Spg014456 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg014456
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm8
Locationscaffold3: 33668771 .. 33679536 (+)
RNA-Seq ExpressionSpg014456
SyntenySpg014456
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAACCAGACCAAAACAAATGCCTCTCGTTTTTCTTCTTCACGCCATCGCCGATTCGCCAGACCAGACGCCATCGCCACCGATCAAAATGCAGCTCCCACTCCCAGCCCAGGTTCGTTCTACTCTCTCTTTTATTTCTTTCTCCTTTATTCATTTTTTTTTAAACTCTAGTTTTTTAGTTTCAAAACATAGCTCAAAACACATTTTTTATGGCACACTTTGAATTTATAATTTGTTAATGGCTCTACTATACTATGATTCAAAACCTTTCTCCCCGTCTTATTAATGGCTCTACACTGTACTATGTTGTACTTTGCAATTTTGTACAACATTGTCAATTATCAGTTAATCACTATGGAGTCGGACACAGAAGAAGAATCACCCATGTCTAATTTCATTGTGAGTTAAAATTGTCTAAGTTATATCTAACTGCTGCAAATAAAGTTCCAGTTTCTGCCATAAAACATTAATCAAATTAGAAAATGAAAATGAAAAATGAAAGTGCCTGCTATGTTTGTTTATCCATTCCCATAAATGAAAATGAAAAGACATGAAATGAATGCTTCAATACTTTCTTGTTATATATGTTTAGTTCACCTTAAGAATGTATTGTAATGTTAAACTAAGTTATTGATTTTTAATTTTTTTGTATTGTGCATATACTTGAGACTGAAAGATGTTTGTGTATTTTTATCTATGGGTTGTTTGTTCGTGTATTTTTATTTATGAGATTGTTTGTGTTAGTTGGTTGTTATTTATTTTAGTTTAATTTATTTTATATATGGACAACAGTAGTGGAAATGCAAGTGGATGTAATGACGAAACTCCTGCTCCCGATATTAGCCAGACTCTTACTCCTAGTCTTAAACCACCATTACTTTTACCTCTAAAGTATTTTAGTAAACAAACTTCTTCTGTATGGAATCGTTTCACAAAAATTGAAGTGGGTCAACAAGAACATATGTTTTCAACGACAAGTTTTTAGTGACGCAACAAAAATAAGTCACTAAAGGTGACTTTCAGCGGCATCACAAATCAGATGTTTCAATTGCATATTTTCAGTGACATAATAAAATTAGATGTCGCTAATAGTTTCAGAGATGCATAAACTCACGTCACAAAAAGTTTTATTTTTTAGCAACATGTTTATCACGTTGATAAAGGATGTGTTTGGAGCCACTAAATGTTAGAACATAAAAATAAGAGTGCGTTTGGTTGGTGATTTGAAAACAAGTGAATCAATGAAAACAGAGTTGTATTTCATGTTTTCAGATATGTGTTTGGTAGCCTATTCAAAAATTGGATCTCAATTTAAACAATTGTTCAAAATGTGTTTGATAATATATTTATAAATCATAAACTATTTGTAGTTATCAACTAAATATATTAGGTTGAATATAAACTATTAATAATTAATTTATAAACATGTTATATGACATAAATTTTGTATAATTATTATTTTACAATATCATATAATTTATAATACATTATATTATACAAATTTTAATTTCATAAAAATGAATTGAATTTAAACATGAAATATTATACTTATCAAAGTTTTTATCTTATTTAATTTAATTATGCATTTAAAAATTTCAAATTTAAAATTTGGATACACTGGAAAAAAAAAAAAATTGTTTTTTGAATTTTCACTATTTGGATCACAAACTCCAAAAACAGTTTTCAAAATCACATTTAACAAAAGTGCACTTGATTCAATAAATCTAAATTGTCTAATGTCTACCAAATGGGTCCTTCAGTTTTGCGTTTTCCCCCTTCCCTCTTCTATTTTCAGCCACCGCCCATTTTCCCTCTCTCCCTCGATTTTCACTGTCTCCCGAAAGCTCAGGTAGCCTACGTCGAAGCTCGCCGTCGAAGATCGCGTCTCAGGTTGCGTACGTCGCCGCCGAAGCTCGCATCTCAGGTCGCCTACGTCGTCGCCGAAGCTCAGGTCACCGCCCCTTTTCCCTCTCTCCCTCGAGCAAATTGACCAGAAGCTTGCCGCCGCCCATCCACGTTGCTCAGCCGTCGTCTTCGTCAGTCACTTCCTCGCTGGTAAGATTTAAGCTATTCTCTTGCTTAATTTATCTCTTTTCTTTTTCCCTTGTTGTTCTTTCTCGAGAAAAATCTCTCTCTCTCTCTCTCTCTTCTGTCCTTCATACGCTCCTCCTCCTCTCTCTCTCTTTCAGGCTTTAATTTGAATTTTCTCGGCTCCCAAACGCGTGCTTCTTCGTATCTCTCCGTGTATTATCTCTTTTTTGTGCTGTTTATTGTCGTATCACAGCCAAAGTTGCCTTATACCCAGATTTCTTTATTGGGTTTCTGATTATCCTTTGAGGTATTTGATGTTTTGTTTGTTCTTCTTTGATTTCTTCTTTTTACATGGGGTTCGAGTTGTTATGATTTGGGGTTCTTGTTATTTGGGGTGTTTTGCTTTATGGGTTGGTTTTATTATTGTCTGGAGTTGGTTGAGGCCCCTTCGTTTTTGGATGTCCTAATCTGCATTCCGTTTGTTGGTTGTCTCATTGTGACTCTGGATATTTGCTTGTTCTATGGGCCTCAAATTTTTTGGTGGAGTTGTTCTTTTGAGTTCTGGATTTAGAAAGTTTGTTGGTATCAGAAATACAAAGTTGGATGATATGAGTTTCTACAAGGTTTAGTTTTCCTGTAATGGTTCTTGAATTGGTTCCATTGGAGTTTTAAATAGTTAGTGTGAAATTTTGAATGATGAATAAAATACAAGACAAACAAAGAAACAAAGAAGAAGAAGTATTTGTGTTTATGAAGTTGAAATTCAGATAGAGTTGGGAGGGAAAGTGGAAAACTTAATTTTTAGGCCATTTGCAGCAACCATGTTTACGAAAAACTGCCTTTTCTAATAAACTTTACCCTGTTTTTTAACTACTTTTGAGACACAAAAAAGTGAAAAATCAGTTTCTCTTTCTAGTGGAATCCTATGGAATTTAAGAGAGATAAGAATGTTGAGTTTAAAATTTGAGGTTGATGATGATGGTTAGTTTTCAAAAGCTTTTTTGGGTCATTTTCAGTGTATTTCTAACATCTCTCTCACAAGTATTCACACAACAAAATGGTTTTCATTGTCTTGTGTGTCTTATATTCAACAGAAAGTTCTAAAAAAGTAGATTTGCTAATTAAATCTACTCAAGAATTTGAAAATCAGCTTAAACATTACAATTAAAAGTTAAGAATCAAAAGATGAAATCAAATTTTGATTCCTTGTTTGTTGGTTGATGTTGGTTACGCTTTCATTCCTTCTGTGGGATTTTATAATGTTTTGGTGATTTTGTGATATCCAACTTAGAGTTCTGTAAATATACTTTTTTTTTTTTTAGAATTCTAGCCTAGGGACTCTTAATAATTTACAAAGTTCGGCTCTTTGTTCTATTATGTAAATGAGAAATATCTTGATTTTTATTTATGGGTTTTTTGCTTTAGATGGGAGAATGGTTTTATGTTGTGTTTGCTTCTTGGGAAAATGTGTGTGTGAATCCCAGAACTGAAAATGATTAGACCTTGGATTTTTGGGTGTTGTGGTTTTAGTTTTTGTATGTTTATCTGGTGTTTAGATGGGAGAATGGTTTGCTTTTTCTATTTGGTTTTAGGGAATATGAGCATGAATCCCAAGGATGATTAATTGTTTTGTTTCAATAAATTTGCATCAACAATCAAATTTCTTGTTGGAAGAATGAGTTTTCCGGTTGGAAATCTAAGAAACTTATGCGCACAATGGATCAGTCACATACCCATAAGTGGATTCCAAGTGTTTTTTTTGTGCTCAAAATTGCATCAGTAATCTCATTGTTTCTTGGAAGGATGAATTTTCCTTGAAAAGTTGGGCATAGAAATCTAAGAAATTGCATAATTAATGAAATGGTGAAAAAAAACCCAAGTGAATTCAAGTGTTTTTTTTCTTCTCAAAGTTACATCAATAAATAAATTCTCTCTTGGAAAGATGAATTATCATGCCTAGAATTATAATAAAGTTTTTGAATACAATGGATTTATTTTTGTTGAGTTGTTCCATTTACAAAGTTGAGTTTGATTGTTTGAGTTGTTAAGTTATTGTGTTTAGCGGGGGGCAAATACCTTGTTGCACTTAGTTCTTTTAACTAGTTTGCTTGTTTTCATTGATATGTTTATTTGTAATGGTGTTGTTAGGTTGAGTTGTTTCATTGCAAATCCATGATATTTGTGATAAGTGTTTAGGGAGTTTATTTTTGTTGAGTTGTTCCATTTACAAAGTTGAGTTTGGTTGTTTGAGTTGTTGAGTTATTGTGTTTAGGGGGGGTCAATACCTTATTGCATTTAGTTCTTTTAAGTAGTTTAATGCTTGATCATGCAATCAAATTTGAGAAAGCTTTTAAAATTTTGGAGGAAGAGAAAACAGAGTCAGATTTTGTTGATTATTTTGAGGAAGATGACCAATGTAAATAAAAGATTGGGGCCACCAACTGCATTTGATTGGGCAAACGTGAAGGTGTTTGTTAAGTCCTTGAAGAAGTTTTATGATGTCACTAATAAAATAAGTGGTTCTCTGTATGTGACTTCTAAGGTTGGTTTTCATGAACTTTATGGTATTCAATTTAGTTTAATGAAGTGGAGCAAAAATCCTAACTCTGTCTTAGCAATATGGCTTCCAATATGAAGAAAAAGTTTCGACAGATATTGGGGTTCGGTTGAAAAGATTAATAAGTTGATATTTATTGTTGTGGTGTTTGATCCTCGTTTCAAGTTGGATTATGTGTCGTTTTGCTTTTCTACTGTTTATGACGCTGGTGTGGTTAAAGAGATGGTTGAGAATGTCAAGATATATTTATATCGTCTATATGAATTTTACAAATCTCATGACAAAGCCAATCGAGGTAGTAGTAGTACTACTAGTGTGGTGGTGGTTCTCAACAATCAAGCATTGTCACTTGGTCAATTCAAATAAAAATAAATAAAAGAAAGAGGAAACCTAAACCCTTTCATCTTCCTCTCACTCTCACATGCTCTACCTTCTTTTTCACGCTTGCTCATCCTCCCCTTTCTGCAGCTTAGTGTCGCCGCCGTCGTCATCGCTTCTTTCCGGTTCAGTGCCACGTCCGTCTTTCTTCCATTCGTGCAGCCGCAGCCTCCCTCCTAGCGGATTGCACTGACTTCATTTTCTTGTTGTTGTTAAAGGTATTTTCCCAATCTCCATCTATGTCTCTCTCCCTTGAAAAACTCAAATTAGAACTTGTCTAATGAAATAATGGTAGAGTTCTTTTGATTATTTTTCTTGCTTTTGTCTATCAATTGAGGCCTTGGTCATCTGTATATCTCTTTGGTCTCGGCTGAAACTTGCCTTGATTCTAGTCTCCCAAATCTTCCAAAGCACCACTCATGGTAAATTTTTCAGCATCTCCCTTCTCGTTATATATCAAGAATCAGTCAAAGTAATGTATTGTTTTTTCCAAATTTTCTTTTAATGCCTAGCTTGTAGGAGTTGATTTGATTGTCAATCAACCTCAATCATATTTATATTTGTAGATTATAGTTGGAAGAAGACAATGAGTCTTTTAAGAAAATTAGAATTCTCTCCATCTGATTAACCAATCGCTAATGTTACTTTGAATTTACTGGAAATAAGAGTCGTCTATGCTTTCTTCTTCTGCGACTGATTTGTGTCTGTAATGGTTTTTCATTTTCCTTTATCGTCTTGGGCAGAATCTTGCGCAGCTAACAATATAGTATAGCTCGTAGCTTATTGTAAGGGTCTTCAATATGGCAAGTGGACCTGGACTTGAATCTCTGGTTGATCGTAAGTAATCTCATTAGTAATCCCTCAAATTTCTCGTTTTTATATGTGTATTTAATTCATTCAGTGTGAAAATGCAGTAATTAATATTGAACTTCTGAGGCAGGCAAGTTGAATAGATTGTCCTTTTTTTTGGTTATGAATTATGAATTGTTTTGGGCGATACAGAAGCGCCTCTTTGTATTATTTTCTTCTTGATTAAATGAAATCTAGAATATCATACATTTAAATAGAGAACAATTTGAAAGGTAAATTGGAGGGGGAAACCACCTTGGATTGGCCCAGTGGTCAAAAAAGGTTTTGTAAATAATAAAGAATTTAGAGGAAATTGGTTCAAGGCTTCAAGCCATGGTGACCACCTTCCTAGAATTTAATATCGTATGGATTACCTTGGCAATCAAATGTTGGTTAGATAATTGTCCCGTGAAAATAATTCAAAAAAGGGAAAAATACACTTTTGGTTTCTGAGGTTTGAACTTGATGTCTATTTGGTCCCTGAAGTTTCAAAAGTGACACTTTAGTCCCCAAGGTTTGTAAAACAGTTCTAAATGGTCCTTAAGTTAATTTGATCGTTAGTTGACTAACGGTAAAATGATGTGACATGTTGAGGTGTTAAATTTTAATTGAGGTGGCCACTTTAATAATTTTATATCATTTTCCTTTTTCTCCTCTTTCCCTTTCTCTCTCTTCCCTTATCTCCTTTCTCCCTTCCTTTCTCGTTCCTCCCTTTCTTATGCTCTTTCACACAATTAAAGGGTAGAGTGTATTTTTGTTAGCATCAAAACCTCACATTCCATCCATTGTTGCAGTGCAAAATTTATGTTTTTAGGGTTAATTTTCCCCAATTACTCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAGAAGCTGAAATCCATTTCACCTCCCCCCTTCACTTTCTCAAAATTTGTTCTCAGGGTTACCATTTCTCATCAATCACTCACTTTAAATATATATCTTTATTTCTCACTCTTGTTTTTTCTTTTGTTCCCATTAATTTCTTGATTTTCAATCCCCTTAGTTGATGCTTGCTTTTGCATCATAGAGAATTTTACTGAAATGAAAAAGATAAGGAAAACAAATCTTTCATTAGAACCATTGTTTTTTTTTTTTTTTTTTGAGGAAAAACAACTCTTTCAACATTCTCATATGGGTTTTGTTGCTCTTTTTTTCTTTCAGACTTTATTCTCTTGTGTCTTCTTAACTTTTCTTCTGAAAAGATGGACTTCTTTTCGTAGCAAGCTTCGTCTATTGTTGAGGAGGAAAAAGATGTTTTGGCGTTGACGTGTGTGGCAGCAGAGATGAACATGGAGAAGGCTATTGGAGTGGCAAATGGACAGTATGTGAGAGTACTAGTTAGGGATCTGTTGGGAATAGTAGTAGTATGGTAGTAAGGGTACAATAGTAAATAGTTATGGAGCCTTAGTTGTGCCTTGGTTATAAATAAGGGAATTTGGGAGCCTTAGAGGTGTGGAGAATTTTGGTAATGTCTCATAGTGAGACTTTGGGAGAGTGTTAGCCCTCTCAAAAGGCTATCGTTATATTGTAACTTCGTTTCGATATTGCAATATAATATATTAGTGTTTGGTGTCTTTTTTTTAGTTTGGATACCTAACACATAGTTGGTGGTGGTCAATGAATGGTGCCCATTGAAGAAGATGAAGAAGAGAGGGAAATGGAAGAAGGGAGTGGAGAAAGAAGATAAAGGGAAGATAGAGAAAGGGAAAGAGGGGGAAAAAGAAAATGAAATGTAATTTAAAAATAATAATATAAAATTATTAAATGGCCACCTCAATTAAAATTTGCCACCTCAACATGCCACGTCATTTTTCCGTTAGTCAACTAACGGTCAAATTAACTCAGGGACCATTTAGAACTATTTTTCAAACCTTAGTCACTTTTGAAACTTCAGGGACCAAAAACCAAAAGTGTATTTTTCCCTTCAAAAAAATGTGAATTGGAGGGGGGGGGGGGGGTTGTTAGAACAATGATATGTATACAATATCAGCCTAGTAGAGATCATGCAAAAATATACTGAAGAAAACAAGGTTAAATGTGAATGGACTGAGTAAAACTTGTTTATGATCTCTTTTAACTGCCCTGGAGTTGAAGCATGACTTCGCTTCTTAAACTTGCAATGCTACGATAGTCTCCTACTTGCAACCTTCTTCTTTTAAATCTTTTAAAGTTCTGTAAATGTAATTGTTTTTGAGAAATTGTTGTATTTAAAGTTCACGTTGAATTCAATTTTAGTTGACTTACTTTTCCTTTATTGTACTGTTCTTACTCTTCTCACCTGCTTGCACTTAAATCTTCCTTTTAATTTTTTCTAGAAACAATATCAGTAATCACGAATGACGGCCGCAATATCGTGGTATGTTTAGAAGTATCATCCAGTTGACTGGTATTTTGTCCACCCAATTTGTGTTTATATTAACGATACTTTATTCAGGGAGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTTGATGAATCTCATGAACGCGTTTACTCAACCAAGGTTTGTACATTCACCACGTTTATTTCCATCTATTTTGTCAATGTGTTTGAACTTGCTGTTGGAACAATTTCTCTGGCATTTGCTATTCTGAATTGAATGTTTAATCTGCTTCTCCTTTTCGGGAATTGATATTTTCTTACTCCTTGCAAACTTGTTTAATAGTATAGCAGAATAAGAGCTTTGATCCTTCTTTTTCTACTCACTAGTTCTTAGCAAACCTTATTACACCCGAGCTGAATCATTTCTAGAATTTCGATTGACCACATTTTGAAGTATACATGAAAATTAAAATTTAAATTCCATGAATGTAGTCTGATCTAGAGTAAATTATTTTCACCACAAGGAAAGCATATTTTTCAACAGGTACCAAAAAGGACCTCATTAGCTAAACTCTCCTAAAAAAGCATGCCCTAGCTTGCTATCTCAATTGTATGCAATGGCGAGTATATACATCTAGTTTTCAATTTTGATTTTATATTCATTTTCAATTATTCACCATATAGGCCTTTGTTTTGAGAAACTAATGGCATGTTGTGGTTGTTTTTACCCCCAATGACCTTGGGGTCGCCTATCGTTGTTTGCTTATGTAGGCCCCGTTTCATAACCATTTGGTTTTTGGTTTTTGAAAATTATGCTTGTCTTCCCTTAATTTTCCTACCATGGTTTTCATCTTTGTCAAGGACACATTTGAATTCCTAGCCAAATTCCAAAAACAAAAACAAGTTTTTGAAAACTATTTTTTTTAGTTTTCAAATTTTGGCTTGGTTTTTGAAAGCATGGAAAGAATGTATTAGGAAAACAAAGAAATTTGTAGGTGAAAGTAGTGTTTATAGGCTTAATTTTCAAAAACCAAATGGTTATTAAACGGGGTCGTAAATTTTTAGATTAACATTCGGATGATGCTCATATTAAATTGTTATTTAAAATATGGGTTTTGGAAAATGCACAAGAAGATACTGATAAAACGAAGTTTGATTTTTACATTTTCATATCACATATCTGTCTTTGTAACTACTATATTTATATAGGTTTTTTTTCTTCTTTTCTTTTCCTTCTCTCTCTCAAGTTCCGTTGTCCAAATAAAAACTACTATCATTTTCATATGGATTTTAAATTTGCACTCGACATAAATGCTTATACTCATTAAAATGTGAACAGATAAATTTTCATGTGATTTGAATCGCTTGAGTTTCGAATCTCACGATTTCTGACTTGATGGCTTTCAAGGGATTTAAGATTATGCATTTGCCCTTTGAATCCCATTTTTGTAACTCGATTCTACTCTTGATCTGCAGGAAGGAGTGCAGCAACTTGTTTTGGGTCTATATATAATCAGAGGCGACAATATGTAATTACTCTTTTAGTTTACTCCATATATGCCTATGTCTTTGTATGCACATACTACCTAACTGTTAGGTACCCTAACTATTATCCTGCCAAACAACAAGAAGAGAGACACAAACCAGAGATATGGAATCCCAAAACACTGTTCTATTGAGAGTTCTTCAATAAGTGGGGAATGAGCTGATTATCTATTGATATAAGGCAAATACAAGGGAAATAGTAAACCAAACACACAAACATCCACCAGCTATTCGAGAGAGTTGGGATCTCTCCCCACAGACCAATTCTAGTCCAAAAAACAGTCTGCTCTCTCAGCCTCCCACATCCCCTACAAAGCATTCCCTCACTCCCACGCCCGTACAAAAACCCACGTAGCTGATGGACCCCACACGCTAACGGCTTTACATTCTTTTCTTTCCTTTCCTACTATAAGTATATTTGATAGGTGGCCTCACACTAACACACACACCAACCTCAACTTAACTCAACTACATGTTTTGAACTCTAAAAAAATATGTATGCACACACAACGAACAATGTGAAAGTCGGTACCTGATAATGGATTTCACAACCTCTTTGACCGTCTTTTTTGAGAAGTTTTTAAAACAAAGAGTATAGTGAAAACATGTTCAACTAACTATTTTTTAAATTTTGTTCTAGAATTTGAACATTGATGATGGTAGAGGTGTTCATTCCCTCATTGTTTTTATATTATAAACTTAATCGTTTTGAAACTAAGTGTTGTTAATTTTCTGCAGAAGCATTGTTGGGGAGCTAGATGAGGAACTTGATTCTAATTTGGACTTGTCGAAATTGAGAGCTCATCCTCTCAAGCCTGTGATTCATTAATTGGACTGGGAAGTAATGCATGAATGTTTACTGTGAGAATCATGTAGCTTCCATTAACAAGTGAAGCTGTTAATGGTTTTTGGCTTTAACCTTCCCTCACCTTTTACAGCTTTGTTTAGATGGTTGGGCATGAATATTAAATATTTAAAAGTTAAATATTTGGGATATTTAATATTTGTGGTTGAATATGCAAGATAATTAAATGCAGTGAAATTAAATTGTTG

mRNA sequence

ATGCCAAACCAGACCAAAACAAATGCCTCTCGTTTTTCTTCTTCACGCCATCGCCGATTCGCCAGACCAGACGCCATCGCCACCGATCAAAATGCAGCTCCCACTCCCAGCCCAGCCACCGCCCATTTTCCCTCTCTCCCTCGATTTTCACTGTCTCCCGAAAGCTCAGGTAGCCTACGTCGAAGCTCGCCGTCGAAGATCGCGTCTCAGGTTGCGTACGTCGCCGCCGAAGCTCGCATCTCAGGTCGCCTACGTCGTCGCCGAAGCTCAGGTCACCGCCCCTTTTCCCTCTCTCCCTCGAGCAAATTGACCAGAAGCTTGCCGCCGCCCATCCACGTTGCTCAGCCGTCGTCTTCGTCAGTCACTTCCTCGCTGTGTCGCCGCCGTCGTCATCGCTTCTTTCCGGTTCAGTGCCACGTCCGTCTTTCTTCCATTCGTGCAGCCGCAGCCTCCCTCCTAGCGGATTGCACTGACTTCATTTTCTTGTTGTTGTTAAAGCAAGCTTCGTCTATTGTTGAGGAGGAAAAAGATGTTTTGGCGTTGACGTGTGTGGCAGCAGAGATGAACATGGAGAAGGCTATTGGAGTGGCAAATGGACAGTATGTGAGAGTACTAGTTAGGGATCTGTTGGGAATAGTAGTAGTATGCCTTAGAGGTGTGGAGAATTTTGAAACAATATCAGTAATCACGAATGACGGCCGCAATATCGTGGGAGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTTGATGAATCTCATGAACGCGTTTACTCAACCAAGGAAGGAGTGCAGCAACTTGTTTTGGGTCTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAGGAACTTGATTCTAATTTGGACTTGTCGAAATTGAGAGCTCATCCTCTCAAGCCTGTGATTCATTAA

Coding sequence (CDS)

ATGCCAAACCAGACCAAAACAAATGCCTCTCGTTTTTCTTCTTCACGCCATCGCCGATTCGCCAGACCAGACGCCATCGCCACCGATCAAAATGCAGCTCCCACTCCCAGCCCAGCCACCGCCCATTTTCCCTCTCTCCCTCGATTTTCACTGTCTCCCGAAAGCTCAGGTAGCCTACGTCGAAGCTCGCCGTCGAAGATCGCGTCTCAGGTTGCGTACGTCGCCGCCGAAGCTCGCATCTCAGGTCGCCTACGTCGTCGCCGAAGCTCAGGTCACCGCCCCTTTTCCCTCTCTCCCTCGAGCAAATTGACCAGAAGCTTGCCGCCGCCCATCCACGTTGCTCAGCCGTCGTCTTCGTCAGTCACTTCCTCGCTGTGTCGCCGCCGTCGTCATCGCTTCTTTCCGGTTCAGTGCCACGTCCGTCTTTCTTCCATTCGTGCAGCCGCAGCCTCCCTCCTAGCGGATTGCACTGACTTCATTTTCTTGTTGTTGTTAAAGCAAGCTTCGTCTATTGTTGAGGAGGAAAAAGATGTTTTGGCGTTGACGTGTGTGGCAGCAGAGATGAACATGGAGAAGGCTATTGGAGTGGCAAATGGACAGTATGTGAGAGTACTAGTTAGGGATCTGTTGGGAATAGTAGTAGTATGCCTTAGAGGTGTGGAGAATTTTGAAACAATATCAGTAATCACGAATGACGGCCGCAATATCGTGGGAGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTTGATGAATCTCATGAACGCGTTTACTCAACCAAGGAAGGAGTGCAGCAACTTGTTTTGGGTCTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAGGAACTTGATTCTAATTTGGACTTGTCGAAATTGAGAGCTCATCCTCTCAAGCCTGTGATTCATTAA

Protein sequence

MPNQTKTNASRFSSSRHRRFARPDAIATDQNAAPTPSPATAHFPSLPRFSLSPESSGSLRRSSPSKIASQVAYVAAEARISGRLRRRRSSGHRPFSLSPSSKLTRSLPPPIHVAQPSSSSVTSSLCRRRRHRFFPVQCHVRLSSIRAAAASLLADCTDFIFLLLLKQASSIVEEEKDVLALTCVAAEMNMEKAIGVANGQYVRVLVRDLLGIVVVCLRGVENFETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Homology
[Close]
BLAST of Spg014456 vs. NCBI nr
Match: KAG8373548.1 (hypothetical protein BUALT_Bualt11G0036000 [Buddleja alternifolia])

HSP 1 Score: 172.6 bits (436), Expect = 5.5e-39
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 220 VENFETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDN 279
           VE  ETIS+ITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDN
Sbjct: 29  VEQIETISIITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDN 88

Query: 280 ISIVGELDEELDSNLDLSKLRAHPLKPVIH 310
           ISIVGELDEELD++LDLSKLRAHPLKPVIH
Sbjct: 89  ISIVGELDEELDASLDLSKLRAHPLKPVIH 118

[Close]
BLAST of Spg014456 vs. NCBI nr
Match: KAB1227682.1 (U6 snRNA-associated Sm-like protein LSm8 [Morella rubra])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-38
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV
Sbjct: 13  QTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 73  GELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Spg014456 vs. NCBI nr
Match: KAA8542646.1 (hypothetical protein F0562_023855 [Nyssa sinensis])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-38
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV
Sbjct: 95  QTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 154

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 155 GELDEELDSNLDLSKLRAHPLKPVIH 180

[Close]
BLAST of Spg014456 vs. NCBI nr
Match: XP_022155134.1 (sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955137.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955138.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955139.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955140.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022994688.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994689.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994690.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994691.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994692.1 sm-like protein LSM8 [Cucurbita maxima] >XP_023541242.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541244.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541245.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541246.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_038893733.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893734.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893735.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >KAG6573000.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012184.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-38
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV
Sbjct: 13  QTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 73  GELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Spg014456 vs. NCBI nr
Match: KAA8547639.1 (hypothetical protein F0562_004068 [Nyssa sinensis])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-38
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV
Sbjct: 13  QTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 73  GELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Spg014456 vs. ExPASy Swiss-Prot
Match: Q8VYI0 (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-37
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           + ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI ++
Sbjct: 13  QIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 73  GELDEELDASLDFSKLRAHPLKPVVH 98

[Close]
BLAST of Spg014456 vs. ExPASy Swiss-Prot
Match: Q3ZCE0 (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-28
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 220 VENF--ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 279
           +EN+   T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 280 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 310
           DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65  DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]
BLAST of Spg014456 vs. ExPASy Swiss-Prot
Match: O95777 (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-28
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 220 VENF--ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 279
           +EN+   T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 280 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 310
           DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65  DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]
BLAST of Spg014456 vs. ExPASy Swiss-Prot
Match: Q6ZWM4 (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-28
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 220 VENF--ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 279
           +EN+   T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 280 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 310
           DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65  DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]
BLAST of Spg014456 vs. ExPASy Swiss-Prot
Match: Q5RCP3 (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-28
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 220 VENF--ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 279
           +EN+   T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RG
Sbjct: 5   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 280 DNISIVGELDEELDSNLDLSKLRAHPLKPVIH 310
           DN++++GE+DEE DS LDL  +RA PL  V H
Sbjct: 65  DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]
BLAST of Spg014456 vs. ExPASy TrEMBL
Match: A0A6J1K221 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC111490340 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV
Sbjct: 13  QTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 73  GELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Spg014456 vs. ExPASy TrEMBL
Match: A0A1S3ATI1 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV
Sbjct: 13  QTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 73  GELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Spg014456 vs. ExPASy TrEMBL
Match: A0A6J1GT46 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111457194 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV
Sbjct: 13  QTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 73  GELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Spg014456 vs. ExPASy TrEMBL
Match: A0A6A1WQX6 (U6 snRNA-associated Sm-like protein LSm8 OS=Morella rubra OX=262757 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV
Sbjct: 13  QTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 73  GELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Spg014456 vs. ExPASy TrEMBL
Match: A0A0A0LT86 (U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis sativus OX=3659 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-39
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV
Sbjct: 13  QTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 73  GELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Spg014456 vs. TAIR 10
Match: AT1G65700.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-38
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           + ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI ++
Sbjct: 13  QIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 73  GELDEELDASLDFSKLRAHPLKPVVH 98

[Close]
BLAST of Spg014456 vs. TAIR 10
Match: AT1G65700.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-38
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIV 283
           + ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI ++
Sbjct: 13  QIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVI 72

Query: 284 GELDEELDSNLDLSKLRAHPLKPVIH 310
           GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 73  GELDEELDASLDFSKLRAHPLKPVVH 98

[Close]
BLAST of Spg014456 vs. TAIR 10
Match: AT1G65700.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-32
Identity = 75/129 (58.14%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 224 ETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK--------------------- 283
           + ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK                     
Sbjct: 13  QIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILRKLTQIFKIGLVL 72

Query: 284 ----------------------EGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLR 310
                                 EGVQQ VLGLYIIRGDNI ++GELDEELD++LD SKLR
Sbjct: 73  QFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLR 132

[Close]
BLAST of Spg014456 vs. TAIR 10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 62.0 bits (149), Expect = 9.7e-10
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 228 VITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELD 287
           V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG+N+ ++GELD
Sbjct: 25  VLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRGENVVLIGELD 84

Query: 288 EE 290
            E
Sbjct: 85  VE 85

[Close]
BLAST of Spg014456 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 58.9 bits (141), Expect = 8.2e-09
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 228 VITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELD 287
           V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG+N+ ++GELD
Sbjct: 25  VLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIGELD 84

Query: 288 EE 290
            E
Sbjct: 85  TE 85

The following BLAST results are available for this feature:
BLAST of Spg014456 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8373548.15.5e-3994.44hypothetical protein BUALT_Bualt11G0036000 [Buddleja alternifolia][more]
KAB1227682.11.2e-3898.84U6 snRNA-associated Sm-like protein LSm8 [Morella rubra][more]
KAA8542646.11.2e-3898.84hypothetical protein F0562_023855 [Nyssa sinensis][more]
XP_022155134.11.2e-3898.84sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 ... [more]
KAA8547639.11.2e-3898.84hypothetical protein F0562_004068 [Nyssa sinensis][more]
BLAST of Spg014456 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VYI02.4e-3787.21Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1[more]
Q3ZCE02.6e-2863.04U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3[more]
O957772.6e-2863.04U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV... [more]
Q6ZWM42.6e-2863.04U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 S... [more]
Q5RCP32.6e-2863.04U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV... [more]
BLAST of Spg014456 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K2215.9e-3998.84U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A1S3ATI15.9e-3998.84U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis melo OX=3656 GN=LOC103482675... [more]
A0A6J1GT465.9e-3998.84U6 snRNA-associated Sm-like protein LSm8 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6A1WQX65.9e-3998.84U6 snRNA-associated Sm-like protein LSm8 OS=Morella rubra OX=262757 GN=LSM8 PE=3... [more]
A0A0A0LT865.9e-3998.84U6 snRNA-associated Sm-like protein LSm8 OS=Cucumis sativus OX=3659 GN=LSM8 PE=3... [more]
BLAST of Spg014456 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G65700.11.7e-3887.21Small nuclear ribonucleoprotein family protein [more]
AT1G65700.21.7e-3887.21Small nuclear ribonucleoprotein family protein [more]
AT1G65700.33.1e-3258.14Small nuclear ribonucleoprotein family protein [more]
AT1G19120.19.7e-1046.77Small nuclear ribonucleoprotein family protein [more]
AT3G14080.18.2e-0945.16Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 218..285
e-value: 5.3E-11
score: 52.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 224..284
e-value: 1.4E-14
score: 53.5
NoneNo IPR availableGENE3D2.30.30.100coord: 223..308
e-value: 6.2E-23
score: 82.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..118
NoneNo IPR availablePANTHERPTHR15588:SF9U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8coord: 224..309
IPR044642U6 snRNA-associated Sm-like protein Lsm1/8PANTHERPTHR15588LSM1coord: 224..309
IPR034103Sm-like protein Lsm8CDDcd01727LSm8coord: 224..305
e-value: 3.31527E-47
score: 151.909
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 225..292

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg014456.1Spg014456.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding