Spg014337 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014337
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	MMS19 nucleotide excision repair protein
Location	scaffold3: 48465291 .. 48466762 (-)
RNA-Seq Expression	Spg014337
Synteny	Spg014337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGACGGTACTTTTTGGGCTGTGAGTTTTGGTATTCTGGAGAGTAAGAGGAGCTCCCAAATTTTCTCCTGGAATCTGGATATAAACTTCTGTGCGTTCAATAAATAATTGTGAGTTTCGTTAGTTGCTTGCCTTATTTCTTTCTTTCTTTTCTTTTCTTTTTTAATACAGCCAGAACACTTAAACAGTTATCTGGTTCCAAGAACAAAAAGCAACAAGTTACTTATTGTCGACTGTATTCAAAATTTATCTAACCTCATCCTTATGAGATACACAATTGGTCTTTAACTTTTAGTTGGAGAAAACCGATGAGTCCTAATGTGAGAGAGCAGAGTATTTGCAGTGTAATAGGCTTTGAGTTTGTCTGCATTTTTTCTATGGGCTAGGAAGGTCCCCTTTTGTTGTTAGGTAATTTACTTCTTATGGTAAATTCAGTTACCAAGCCTCTAGGATTGACTGTGCCAGTGGCCCAGTGCAAGGGGAAAGTTTAATAAAAAGGAAAGAGGTGACGAGAGGTTGGGGCCAAAACATACATAGGTGGGATAACCAGGAGTCATCAAATTCTCATGAGTGTGTCAGTGTCTTACCTTTTTGGGAACTCATGAATCTATATAAACTTTTATTCTTTCAATACAAGTACCAAACTTCACAGATTCTTTGATCCGGTTCTAAGAGGATCTGCTCATGCTGCAGGACAAGAAACTGTCACAGAGAATGCTCACAGAATCCTTGATTGCCTTGCTGGACTTACTGCCTTTTCTCATATGATGGTATGAAGTAATTTTCTTGATCATCATTTTATTGCGACTGTTTCCACTGCTGATATTCTCCTGATATATTAATTGGCCTTTTTTTTGAGTCCTCTGAAATACTTCAAGTAAGGCAACTGTTTCCACTATCTGCTCTTTGCTTTAGTAGTATCGTTCTCTGCCCTCAGTTCCTTGGGGTTAGGTAGATATGGTTTAATAATTTGTATCATCGGGATTTCCTTGCATGACTTCCTAGGTCTGAACTTTCTCAATTTTAAACACAAAACGGTGTATTATTTGTTAACCCCAAATAAACCAGCATGTCGTCTCGCCATTCTTTGTTATCAAATTCAATTAGGAATAGCAGTGATGCTAGCATATTATACTATTATACTAAAACCTGAAGGATATGCATTATTCAGCTTGTACGGGAAACTGCAATTCAGTGCCTTGTCGCCATGTCTGAGCTGCCCCATGCAAGGATATACCCCATGAGAAAACAGGTAGCCCGAGGATTATTCCTTGCACTGAATGTTTCCCCCTCGGTTTGGGCTTTCTACCCTGCTTATGATCCTGAATTATATTCTGCCCCATGAAATGTGTCATCTTCAGGTACTACATGCGATATCAAAAGCTCTTGATGATCCAAAGAGATCTGTTCGACAGGAAGCTGTCAGATGTCGACAAGCATGGTCAGTGATGTTGCTTATGATTCCATGA

mRNA sequence

ATGATGCTTGTACGGGAAACTGCAATTCAGTGCCTTGTCGCCATGTCTGAGCTGCCCCATGCAAGGATATACCCCATGAGAAAACAGGTACTACATGCGATATCAAAAGCTCTTGATGATCCAAAGAGATCTGTTCGACAGGAAGCTGTCAGATGTCGACAAGCATGGTCAGTGATGTTGCTTATGATTCCATGA

Coding sequence (CDS)

ATGATGCTTGTACGGGAAACTGCAATTCAGTGCCTTGTCGCCATGTCTGAGCTGCCCCATGCAAGGATATACCCCATGAGAAAACAGGTACTACATGCGATATCAAAAGCTCTTGATGATCCAAAGAGATCTGTTCGACAGGAAGCTGTCAGATGTCGACAAGCATGGTCAGTGATGTTGCTTATGATTCCATGA

Protein sequence

MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVMLLMIP

Homology

[Close]

BLAST of Spg014337 vs. NCBI nr
Match: XP_038898521.1 (MMS19 nucleotide excision repair protein homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR+QVLHAISKALDDPKR+VRQEAVRCRQAW+
Sbjct: 1034 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWA 1090

[Close]

BLAST of Spg014337 vs. NCBI nr
Match: XP_038898520.1 (MMS19 nucleotide excision repair protein homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR+QVLHAISKALDDPKR+VRQEAVRCRQAW+
Sbjct: 1082 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWA 1138

[Close]

BLAST of Spg014337 vs. NCBI nr
Match: XP_038898522.1 (MMS19 nucleotide excision repair protein homolog isoform X3 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR+QVLHAISKALDDPKR+VRQEAVRCRQAW+
Sbjct: 1008 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWA 1064

[Close]

BLAST of Spg014337 vs. NCBI nr
Match: XP_004141784.1 (MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis sativus] >KGN45580.1 hypothetical protein Csa_016609 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 9.0e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR+QVLH ISKALDDPKRSVRQEAVRCRQAW+
Sbjct: 1082 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHVISKALDDPKRSVRQEAVRCRQAWA 1138

[Close]

BLAST of Spg014337 vs. NCBI nr
Match: XP_011659674.1 (MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis sativus] >XP_031745192.1 MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis sativus] >XP_031745193.1 MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis sativus] >XP_031745194.1 MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 9.0e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR+QVLH ISKALDDPKRSVRQEAVRCRQAW+
Sbjct: 970  MMLVRETAIQCLVAVSELPHARIYPMRRQVLHVISKALDDPKRSVRQEAVRCRQAWA 1026

[Close]

BLAST of Spg014337 vs. ExPASy Swiss-Prot
Match: Q0WVF8 (MMS19 nucleotide excision repair protein homolog OS=Arabidopsis thaliana OX=3702 GN=MMS19 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-18
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            +M+VRET+IQCLVA+ ELPH RIYP R++VL AI K+LDDPKR VR+EA+RCRQAW+
Sbjct: 1069 LMVVRETSIQCLVALLELPHRRIYPFRREVLQAIEKSLDDPKRKVREEAIRCRQAWA 1125

[Close]

BLAST of Spg014337 vs. ExPASy Swiss-Prot
Match: Q6DCF2 (MMS19 nucleotide excision repair protein homolog OS=Xenopus laevis OX=8355 GN=mms19 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-07
Identity = 26/58 (44.83%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 2    MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM 60
            M VR TA++C++A+++LP   + P ++QV+ A++K LDD KR VR+EAV  R  W ++
Sbjct: 960  MAVRITALKCILALTKLPLHMLLPYKQQVIRALAKPLDDKKRLVRKEAVETRCQWFLL 1017

[Close]

BLAST of Spg014337 vs. ExPASy Swiss-Prot
Match: Q0V9L1 (MMS19 nucleotide excision repair protein homolog OS=Xenopus tropicalis OX=8364 GN=mms19 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-07
Identity = 26/58 (44.83%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 2    MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM 60
            M VR TA++C++A+++LP   + P ++QV+ A++K LDD KR VR+EAV  R  W ++
Sbjct: 960  MAVRITALKCILALTKLPLHMLLPYKQQVIRALAKPLDDKKRLVRKEAVETRCQWFLL 1017

[Close]

BLAST of Spg014337 vs. ExPASy Swiss-Prot
Match: Q9D071 (MMS19 nucleotide excision repair protein homolog OS=Mus musculus OX=10090 GN=Mms19 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-07
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 2    MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM 60
            M VR  A+QC+ A++ LP + + P + QV+ A++K LDD KR VR+EAV  R  W ++
Sbjct: 969  MAVRIAALQCMHALTRLPTSVLLPYKSQVIRALAKPLDDKKRLVRKEAVSARGEWFLL 1026

[Close]

BLAST of Spg014337 vs. ExPASy Swiss-Prot
Match: E1BP36 (MMS19 nucleotide excision repair protein homolog OS=Bos taurus OX=9913 GN=MMS19 PE=2 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-06
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 2    MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM 60
            M VR  A+QC+ A++ LP   + P + QV+ A++K LDD KR VR+EAV  R  W ++
Sbjct: 968  MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFLL 1025

[Close]

BLAST of Spg014337 vs. ExPASy TrEMBL
Match: A0A0A0K7A1 (MMS19 nucleotide excision repair protein OS=Cucumis sativus OX=3659 GN=Csa_7G452350 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.4e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR+QVLH ISKALDDPKRSVRQEAVRCRQAW+
Sbjct: 1082 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHVISKALDDPKRSVRQEAVRCRQAWA 1138

[Close]

BLAST of Spg014337 vs. ExPASy TrEMBL
Match: A0A6J1JY03 (MMS19 nucleotide excision repair protein OS=Cucurbita maxima OX=3661 GN=LOC111488523 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR QVLHAISKALDDPKR+VRQEAVRCRQAW+
Sbjct: 1079 MMLVRETAIQCLVAVSELPHARIYPMRMQVLHAISKALDDPKRAVRQEAVRCRQAWA 1135

[Close]

BLAST of Spg014337 vs. ExPASy TrEMBL
Match: A0A6J1JWJ7 (MMS19 nucleotide excision repair protein OS=Cucurbita maxima OX=3661 GN=LOC111488523 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR QVLHAISKALDDPKR+VRQEAVRCRQAW+
Sbjct: 1035 MMLVRETAIQCLVAVSELPHARIYPMRMQVLHAISKALDDPKRAVRQEAVRCRQAWA 1091

[Close]

BLAST of Spg014337 vs. ExPASy TrEMBL
Match: A0A6J1JNP3 (MMS19 nucleotide excision repair protein OS=Cucurbita maxima OX=3661 GN=LOC111488523 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.4e-21
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR QVLHAISKALDDPKR+VRQEAVRCRQAW+
Sbjct: 1083 MMLVRETAIQCLVAVSELPHARIYPMRMQVLHAISKALDDPKRAVRQEAVRCRQAWA 1139

[Close]

BLAST of Spg014337 vs. ExPASy TrEMBL
Match: A0A1S3CHF7 (MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.7e-21
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            MMLVRETAIQCLVA+SELPHARIYPMR+QVLH ISKALDDPKR+VRQEAVRCRQAW+
Sbjct: 974  MMLVRETAIQCLVAVSELPHARIYPMRRQVLHTISKALDDPKRAVRQEAVRCRQAWA 1030

[Close]

BLAST of Spg014337 vs. TAIR 10
Match: AT5G48120.1 (ARM repeat superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-19
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS 58
            +M+VRET+IQCLVA+ ELPH RIYP R++VL AI K+LDDPKR VR+EA+RCRQAW+
Sbjct: 1069 LMVVRETSIQCLVALLELPHRRIYPFRREVLQAIEKSLDDPKRKVREEAIRCRQAWA 1125

The following BLAST results are available for this feature:

BLAST of Spg014337 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898521.1	6.9e-21	92.98	MMS19 nucleotide excision repair protein homolog isoform X2 [Benincasa hispida]	[more]
XP_038898520.1	6.9e-21	92.98	MMS19 nucleotide excision repair protein homolog isoform X1 [Benincasa hispida]	[more]
XP_038898522.1	6.9e-21	92.98	MMS19 nucleotide excision repair protein homolog isoform X3 [Benincasa hispida]	[more]
XP_004141784.1	9.0e-21	92.98	MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis sativus] >K...	[more]
XP_011659674.1	9.0e-21	92.98	MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis sativus] >X...	[more]

BLAST of Spg014337 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WVF8	2.5e-18	71.93	MMS19 nucleotide excision repair protein homolog OS=Arabidopsis thaliana OX=3702...	[more]
Q6DCF2	2.0e-07	44.83	MMS19 nucleotide excision repair protein homolog OS=Xenopus laevis OX=8355 GN=mm...	[more]
Q0V9L1	2.0e-07	44.83	MMS19 nucleotide excision repair protein homolog OS=Xenopus tropicalis OX=8364 G...	[more]
Q9D071	5.9e-07	44.83	MMS19 nucleotide excision repair protein homolog OS=Mus musculus OX=10090 GN=Mms...	[more]
E1BP36	1.3e-06	44.83	MMS19 nucleotide excision repair protein homolog OS=Bos taurus OX=9913 GN=MMS19 ...	[more]

BLAST of Spg014337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7A1	4.4e-21	92.98	MMS19 nucleotide excision repair protein OS=Cucumis sativus OX=3659 GN=Csa_7G452...	[more]
A0A6J1JY03	7.4e-21	92.98	MMS19 nucleotide excision repair protein OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1JWJ7	7.4e-21	92.98	MMS19 nucleotide excision repair protein OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1JNP3	7.4e-21	92.98	MMS19 nucleotide excision repair protein OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A1S3CHF7	9.7e-21	91.23	MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778...	[more]

BLAST of Spg014337 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48120.1	1.8e-19	71.93	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 3..60 e-value: 1.6E-6 score: 30.2
IPR039920	DNA repair/transcription protein MET18/MMS19	PANTHER	PTHR12891	DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19	coord: 2..56
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 4..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014337.1	Spg014337.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0097428	protein maturation by iron-sulfur cluster transfer
cellular_component	GO:0097361	CIA complex
cellular_component	GO:0005634	nucleus