Spg014420 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014420
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box protein At3g07870-like
Location	scaffold3: 41966124 .. 41969910 (+)
RNA-Seq Expression	Spg014420
Synteny	Spg014420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGGGAGGATGGAGAAGAAGAAGCGGAAAAGAAGGATTAGAAACATAAATTCAGAGCTTCCAGCTGATACTGTTCAGGTAATACTCTCGAAAGTCCCCTTGTTCGATTTGCCGAGTTGCAGGCTGGTCTGCAAAGCATGGAACAATCTGATTTTGAGTTGTAAGTTTGATCCCCCAATCTTAATTTCCAACCTCTTCTTTGCCCATATTTCTCCCTTTCGCAAGCTCCATTGTGTGGATTTCGATCCCAAGCATTTGGGAGGGATGAGTAGCGTTGCCTCATTTAGGTTCGATGCCAAAAGTAAAATAGATTTCTGCTCCTCTGGTATCTTCATTATCAATTCCTGCAATGGACTCCTTTTTCTTAATATCGTGAAAAATCGTCGAGGTCAAGGTCGACGTCGTGTTCTTGGCATACTAAATCCGATGACAAATGAGTACATCAAACTTCCCTCCTCCAAATCCAAAGGGGAAGGGGATCGCTACGGATTAGGATTTAGTCCTAAAACAAAGCAGTACAAAATAGCAAGAACCTGCTTTCTACCTGATGAATGCACTACCTTGGTAGAAATTTTTTGCATTTGGCACGAGTCATACTCATCGCCAATGGACACCTGTGGGGTTTTTGCCTAATCGTTCCATTTTTTACCGTGGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTGATTGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTGATTGTGCTCAATCCATTTGCCGTTTGGATATAGAAAATGAGAAATTGGAGCAGATTTCTCTTCCCCGGGATGACGGCCTTGCTGATTTCATTGGAGTCGTCAATGGCAGCCTCTATCTAACTATTTGCGCCCCGATGGAGTATGACGATAACGTTGAAGAGTACCAGGTGTGGAAGATGGAAGAAGATTGTTCATGGATTAAAGCATTTGGTCTTCAGGAACCCAAAAATTTAGATTGTCCTGGGCATGATCTTCCTTTGCAATGTACAGGAATTTTTTTATATAACCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATGTTGTGTCTTTTTGGTGGATTCCATTTACTTCTGTATGACCCCAAGACTCAGAGGGTGGAGGTATTGACGGATCAAGATCTTAACAAACATATGTGTGTTCATCGGATTGACTCCAATTTTAATTCTCTCTGCAACATTTTGGCAGGAAAGTGTTGAAGCCCTGTTTTTATTTGTCTTGAGGGAGGGGAAGATGTGGACCACTTGTTTCTTCATTGTCATTTTGCGTTTCAATCGTGGGGTTGGTTGGCTGAAAGGTTGGGAATCCATTTCTGTTTACCTAAGAAGATTGATGATTAGTTGATGGAAGGCCTTCATGCGTGGAATCTGAGAAAGAAAGCCAAAATAATTGGCAATTGTGCGTTTAGAGCTCTGTTATGACACATTTGGCTAGAACGAAATGCTAGATCTTTTGAAGATAAGTCCCTTAATCTGATATTTTTTGTAATCATGTACATAACACGACCTCATGGTGGATATCTTTAAATAGGAAATTATTTTGTAATTACAGCCTCTTGATGATAGCTAAAGATTGGAAAGCTCTTGTTATTTAGTGTTTTGGGGGGTTTTCTCTACCCGGCCCTTAGGATGTCTTCCTTTCTTGGAATGGAATGATATCCTTTTGCCATTTCTTATCAAAATATATATATATATCTCATTAACGTAGGATATTTTTTTTTTTCTTTTTTGGAGATAATTTATGTAGCGAGTATATTTGCATTTTTAGATGGTAGTTTGTTACTGCACTCTTAAAACCAATATCAGTAATACTAAATTTCAGTTGATTCAACATGATATAACCTCTCAACTGCATTTTCTGTGCTAGCTATCTATATGTACCTTCATAACTTCCACTATTATACCCTTTTCGAGTTGCTCTCCGTTTAAAAATGACCATTTTATTCTATTAATTTTTTTTTTCTAATTACCCTCCAATATTTCGAGGATTTTGTTCTTGAAGTGTTCTTTTGATAAATATAAAATGATTAAGATTTTAAATGTCACTCGGGACATAGAAGGTAAAATTTTATCCCCTTATAAAAATTTTGTCTGGAAGAAAATGAGATTTGTTCTCATCGGGACTCTAGGTTTCTTAAAACATATTTATGCTTTTCAAAAACTCGCTCTTTTCTACTCGACACTCGTTATTTTTCTCATTTTTTCTTCTTTGACAATCCTTTTTTTTTTCTTGGACACGCGTGTCGTGGTTGTCACGTTAGTTAAAAAAAAAATATTTTAAAAAAAATTATAGTTCTAAAGTAAATTAAAAAAAATAAATAAATAAATTTAAATTGTCACCTTGGGTATTTTGATCAATATACTTAAAAAAAAAAAATACTCACCTTGGATTAAATTAATAATTTTCCATGCTTGTAAAAATTTAAATTTGACCATTTGCACTAAAAAAATATAAAAAAAAGTAAAGCCAACAAGAACTTAGCTCAACTGGCATAAAGTTGAATCCATAACCATAAGTTCTGTGGTTCGAATCTCCCTTCCCCACATATTGTCAAAAAAAAAATAATAAAAATAAAAAAAAAGTAAATTTGAACAAAAAAGTTTCAACTATTTTTTTCCAAGTATAGTGAGTATAGCTGGTTAAGTGCATGTTTGAGTGACTAAAATCATTTTTGTCAGTTTCAAAATCACCCCGAAAACATATATATTTAATTATTGAACTAAAAAAAACATGTGATTTTCATATCATCAAAATTAATTTTGAATTGTTTGAGGGATATCTCAGAGTGATTTTGAATACTACCAAATGATTTTGACCATTTTAAAATCACTCTCATACATGCATTAAAACATTTACTTGTTTTTTAGATGTCGAAATTCCATTTCCTATCTCCATATTTATTGTATTAAAATTAAAAATATTTTTTTTATATAAAAAAGAATACTTAATTTTAAATTAATTATTGTTCTTAATATATTTCTTTTCCTTATCTGATTCTGATATTCTCTTAAAAGCTATTAATTAATTTTTATTTTTTTTTAAAAAAAAAAAGAGATGTGACATGAGTTTTAAATCTGGTTGTCGCCATGATGTGACATCACTTCTTCATTTCCCCTCATTTTCCCCAACCTTTTCTCTCCTTCCTCCAAGGATGAAGATCACAGTCAGTGCCATTGAAGGTTCTAAATATACATCCTTGTGTTGAAGTTACCGTGGACGAGTTCAAAATTCATACTGTAGTAACAAACATCAATCGAGAAGTTCGAAGGTGGGTAAGCAAGGTTTTTAGAAAAATGGCAGCCAAAATTTGGTCGTCGGACTCAACGTCAAATAGGAGAAATGAGGATCGGGTACTGATCTCACTGTGTGCGGGAGCCGATTGTCTGATTTACAAGATGGTTTTGGTTGGACCAGAAGAAGCATCATCTCGGCTCCGATACTTCCTAAGGCGTCCTACAGTCACGTTCGTTGGGCTGAATCTCAACAAAGACGCTCGGCCTATCAACCGAACATTTGATTGCTTCGTGAAGAAAAAGGTTGAATTAAAACGTCTGGCGACACCTAGAAACTTCAGGAGAAGCAATATGACATTTCACCATCTTGCGGAAGAACTAGGAATTTCAATCAAGAAGGACAAGAAGATCTGGTTCAATGACTTGGAGAACGTTAGCCTCAAACAGGTGAAATATGCATCCATACATGCGTTTATCTCGGCTTCCATTGAGAAGCGTAGGCTTGGATGA

mRNA sequence

ATGGTGGAGGGGAGGATGGAGAAGAAGAAGCGGAAAAGAAGGATTAGAAACATAAATTCAGAGCTTCCAGCTGATACTGTTCAGAAATTTTTTGCATTTGGCACGAGTCATACTCATCGCCAATGGACACCTGTGGGGTTTTTGCCTAATCGTTCCATTTTTTACCGTGGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTGATTGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTGATTGTGCTCAATCCATTTGCCGTTTGGATATAGAAAATGAGAAATTGGAGCAGATTTCTCTTCCCCGGGATGACGGCCTTGCTGATTTCATTGGAGTCGTCAATGGCAGCCTCTATCTAACTATTTGCGCCCCGATGGAGTATGACGATAACGTTGAAGAGTACCAGGTGTGGAAGATGGAAGAAGATTGTTCATGGATTAAAGCATTTGGTCTTCAGGAACCCAAAAATTTAGATTGTCCTGGGCATGATCTTCCTTTGCAATGTACAGGAATTTTTTTATATAACCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATGTTGTGTCTTTTTGGTGGATTCCATTTACTTCTGTATGACCCCAAGACTCAGAGGGTGGAGGAAAGTGTTGAAGCCCTGTTTTTATTTGTCTTGAGGGAGGGGAAGATGTGGACCACTTGTTTCTTCATTGTCATTTTGCGTTTCAATCGTGGGGTTGGTTGGCTGAAAGCCGATTGTCTGATTTACAAGATGGTTTTGGTTGGACCAGAAGAAGCATCATCTCGGCTCCGATACTTCCTAAGGCGTCCTACAGTCACGTTCGTTGGGCTGAATCTCAACAAAGACGCTCGGCCTATCAACCGAACATTTGATTGCTTCGTGAAGAAAAAGGTTGAATTAAAACGTCTGGCGACACCTAGAAACTTCAGGAGAAGCAATATGACATTTCACCATCTTGCGGAAGAACTAGGAATTTCAATCAAGAAGGACAAGAAGATCTGGTTCAATGACTTGGAGAACGTTAGCCTCAAACAGGTGAAATATGCATCCATACATGCGTTTATCTCGGCTTCCATTGAGAAGCGTAGGCTTGGATGA

Coding sequence (CDS)

ATGGTGGAGGGGAGGATGGAGAAGAAGAAGCGGAAAAGAAGGATTAGAAACATAAATTCAGAGCTTCCAGCTGATACTGTTCAGAAATTTTTTGCATTTGGCACGAGTCATACTCATCGCCAATGGACACCTGTGGGGTTTTTGCCTAATCGTTCCATTTTTTACCGTGGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTGATTGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTGATTGTGCTCAATCCATTTGCCGTTTGGATATAGAAAATGAGAAATTGGAGCAGATTTCTCTTCCCCGGGATGACGGCCTTGCTGATTTCATTGGAGTCGTCAATGGCAGCCTCTATCTAACTATTTGCGCCCCGATGGAGTATGACGATAACGTTGAAGAGTACCAGGTGTGGAAGATGGAAGAAGATTGTTCATGGATTAAAGCATTTGGTCTTCAGGAACCCAAAAATTTAGATTGTCCTGGGCATGATCTTCCTTTGCAATGTACAGGAATTTTTTTATATAACCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATGTTGTGTCTTTTTGGTGGATTCCATTTACTTCTGTATGACCCCAAGACTCAGAGGGTGGAGGAAAGTGTTGAAGCCCTGTTTTTATTTGTCTTGAGGGAGGGGAAGATGTGGACCACTTGTTTCTTCATTGTCATTTTGCGTTTCAATCGTGGGGTTGGTTGGCTGAAAGCCGATTGTCTGATTTACAAGATGGTTTTGGTTGGACCAGAAGAAGCATCATCTCGGCTCCGATACTTCCTAAGGCGTCCTACAGTCACGTTCGTTGGGCTGAATCTCAACAAAGACGCTCGGCCTATCAACCGAACATTTGATTGCTTCGTGAAGAAAAAGGTTGAATTAAAACGTCTGGCGACACCTAGAAACTTCAGGAGAAGCAATATGACATTTCACCATCTTGCGGAAGAACTAGGAATTTCAATCAAGAAGGACAAGAAGATCTGGTTCAATGACTTGGAGAACGTTAGCCTCAAACAGGTGAAATATGCATCCATACATGCGTTTATCTCGGCTTCCATTGAGAAGCGTAGGCTTGGATGA

Protein sequence

MVEGRMEKKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVEESVEALFLFVLREGKMWTTCFFIVILRFNRGVGWLKADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRSNMTFHHLAEELGISIKKDKKIWFNDLENVSLKQVKYASIHAFISASIEKRRLG

Homology

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BLAST of Spg014420 vs. NCBI nr
Match: XP_038883771.1 (putative F-box protein At1g60370 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-38
Identity = 97/195 (49.74%), Postives = 116/195 (59.49%), Query Frame = 0


Query: 26  TVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWI 85
           T  + FAFGT+   R+WTPVG LP+  +   GVYFNGGLYW  D                
Sbjct: 186 TSVEIFAFGTT---REWTPVGVLPSLVVEDHGVYFNGGLYWTVD---------------- 245

Query: 86  GDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEE 145
            ++   D   +I RLDIENEKLE+IS P   G   F GV +G+LYLT      Y   V+ 
Sbjct: 246 -ELQPRDSNNAIYRLDIENEKLEKISCPHYGGGHFFFGVFDGTLYLT-----TYTGTVDN 305

Query: 146 -YQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFG 205
            YQVWKMEE+ SWIKAF L  P+NL  P HD P   +      LQPIK CEDGK+LCL  
Sbjct: 306 IYQVWKMEENLSWIKAFVLSRPENLRHPEHDQPWGVS-----QLQPIKVCEDGKILCLLA 350

Query: 206 GFHLLLYDPKTQRVE 220
           GF L+LYDPKT+RV+
Sbjct: 366 GFLLILYDPKTKRVK 350

[Close]

BLAST of Spg014420 vs. NCBI nr
Match: XP_004134745.1 (F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g07870 [Cucumis sativus] >XP_031743637.1 F-box protein At3g07870 [Cucumis sativus] >KGN49139.1 hypothetical protein Csa_003023 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 6.9e-36
Identity = 89/194 (45.88%), Postives = 114/194 (58.76%), Query Frame = 0


Query: 26  TVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWI 85
           T+ + F FG+  TH+ WTPVGFLP+  +   GVYF GGLYW+ +  D             
Sbjct: 184 TLVEIFTFGS--THQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPD------------- 243

Query: 86  GDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEE 145
                     +I RLD+ENEKLE+IS P+  G   F GV +G+LYLT+           +
Sbjct: 244 ---PHDSSISAIYRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTV-------SKNNK 303

Query: 146 YQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGG 205
           YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    L PIKACEDGK+LCL  G
Sbjct: 304 YQVWKMKDNFSWIKAFVISRPRNLCHPDH--PHQPWGV--SQLDPIKACEDGKILCLLAG 348

Query: 206 FHLLLYDPKTQRVE 220
            HL+LYDPKT+  E
Sbjct: 364 LHLILYDPKTKSAE 348

[Close]

BLAST of Spg014420 vs. NCBI nr
Match: TYK13067.1 (putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 4.5e-35
Identity = 93/212 (43.87%), Postives = 121/212 (57.08%), Query Frame = 0


Query: 8   KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWI 67
           KKK+ +  R       + T+ + FAFG+  T++ WT VGFLP+  +   GVYFNGGLYW+
Sbjct: 166 KKKQYKIARTSFRPDESTTLVEIFAFGS--TYQVWTSVGFLPSLVVEDHGVYFNGGLYWV 225

Query: 68  GDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNG 127
            +  D                       +I RLDIENE LE+IS P+  G   F GV +G
Sbjct: 226 ANQPD----------------PHDSSISTIYRLDIENENLEKISCPQHLGGHFFFGVFDG 285

Query: 128 SLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYN 187
           +LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    
Sbjct: 286 TLYLTV-------SKNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDH--PHQPWGV--SQ 345

Query: 188 LQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE 220
           L PIKACEDGK+LCL  G HL+LYDPKT+  E
Sbjct: 346 LDPIKACEDGKILCLLAGLHLILYDPKTKSAE 348

[Close]

BLAST of Spg014420 vs. NCBI nr
Match: XP_008439950.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 2.2e-34
Identity = 92/212 (43.40%), Postives = 120/212 (56.60%), Query Frame = 0


Query: 8   KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWI 67
           KKK+ +  R       + T+ + FAFG+   ++ WT VGFLP+  +   GVYFNGGLYW+
Sbjct: 166 KKKQYKIARTSFRPDESTTLVEIFAFGS--IYQVWTSVGFLPSLVVEDHGVYFNGGLYWV 225

Query: 68  GDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNG 127
            +  D                       +I RLDIENE LE+IS P+  G   F GV +G
Sbjct: 226 ANQPD----------------PHDSSISTIYRLDIENENLEKISCPQHLGGHFFFGVFDG 285

Query: 128 SLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYN 187
           +LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    
Sbjct: 286 TLYLTV-------SKNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDH--PHQPWGV--SQ 345

Query: 188 LQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE 220
           L PIKACEDGK+LCL  G HL+LYDPKT+  E
Sbjct: 346 LDPIKACEDGKILCLLAGLHLILYDPKTKSAE 348

[Close]

BLAST of Spg014420 vs. NCBI nr
Match: XP_004135796.1 (putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical protein Csa_007182 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 7.1e-33
Identity = 89/189 (47.09%), Postives = 107/189 (56.61%), Query Frame = 0


Query: 31  FAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCD 90
           FAFGTS    +WTPVG +PN    Y GVY NGGLYW+G          NGG+        
Sbjct: 189 FAFGTS---CEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQ-----KLPNGGI-------- 248

Query: 91  CDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWK 150
            D  + I RLD+++EK E+IS P D G   +I V NG+LYLT C   ++D     Y  WK
Sbjct: 249 SDYTEVIYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCE-DFD-----YHAWK 308

Query: 151 MEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLL 210
           MEED SW K F L  P+N+    H L     G   Y LQ IK CEDG +LCL+ G  L+L
Sbjct: 309 MEEDFSWSKEFVLALPENVH---HSLRHHPIG---YYLQLIKFCEDGNILCLYAGILLIL 349

Query: 211 YDPKTQRVE 220
           YDP TQ VE
Sbjct: 369 YDPSTQTVE 349

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BLAST of Spg014420 vs. ExPASy TrEMBL
Match: A0A0A0KJY9 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-36
Identity = 89/194 (45.88%), Postives = 114/194 (58.76%), Query Frame = 0


Query: 26  TVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWI 85
           T+ + F FG+  TH+ WTPVGFLP+  +   GVYF GGLYW+ +  D             
Sbjct: 184 TLVEIFTFGS--THQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPD------------- 243

Query: 86  GDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEE 145
                     +I RLD+ENEKLE+IS P+  G   F GV +G+LYLT+           +
Sbjct: 244 ---PHDSSISAIYRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTV-------SKNNK 303

Query: 146 YQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGG 205
           YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    L PIKACEDGK+LCL  G
Sbjct: 304 YQVWKMKDNFSWIKAFVISRPRNLCHPDH--PHQPWGV--SQLDPIKACEDGKILCLLAG 348

Query: 206 FHLLLYDPKTQRVE 220
            HL+LYDPKT+  E
Sbjct: 364 LHLILYDPKTKSAE 348

[Close]

BLAST of Spg014420 vs. ExPASy TrEMBL
Match: A0A5D3CM94 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006720 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-35
Identity = 93/212 (43.87%), Postives = 121/212 (57.08%), Query Frame = 0


Query: 8   KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWI 67
           KKK+ +  R       + T+ + FAFG+  T++ WT VGFLP+  +   GVYFNGGLYW+
Sbjct: 166 KKKQYKIARTSFRPDESTTLVEIFAFGS--TYQVWTSVGFLPSLVVEDHGVYFNGGLYWV 225

Query: 68  GDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNG 127
            +  D                       +I RLDIENE LE+IS P+  G   F GV +G
Sbjct: 226 ANQPD----------------PHDSSISTIYRLDIENENLEKISCPQHLGGHFFFGVFDG 285

Query: 128 SLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYN 187
           +LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    
Sbjct: 286 TLYLTV-------SKNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDH--PHQPWGV--SQ 345

Query: 188 LQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE 220
           L PIKACEDGK+LCL  G HL+LYDPKT+  E
Sbjct: 346 LDPIKACEDGKILCLLAGLHLILYDPKTKSAE 348

[Close]

BLAST of Spg014420 vs. ExPASy TrEMBL
Match: A0A1S3B0Q6 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103484583 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-34
Identity = 92/212 (43.40%), Postives = 120/212 (56.60%), Query Frame = 0


Query: 8   KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWI 67
           KKK+ +  R       + T+ + FAFG+   ++ WT VGFLP+  +   GVYFNGGLYW+
Sbjct: 166 KKKQYKIARTSFRPDESTTLVEIFAFGS--IYQVWTSVGFLPSLVVEDHGVYFNGGLYWV 225

Query: 68  GDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNG 127
            +  D                       +I RLDIENE LE+IS P+  G   F GV +G
Sbjct: 226 ANQPD----------------PHDSSISTIYRLDIENENLEKISCPQHLGGHFFFGVFDG 285

Query: 128 SLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYN 187
           +LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    
Sbjct: 286 TLYLTV-------SKNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDH--PHQPWGV--SQ 345

Query: 188 LQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE 220
           L PIKACEDGK+LCL  G HL+LYDPKT+  E
Sbjct: 346 LDPIKACEDGKILCLLAGLHLILYDPKTKSAE 348

[Close]

BLAST of Spg014420 vs. ExPASy TrEMBL
Match: A0A0A0M1M5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-33
Identity = 89/189 (47.09%), Postives = 107/189 (56.61%), Query Frame = 0


Query: 31  FAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCD 90
           FAFGTS    +WTPVG +PN    Y GVY NGGLYW+G          NGG+        
Sbjct: 189 FAFGTS---CEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQ-----KLPNGGI-------- 248

Query: 91  CDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWK 150
            D  + I RLD+++EK E+IS P D G   +I V NG+LYLT C   ++D     Y  WK
Sbjct: 249 SDYTEVIYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCE-DFD-----YHAWK 308

Query: 151 MEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLL 210
           MEED SW K F L  P+N+    H L     G   Y LQ IK CEDG +LCL+ G  L+L
Sbjct: 309 MEEDFSWSKEFVLALPENVH---HSLRHHPIG---YYLQLIKFCEDGNILCLYAGILLIL 349

Query: 211 YDPKTQRVE 220
           YDP TQ VE
Sbjct: 369 YDPSTQTVE 349

[Close]

BLAST of Spg014420 vs. ExPASy TrEMBL
Match: A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-30
Identity = 89/207 (43.00%), Postives = 118/207 (57.00%), Query Frame = 0


Query: 31  FAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCD 90
           FAFGTS    +WTP+G +PN    Y GVYFNGGLYW+G          NGGL        
Sbjct: 188 FAFGTS---CEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLP----NGGL-------- 247

Query: 91  CDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWK 150
            D    + RLD+ +EK ++IS+P   G   ++GV NG+LYLT+C   ++D     Y VWK
Sbjct: 248 SDYTGVVYRLDLNDEKFKKISIP-FGGDEPYVGVYNGTLYLTLCCE-DFD-----YHVWK 307

Query: 151 MEEDCSWIKAFGLQEPKNLDCPGH-DLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLL 210
           M+ED SW K F L  P+N+    H   P+       Y LQ +K CEDG +LCL  G  L+
Sbjct: 308 MKEDFSWSKEFVLALPENILHSLHRHHPIG------YYLQLVKFCEDGSILCLCAGILLI 363

Query: 211 LYDPKTQRVEESVEALFLFVLREGKMW 237
           +YDPKTQ++E   +    F ++EG MW
Sbjct: 368 VYDPKTQQMEILTDQ--DFEIKEG-MW 363

The following BLAST results are available for this feature:

BLAST of Spg014420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883771.1	1.9e-38	49.74	putative F-box protein At1g60370 [Benincasa hispida]	[more]
XP_004134745.1	6.9e-36	45.88	F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g0787...	[more]
TYK13067.1	4.5e-35	43.87	putative F-box protein [Cucumis melo var. makuwa]	[more]
XP_008439950.1	2.2e-34	43.40	PREDICTED: putative F-box protein At3g21120 [Cucumis melo]	[more]
XP_004135796.1	7.1e-33	47.09	putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical prot...	[more]

BLAST of Spg014420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg014420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJY9	3.3e-36	45.88	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 ...	[more]
A0A5D3CM94	2.2e-35	43.87	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3B0Q6	1.1e-34	43.40	putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103484583 PE=4 SV...	[more]
A0A0A0M1M5	3.5e-33	47.09	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 ...	[more]
A0A5D3CIX9	1.2e-30	43.00	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]

BLAST of Spg014420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 253..374 e-value: 7.3E-14 score: 53.7
None	No IPR available	PANTHER	PTHR47993	OS09G0372900 PROTEIN-RELATED	coord: 40..175
None	No IPR available	PANTHER	PTHR47993:SF20	F-BOX FAMILY PROTEIN	coord: 40..175
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 258..373

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014420.1	Spg014420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding