Spg014481 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg014481
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionBromo domain-containing protein
Locationscaffold3: 29849007 .. 29852447 (+)
RNA-Seq ExpressionSpg014481
SyntenySpg014481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCTCAGCATTCGAATTCGAACGGTATTCTATTCTATTCTATTCTATTTCTCTCTTACGCTTCTCAGTTTCATTCATTCAATTCTGACATTAATCTGGTTTCAAGCTATGGCGATCGTGCTTATGGGAGTCAGCGGTTCTGGAAAATCGTAAGTCTCTTCTCTCTCCGATCTACGCCCGATTCTTCGTCTTCCTTTTAACACATCCATTCAAAACGGAGACTCTGTAAATAAACGATTGATCGATTCAACGGCTTTAGATGATGAAATTAAATTTAGAGTTGAAATGGAGAAATTAAAATATATTTAACCTGAGATGAATCTGTGTTACTGAATTCGATATTGAAGATCTCGAATTCCTTATTGTGGAATTTGCATTTCTGGCTTGATTCTGTTTTCTGTGATCGAAGGGAATTTGTTTTCCCCCTTCCGATGATTTGATGAGTTGTGTGTGTGGTGCAGTACTATTGGTGCGATGCTGGCCAACTCCATGGACTCCACTTTTCTTGATGCTGATGATTTTCACCCAATTTCTAACAAGGGTATGCCACAACCTCTTTCCCTTTAAGCATACTTGTATTTTCCTATATGTTATTTACCGTATCTTTGATTCCATAAGTTATTATCTATGGAAACAAACCCCAAAGTGGGTAATAATAATGGAAAAAGAGACCTATATAAGGTACTTAATCTATTTCATTCACCCCACCCCAACTGAAAATAACAATAATACTGATGCCAATTACCTTCTTCCTTTCTTTTCTTTTTTTTCCCTAAACACACTATTGCACAAATTATTATTTCCATTGTTAGTTTGATTGGTGTTGATTGCTGTTTGAAGTATAACAAAATTTTATGCAAACGTAGGCACATTTCATAAAAGATACAGTCTAATACTGCAAAAGCTGTTCTTTCGATTTCTTCTTCATTTAGATGGGCTTTAAGCGGCACACCTATCCATGTTTTTTCCTCTGATTTCGTTTCTAATTAGTAGCTTTTAGTGCGATTTTTGTTTTGTGCTTTGAATCTCTGGTCGCGTTATGTGGAATTTTAGGCCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGAAAATTAGGCTTGTTTTCTTTAAATTTCCTCACCATGGTTTTCATTTTTGTTAAAGACACACTTGAATTCCTAACAAAATTCTAAAAACAAAAACTAGTTTTTGAAAACTACTTTTTTTTTGTTTTAAAAAATTGGCTTGGTTTTTGAAAACATGGGAAGAAGGTAGGTGAAAAGCCAAAGAAACTTAAATGCTGGTTGGCCAAAAGCTTACTTATTTGCTCATAATTTCTTTCCTCTGTTATGTAAACAAACTCGTCATCTCTCTATTTATTATATGCTTCCTATGGTTGTAAACAAACTCGTCATCTATCAAATTTTAGTTTCGTTCCTTTCTTAAATTCAAGCTTTGGGTAGATGAGTAGCCACTGGTTGTACAGATCACTCATAAATATACGATTTTGGGTAGATTTGTGTTTGATTTGAGAAGTATACCAATAATGGGTGGAATGGTTGAATTATAATCTGACATATGTGACCAATCATATTTAACTACGTGTATTTTTTTTGGCTTCTGATTCAGGTTGAGCTGTGTAAGTTCCAGAGTTTGGTATGTGTGTCTTTGCTTGAGATATCAATTGACTAGCAGATACAGACAGATTAACAACAATTATTAGGTAAATTGATCTTTGGATGCTGTAAATTCTCTCTGGATGTGACAGATTACAATGTGAATATTGAACTTTTAGATCCATTGGATAACCATTTTGTGTTTAGAAACACTTCCAAACACTTCCTCCACCTATGATGTTCTTACTTTATTACCTGCGTGTAATTTTGAAAACTATTAGATAAACATGAGTTCCATCTCAAAACCATATGAAGTGGTTGAATTTAGATCTTCAAAGCTGCTTGTCTTAAGGCTTACTCTTATGCTTATGATGATCCCACTAGCATTGCAACTTGCACTGGTGGCAACTATTTGGTCACTTTTTGCCCTCGTCAAGGTTAGAAGCACTTTAAGCAAAAACACACTCTCTTCTCTCTGCTTTCTCTCTAGAATATGATACTTTTTCTTATAGGAGTTTAATGGGGTCTGTAATGGCTTTTACTAATGGACTTATATTGATGCCAAGTTGCCATCTTTCTCTCTCTCTCTTTCTCTTTATGATACTAGGGAATTAATGGGGTTTTGGCTGTTGGTGCTTTGTATTAAATGGGTAGTTTTGGTTCTTGTGGTAATGGTTGGACTATGAATGAGTTCAAAAAGTAATTAACTTGCCAAAAATTGCAGCCATTGCTAATATGGAAATGAGTGGATTTCTGTCATATGAGCTGTGTGATAGTATGAGTGGATTTCTGTAGTGTTCTTTTGGCCACATCTTTACAAGATGAAAAGCCTGCCAGCTGGGTTAGAAATGTCCAATGGCTGCTGTAGTTTTCACTAAAGAAAATATTTTCCTTAGAAAAAGGTAGTCCTACTCCTTGACACTTGCCTTTTTCAATATCTATTTAAAAGGTTAGAACTTGGTTTAAATTTTAAAATAGTTACCACATACATTAGGAAAGAGTTATACTTCTAAATTTGAATTGAAATGTTGAGTTAAGATTTCTACCTTGTCCCACTAGGTGGAGAATGGCTCAAATGGAGTCAAATCGGTTCATTTCCTGTGGCAGCCGAAAGAACAGACTAATGAAAACAGGCAAGCCCACTCTTTGCGGAAATTTTGAATGTGCTTCAAAGATCAATCAAGTTCAGTCAAAGAGTTCAATCTTTATTCCATCTTTTGCTGCTTTTTGCCATCATGGAACACTGTGGCAATTCAATCCTCTGTTATGAATGTGCACATTTCTTTTTGTTTTATTCGCTGCCTATTACTTTTTGTTCATTTTTGTGTTTGTGTTACAACATTTTAAGATATGCATTAGCTTTGTTTGTGGCCTCTTTTGTTTAACTGCACTTTGAGTTGTCGTTCATTGATAATTACTGGTAGTTTTGAGGGGGTTCTTTTCTTTGAAACTTTATTTATACATGTGCTAGTTTTGAATTCTAAATTTTGAACTTGTACTTGTAGTCGGAACTCAAATCATATGCTTCTCAAGTAGTTGATGGTACACTTGACATGAACGAGGATGAGATTTTTGTACAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGAGTAGGTGTTACTCCTTCTGAGCTATTTGGATCATCTTCTAATGTACGTGATCTTGAGCGTCGTCTTAATGAGTCTGAACAACGTCTTCAAGAATCTGAACAACAAAGAAAAGTCGAGGTACAAGCACTAAAAGATCAAATTGTCGAACTAGAAAATCGTTTTGAGGATAAATTTCAAACAATGATGGCAGAGATGCGTAAACAATTTGCTAATAATTGA

mRNA sequence

ATGGACTCTCAGCATTCGAATTCGAACGGTATTCTATTCTATTCTATTCTATTTCTCTCTTACGCTTCTCAGTTTCATTCATTCAATTCTGACATTAATCTGGTTTCAAGCTATGGCGATCGTGCTTATGGGAGTCAGCGTACTATTGGTGCGATGCTGGCCAACTCCATGGACTCCACTTTTCTTGATGCTGATGATTTTCACCCAATTTCTAACAAGGATGAAAAGCCTGCCAGCTGGGTTAGAAATGTCCAATGGCTGCTGTGGAGAATGGCTCAAATGGAGTCAAATCGGTTCATTTCCTGTGGCAGCCGAAAGAACAGACTAATGAAAACAGGCAAGCCCACTCTTTGCGGAAATTTTGAATGTGCTTCAAAGATCAATCAATCGGAACTCAAATCATATGCTTCTCAAGTAGTTGATGGTACACTTGACATGAACGAGGATGAGATTTTTGTACAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGAGTAGGTGTTACTCCTTCTGAGCTATTTGGATCATCTTCTAATGTACGTGATCTTGAGCGTCGTCTTAATGAGTCTGAACAACGTCTTCAAGAATCTGAACAACAAAGAAAAGTCGAGGTACAAGCACTAAAAGATCAAATTGTCGAACTAGAAAATCGTTTTGAGGATAAATTTCAAACAATGATGGCAGAGATGCGTAAACAATTTGCTAATAATTGA

Coding sequence (CDS)

ATGGACTCTCAGCATTCGAATTCGAACGGTATTCTATTCTATTCTATTCTATTTCTCTCTTACGCTTCTCAGTTTCATTCATTCAATTCTGACATTAATCTGGTTTCAAGCTATGGCGATCGTGCTTATGGGAGTCAGCGTACTATTGGTGCGATGCTGGCCAACTCCATGGACTCCACTTTTCTTGATGCTGATGATTTTCACCCAATTTCTAACAAGGATGAAAAGCCTGCCAGCTGGGTTAGAAATGTCCAATGGCTGCTGTGGAGAATGGCTCAAATGGAGTCAAATCGGTTCATTTCCTGTGGCAGCCGAAAGAACAGACTAATGAAAACAGGCAAGCCCACTCTTTGCGGAAATTTTGAATGTGCTTCAAAGATCAATCAATCGGAACTCAAATCATATGCTTCTCAAGTAGTTGATGGTACACTTGACATGAACGAGGATGAGATTTTTGTACAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGAGTAGGTGTTACTCCTTCTGAGCTATTTGGATCATCTTCTAATGTACGTGATCTTGAGCGTCGTCTTAATGAGTCTGAACAACGTCTTCAAGAATCTGAACAACAAAGAAAAGTCGAGGTACAAGCACTAAAAGATCAAATTGTCGAACTAGAAAATCGTTTTGAGGATAAATTTCAAACAATGATGGCAGAGATGCGTAAACAATTTGCTAATAATTGA

Protein sequence

MDSQHSNSNGILFYSILFLSYASQFHSFNSDINLVSSYGDRAYGSQRTIGAMLANSMDSTFLDADDFHPISNKDEKPASWVRNVQWLLWRMAQMESNRFISCGSRKNRLMKTGKPTLCGNFECASKINQSELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVRDLERRLNESEQRLQESEQQRKVEVQALKDQIVELENRFEDKFQTMMAEMRKQFANN
Homology
[Close]
BLAST of Spg014481 vs. NCBI nr
Match: XP_038904040.1 (uncharacterized protein LOC120090445 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-36
Identity = 89/118 (75.42%), Postives = 99/118 (83.90%), Query Frame = 0 

Query: 130 SELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVRDLERR 189
           S+LKSYASQV+DGTLDMNEDE FV+VFGPEKHG V GYGVGVTPSELFGSSS +RD ERR
Sbjct: 65  SKLKSYASQVIDGTLDMNEDETFVRVFGPEKHGHVHGYGVGVTPSELFGSSSTIRDHERR 124

Query: 190 LNESEQRLQESEQQRK-------VEVQALKDQIVELENRFEDKFQTMMAEMRKQFANN 241
           LNESEQRLQE EQQRK       +EV+ LK QI ELENRFED+FQ MMAEM K+F ++
Sbjct: 125 LNESEQRLQEFEQQRKEFEQQRELEVEVLKRQISELENRFEDRFQKMMAEMCKKFVSS 182

[Close]
BLAST of Spg014481 vs. NCBI nr
Match: XP_008457059.1 (PREDICTED: uncharacterized protein LOC103496828 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-19
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 132 LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVRDLERRLN 191
           +KSYASQV+DGTLDMN+D+IFVQ+FGPEKH  VRGYGVGV  SELFGSSS V DLERRLN
Sbjct: 122 VKSYASQVIDGTLDMNDDDIFVQIFGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLN 181

Query: 192 ESEQ 196
           ES++
Sbjct: 182 ESKK 185

[Close]
BLAST of Spg014481 vs. NCBI nr
Match: KAA0049895.1 (uncharacterized protein E6C27_scaffold13G00470 [Cucumis melo var. makuwa] >TYK07633.1 uncharacterized protein E5676_scaffold105G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-18
Identity = 55/71 (77.46%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 131 ELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVRDLERRL 190
           ELK  ASQV++G LDMNED+IFVQVFGPEKHG VRGYGVGVTP ELF SSS V DLE  L
Sbjct: 45  ELKLNASQVINGILDMNEDDIFVQVFGPEKHGCVRGYGVGVTPYELFRSSSKVHDLEHGL 104

Query: 191 NESEQRLQESE 202
           NE E RL ESE
Sbjct: 105 NEFELRLHESE 115

[Close]
BLAST of Spg014481 vs. NCBI nr
Match: KAA0056079.1 (bromodomain-containing factor 1-like isoform X2 [Cucumis melo var. makuwa] >TYK01531.1 bromodomain-containing factor 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-18
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 132 LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVRDLERRLN 191
           +KSYASQV+DGTLDMN+D+IFVQ+ GPEKH  VRGYGVGV  SELFGSSS V DLERRLN
Sbjct: 24  VKSYASQVIDGTLDMNDDDIFVQICGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLN 83

Query: 192 ESEQ 196
           ES++
Sbjct: 84  ESKK 87

[Close]
BLAST of Spg014481 vs. NCBI nr
Match: KAF3956246.1 (hypothetical protein CMV_018610 [Castanea mollissima])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-15
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 0 

Query: 132 LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSS-NVRDLERRL 191
           L++  +QV +G L +++D++FV+VFGPE+HGRVRGYG GVTP+ L+GSSS  + DLE+RL
Sbjct: 531 LRNLTTQVNEGALQISQDQMFVEVFGPERHGRVRGYGAGVTPTMLWGSSSCRMYDLEKRL 590

Query: 192 NESEQRLQESEQQR-------KVEVQALKD-------QIVELENRFEDKFQTMMAEMRKQ 240
            ESEQ+  ESE +R       K EV+ LK        Q+VE    FE++  + MAE R  
Sbjct: 591 QESEQKRLESEHKRIEADAELKGEVKHLKSMLEQQAIQMVEQRRHFEEQQASQMAEQRAH 650

[Close]
BLAST of Spg014481 vs. ExPASy TrEMBL
Match: A0A1S3C480 (uncharacterized protein LOC103496828 OS=Cucumis melo OX=3656 GN=LOC103496828 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 132 LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVRDLERRLN 191
           +KSYASQV+DGTLDMN+D+IFVQ+FGPEKH  VRGYGVGV  SELFGSSS V DLERRLN
Sbjct: 122 VKSYASQVIDGTLDMNDDDIFVQIFGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLN 181

Query: 192 ESEQ 196
           ES++
Sbjct: 182 ESKK 185

[Close]
BLAST of Spg014481 vs. ExPASy TrEMBL
Match: A0A5A7U8E9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00340 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-19
Identity = 55/71 (77.46%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 131 ELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVRDLERRL 190
           ELK  ASQV++G LDMNED+IFVQVFGPEKHG VRGYGVGVTP ELF SSS V DLE  L
Sbjct: 45  ELKLNASQVINGILDMNEDDIFVQVFGPEKHGCVRGYGVGVTPYELFRSSSKVHDLEHGL 104

Query: 191 NESEQRLQESE 202
           NE E RL ESE
Sbjct: 105 NEFELRLHESE 115

[Close]
BLAST of Spg014481 vs. ExPASy TrEMBL
Match: A0A5D3BP34 (Bromodomain-containing factor 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00930 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.0e-19
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 132 LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVRDLERRLN 191
           +KSYASQV+DGTLDMN+D+IFVQ+ GPEKH  VRGYGVGV  SELFGSSS V DLERRLN
Sbjct: 24  VKSYASQVIDGTLDMNDDDIFVQICGPEKHRHVRGYGVGVIHSELFGSSSKVHDLERRLN 83

Query: 192 ESEQ 196
           ES++
Sbjct: 84  ESKK 87

[Close]
BLAST of Spg014481 vs. ExPASy TrEMBL
Match: A0A2N9H1H2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33597 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-16
Identity = 51/113 (45.13%), Postives = 82/113 (72.57%), Query Frame = 0 

Query: 132 LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSN-VRDLERRL 191
           L+S+ +QV +G+L M+ED++FV+VFGPE HGRVRGYG GVT ++L+GSSS+ + DLE+RL
Sbjct: 3   LRSFTTQVNEGSLQMSEDQMFVEVFGPEHHGRVRGYGAGVTATKLWGSSSSKMNDLEKRL 62

Query: 192 NESEQRLQESEQQRKVEVQALKDQIVELENRFED----------KFQTMMAEM 234
           +ESEQ   E+      +V+ L++Q+++L++  E+          + +T+MA+M
Sbjct: 63  HESEQMRLEANANANAKVELLEEQVIQLKDLLEEQSTQMEQQAIRVETLMAQM 115

[Close]
BLAST of Spg014481 vs. ExPASy TrEMBL
Match: A0A2N9HCP8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40018 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.2e-16
Identity = 48/99 (48.48%), Postives = 76/99 (76.77%), Query Frame = 0 

Query: 132  LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSN-VRDLERRL 191
            L+S  +QV +G+L M+ED++FV+VFGPE+HGRVRGYG GVT ++L+GSSS+ + DLE+RL
Sbjct: 982  LRSLTTQVNEGSLQMSEDQMFVEVFGPERHGRVRGYGAGVTATKLWGSSSSKINDLEKRL 1041

Query: 192  NESEQRLQESEQQRKVEVQALKDQIVELENRFEDKFQTM 230
             ESEQ   E+  +   +V+ L++Q+++L++  E++   M
Sbjct: 1042 QESEQMRLEANAKANAKVELLEEQVIQLKDLLEERSTQM 1080

The following BLAST results are available for this feature:
BLAST of Spg014481 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904040.11.2e-3675.42uncharacterized protein LOC120090445 [Benincasa hispida][more]
XP_008457059.12.2e-1979.69PREDICTED: uncharacterized protein LOC103496828 [Cucumis melo][more]
KAA0049895.11.1e-1877.46uncharacterized protein E6C27_scaffold13G00470 [Cucumis melo var. makuwa] >TYK07... [more]
KAA0056079.11.9e-1878.13bromodomain-containing factor 1-like isoform X2 [Cucumis melo var. makuwa] >TYK0... [more]
KAF3956246.11.5e-1547.15hypothetical protein CMV_018610 [Castanea mollissima][more]
BLAST of Spg014481 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg014481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C4801.1e-1979.69uncharacterized protein LOC103496828 OS=Cucumis melo OX=3656 GN=LOC103496828 PE=... [more]
A0A5A7U8E95.3e-1977.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BP349.0e-1978.13Bromodomain-containing factor 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A2N9H1H22.4e-1645.13Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33597 PE=4 SV=1[more]
A0A2N9HCP83.2e-1648.48Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40018 PE=4 SV=1[more]
BLAST of Spg014481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 183..228

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg014481.1Spg014481.1mRNA