RHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNI 121

Query: 123 KSLLDLTCQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           K LLDLTCQTVADMIKGKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 122 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Spg014482 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.8e-44
Identity = 100/167 (59.88%), Postives = 116/167 (69.46%), Query Frame = 0


Query: 5   KKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKKH 64
           KK I LKSSDGE F V++AVA++ + I  +IE D A+  IPLPNV   IL KVIE+C KH
Sbjct: 7   KKMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKH 66

Query: 65  ----------AAE------------TEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSL 124
                     AA+            + + L+ WDA+FVK+D  TLFDLILAANYLNIK L
Sbjct: 67  VHAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGL 126

Query: 125 LDLTCQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           LDLTCQTVADMIKGKTPEEI K FNI N FT EEEE+I RENQW+FE
Sbjct: 127 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of Spg014482 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.9e-42
Identity = 90/151 (59.60%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S K IVL SSDG++F V++AVA+Q + I  ++E D     IPL NV+  IL KVIE+CKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 64  HAAE-----TEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIKGKT 123
           H  +     +E+ L  WD +F+ L+  T+F+LILAANYLNIKSLLDLTCQTVADMIKGKT
Sbjct: 62  HHVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKT 121

Query: 124 PEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           PEEI   FNI N FT EEEE + +ENQW+FE
Sbjct: 122 PEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Spg014482 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-41
Identity = 91/163 (55.83%), Postives = 118/163 (72.39%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           M+ +KK I+LKSSDGE+F +++AVAV+ + I+ +IE D A+  IPLPNV G+IL KVIE+
Sbjct: 1   MAETKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEY 60

Query: 61  CKKH---AAET-----------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLT 120
           CKKH   AAE             D L+ WD+EFVK+D  TLFDLILAANYLNI  LLDLT
Sbjct: 61  CKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLT 120

Query: 121 CQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           C+ VAD ++GKTPE++   FNI N +T EEE ++  EN+W+FE
Sbjct: 121 CKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Spg014482 vs. ExPASy TrEMBL
Match: A0A2P5FSP2 (SKP1-like protein OS=Trema orientale OX=63057 GN=TorRG33x02_034460 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.2e-49
Identity = 108/156 (69.23%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           MSSS KKIVLKSSDGE+F VD+AVA+Q + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MSSSSKKIVLKSSDGESFEVDEAVALQSQTIKHMIEDDCADNGIPLPNVTSKILAKVIEY 60

Query: 61  CKKHAAET-------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CKKH   T       +D L++WDAEFVK+D  TLFDLILAANYLNIK+LLDLTCQTVADM
Sbjct: 61  CKKHVDSTNPDERVADDDLKSWDAEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           IKGKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 121 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Spg014482 vs. ExPASy TrEMBL
Match: A0A2P5BXH3 (SKP1-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_202080 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.2e-48
Identity = 107/156 (68.59%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           MSSS KKIVL+SSDGE+F VD+AVA+Q + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MSSSSKKIVLRSSDGESFEVDEAVALQSQTIKHMIEDDCADNGIPLPNVTSKILAKVIEY 60

Query: 61  CKKHAAET-------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CKKH   T       +D L++WDAEFVK+D  TLFDLILAANYLNIK+LLDLTCQTVADM
Sbjct: 61  CKKHVDSTNPDERVADDDLKSWDAEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           IKGKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 121 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Spg014482 vs. ExPASy TrEMBL
Match: A0A6J1C297 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 105/154 (68.18%), Postives = 124/154 (80.52%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           SS KKIVLKSSDGETF V++AVAV+ + I+ +IE D A+ +IPLPNV  +IL KVIE+CK
Sbjct: 2   SSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCK 61

Query: 63  KH-------AAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIK 122
           KH       +   +DSL+ WDAE+VK+D +TLFDLILAANYLNIK LLDLTCQTVADMIK
Sbjct: 62  KHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 121

Query: 123 GKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           GKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Spg014482 vs. ExPASy TrEMBL
Match: A0A7C8ZBF3 (SKP1-like protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 105/158 (66.46%), Postives = 124/158 (78.48%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           SS KK+ LKSSDGETF V++AVA++ + I+ +IE D A+  IPLPNV G IL KVIE+CK
Sbjct: 2   SSGKKVTLKSSDGETFEVEEAVALESQTIKHMIEDDCADNAIPLPNVTGKILSKVIEYCK 61

Query: 63  KHA-----------AETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVA 122
           KH            + ++D L+AWDAEFVK+D +TLFDLILAANYLNIKSLLDLTCQTVA
Sbjct: 62  KHVDAAAAKSSDERSSSDDELKAWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVA 121

Query: 123 DMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           DMIKGKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 122 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 159

[Close]

BLAST of Spg014482 vs. ExPASy TrEMBL
Match: A0A6A3C858 (SKP1-like protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009942pilonHSYRG00143 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.3e-48
Identity = 103/155 (66.45%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           M+S+ KKI+L+SSDGETF V++AVAV+ + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MASTSKKIMLRSSDGETFEVEEAVAVESQTIKHMIEDDCADNAIPLPNVTSKILSKVIEY 60

Query: 61  CKKHAA------ETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           C+KH         +ED + AWDA+FVK+D +TLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  CRKHVEAATKENNSEDEIRAWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           KGKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Spg014482 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-47
Identity = 97/159 (61.01%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S KKIVLKSSDGE+F V++AVA++ + I  ++E D  +  +PLPNV   IL KVIE+CK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 64  H-------------AAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTV 123
           H             AA ++D L+AWDA+F+K+D  TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 124 ADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           ADMIKGKTPEEI   FNI N FT EEEE++ RENQW+FE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Spg014482 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-46
Identity = 98/170 (57.65%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           S+ +KI LKSSDGE F +D+AVA++ + I+ +IE D  +  IPLPNV   IL KVIE+CK
Sbjct: 2   STVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCK 61

Query: 63  KH--AAE---------------------TEDSLEAWDAEFVKLDHDTLFDLILAANYLNI 122
           +H  AAE                     +++ L+ WD+EF+K+D  TLFDLILAANYLNI
Sbjct: 62  RHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNI 121

Query: 123 KSLLDLTCQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           K LLDLTCQTVADMIKGKTPEEI K FNI N FT EEEE++ RENQW+FE
Sbjct: 122 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Spg014482 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 171.8 bits (434), Expect = 4.2e-43
Identity = 90/151 (59.60%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S K IVL SSDG++F V++AVA+Q + I  ++E D     IPL NV+  IL KVIE+CKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 64  HAAE-----TEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIKGKT 123
           H  +     +E+ L  WD +F+ L+  T+F+LILAANYLNIKSLLDLTCQTVADMIKGKT
Sbjct: 62  HHVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKT 121

Query: 124 PEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           PEEI   FNI N FT EEEE + +ENQW+FE
Sbjct: 122 PEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Spg014482 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 171.0 bits (432), Expect = 7.1e-43
Identity = 91/163 (55.83%), Postives = 118/163 (72.39%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           M+ +KK I+LKSSDGE+F +++AVAV+ + I+ +IE D A+  IPLPNV G+IL KVIE+
Sbjct: 1   MAETKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEY 60

Query: 61  CKKH---AAET-----------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLT 120
           CKKH   AAE             D L+ WD+EFVK+D  TLFDLILAANYLNI  LLDLT
Sbjct: 61  CKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLT 120

Query: 121 CQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           C+ VAD ++GKTPE++   FNI N +T EEE ++  EN+W+FE
Sbjct: 121 CKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Spg014482 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 168.3 bits (425), Expect = 4.6e-42
Identity = 88/151 (58.28%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S K IVL SSDG++F V++AVA+Q + I  ++E D     IPL NV+  IL KVIE+CKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 64  HAAE-----TEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIKGKT 123
           +  +     +E+ L  WD +F+ L+  T+F+LILAANYLNIKSL DLTCQTVADMIKGKT
Sbjct: 62  YHVDEANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKT 121

Query: 124 PEEIAKMFNINNHFTTEEEEQILRENQWSFE 150
           PEEI   FNI N FT EEEE + +ENQW+FE
Sbjct: 122 PEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

The following BLAST results are available for this feature:

BLAST of Spg014482 vs. NCBI nr


Match Name	E-value	Identity	Description
POO00815.1	1.1e-48	69.23	S-phase kinase-associated protein [Trema orientale]	[more]
PON53488.1	2.4e-48	68.59	S-phase kinase-associated protein [Parasponia andersonii]	[more]
XP_022135870.1	4.1e-48	68.18	SKP1-like protein 1B [Momordica charantia]	[more]
XP_039059674.1	6.9e-48	66.45	SKP1-like protein 1A [Hibiscus syriacus] >KAE8724717.1 SKP1-like protein 1B [Hib...	[more]
NP_001292563.1	9.0e-48	69.23	SKP1-like protein 1A [Malus domestica] >ACB87913.1 SKP1-like protein 1 [Malus do...	[more]

BLAST of Spg014482 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	1.8e-46	61.01	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9FHW7	4.4e-45	57.65	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	4.8e-44	59.88	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
O49484	5.9e-42	59.60	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]
Q9LNT9	1.0e-41	55.83	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of Spg014482 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5FSP2	5.2e-49	69.23	SKP1-like protein OS=Trema orientale OX=63057 GN=TorRG33x02_034460 PE=3 SV=1	[more]
A0A2P5BXH3	1.2e-48	68.59	SKP1-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_202080 PE=3 SV=...	[more]
A0A6J1C297	2.0e-48	68.18	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1	[more]
A0A7C8ZBF3	2.0e-48	66.46	SKP1-like protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1	[more]
A0A6A3C858	3.3e-48	66.45	SKP1-like protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009942pilonHSYRG0...	[more]

BLAST of Spg014482 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	1.3e-47	61.01	S phase kinase-associated protein 1	[more]
AT5G42190.1	3.1e-46	57.65	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	4.2e-43	59.60	SKP1-like 11	[more]
AT1G20140.1	7.1e-43	55.83	SKP1-like 4	[more]
AT4G34470.1	4.6e-42	58.28	SKP1-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 5..99 e-value: 1.3E-42 score: 157.5
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..149 e-value: 1.2E-57 score: 192.2
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 3..149
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..65 e-value: 1.4E-21 score: 76.4
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..149 e-value: 2.2E-62 score: 211.9
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 7..66
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 100..146 e-value: 1.7E-24 score: 85.6
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 3..149
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 7..114 e-value: 3.48221E-49 score: 151.976
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 72..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014482.1	Spg014482.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity