Spg014272 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg014272
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein no-on-transient A-like
Locationscaffold3: 44066975 .. 44067316 (-)
RNA-Seq ExpressionSpg014272
SyntenySpg014272
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCGATCAAATCCCTAGTTTCCATGGCTTTCATCGCTCTTCTCTTGTTCTCCGATTCCCTGGCCACTTCCGCCGCCGATCGCGGCGAGCCTTCGAATTCTCTCACCGGAATGCTCCGCCGGAACATCCTTCAGACGGCGGCTCATCGGATTGCTGACAACAACGGCGATTCCTCTTTCGATCGGAAAATGAATGTTCTTATCAAAAAGCGGCTTCGACCTGTAGTAACTGGCACCGGCGGCAGTGGCCGTACATCGGCGGCGAATCGGGGCCGAGCTGCGTCGTTTGGCGTTGGATCTGTGCTGTGTATCTCCATTTTTTTGGGATTGTTCATGTGA

mRNA sequence

ATGGCTGCGATCAAATCCCTAGTTTCCATGGCTTTCATCGCTCTTCTCTTGTTCTCCGATTCCCTGGCCACTTCCGCCGCCGATCGCGGCGAGCCTTCGAATTCTCTCACCGGAATGCTCCGCCGGAACATCCTTCAGACGGCGGCTCATCGGATTGCTGACAACAACGGCGATTCCTCTTTCGATCGGAAAATGAATGTTCTTATCAAAAAGCGGCTTCGACCTGTAGTAACTGGCACCGGCGGCAGTGGCCGTACATCGGCGGCGAATCGGGGCCGAGCTGCGTCGTTTGGCGTTGGATCTGTGCTGTGTATCTCCATTTTTTTGGGATTGTTCATGTGA

Coding sequence (CDS)

ATGGCTGCGATCAAATCCCTAGTTTCCATGGCTTTCATCGCTCTTCTCTTGTTCTCCGATTCCCTGGCCACTTCCGCCGCCGATCGCGGCGAGCCTTCGAATTCTCTCACCGGAATGCTCCGCCGGAACATCCTTCAGACGGCGGCTCATCGGATTGCTGACAACAACGGCGATTCCTCTTTCGATCGGAAAATGAATGTTCTTATCAAAAAGCGGCTTCGACCTGTAGTAACTGGCACCGGCGGCAGTGGCCGTACATCGGCGGCGAATCGGGGCCGAGCTGCGTCGTTTGGCGTTGGATCTGTGCTGTGTATCTCCATTTTTTTGGGATTGTTCATGTGA

Protein sequence

MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGDSSFDRKMNVLIKKRLRPVVTGTGGSGRTSAANRGRAASFGVGSVLCISIFLGLFM
Homology
BLAST of Spg014272 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-27
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGDSS 60
           MAA+KSLVS+A +ALLLFS+SL  SA DR   SNSLTGMLRRN+LQTAAH+IADN+ +SS
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61  FDRKMNVLIKKRLRPVVTGTGGSGRTSAANRGRAASFGVGSVLCISIFLGLFM 114
            +RKMNV IK+R+RPV TGT    R+SAANR R AS GVGSVL   + LGLF+
Sbjct: 61  PERKMNVHIKRRMRPVATGT----RSSAANRSRIASIGVGSVL---VVLGLFL 106

BLAST of Spg014272 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-18
Identity = 66/117 (56.41%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGDSS 60
           MAAIKSL+S++ +ALL FS+SL+TSAA+    SNS+T MLRRNILQTA H IAD+ G   
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEG--- 60

Query: 61  FDRKMNVLIKK----RLRPVVTGTGGSGRTSAANRGRAASFGVGSVLCISIFLGLFM 114
              KMNV IKK    R RP+  GTG   R+SAANR R  SFG+G +L    F GL +
Sbjct: 61  ---KMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLL---FFFGLVL 108

BLAST of Spg014272 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 7.4e-18
Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGDSS 60
           MAAIKSL+ ++ +ALL FS+SL+TSAAD    SNS+TGMLRRN+LQTA H IAD+ G   
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEG--- 60

Query: 61  FDRKMNVLIKK----RLRPVVTGTGGSG-RTSAANRGRAASFGVGSVLCIS 107
              KMNV IK+    R+RPV  GTG +G R SAA+R + ASFG+G +L  S
Sbjct: 61  ---KMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFS 105

BLAST of Spg014272 vs. NCBI nr
Match: KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGDSS 60
           MAAI+ LVS+A +ALL FS+SL T        S+SLTG+  RNIL T AHRI + + +SS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  FDRKMNVL---IKKRLRPV-VTGTGGSGRTSAANRGRAASFGVGSVLCISIFLGLFM 114
           + RK N L    ++R+RP+ ++G+ G    SA NR R ASF VGS+LCI IFLGLF+
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

BLAST of Spg014272 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-15
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAA--HRIADNNGD 60
           MAAIK+L+S+A IALLLF +SL TSAA     S SL G+LRRNI+QT A  H++A     
Sbjct: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVA----- 60

Query: 61  SSFDRKMNVLIKK--RLRPVVTGTGGSGRTSAANRGRAASFGVGSVLCISIFLGLFM 114
              ++K NV IK+  R+RPV+    G  +TSAANR R A  GVGS+LCI + LGLF+
Sbjct: 61  ---EKKFNVHIKRRMRMRPVLI---GRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106

BLAST of Spg014272 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 66/117 (56.41%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGDSS 60
           MAAIKSL+S++ +ALL FS+SL+TSAA+    SNS+T MLRRNILQTA H IAD+ G   
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEG--- 60

Query: 61  FDRKMNVLIKK----RLRPVVTGTGGSGRTSAANRGRAASFGVGSVLCISIFLGLFM 114
              KMNV IKK    R RP+  GTG   R+SAANR R  SFG+G +L    F GL +
Sbjct: 61  ---KMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLL---FFFGLVL 108

BLAST of Spg014272 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.6e-18
Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGDSS 60
           MAAIKSL+ ++ +ALL FS+SL+TSAAD    SNS+TGMLRRN+LQTA H IAD+ G   
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEG--- 60

Query: 61  FDRKMNVLIKK----RLRPVVTGTGGSG-RTSAANRGRAASFGVGSVLCIS 107
              KMNV IK+    R+RPV  GTG +G R SAA+R + ASFG+G +L  S
Sbjct: 61  ---KMNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFS 105

BLAST of Spg014272 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGDSS 60
           MAAI+ LVS+A +ALL FS+SL T        S+SLTG+  RNIL T AHRI + + +SS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  FDRKMNVL---IKKRLRPV-VTGTGGSGRTSAANRGRAASFGVGSVLCISIFLGLFM 114
           + RK N L    ++R+RP+ ++G+ G    SA NR R ASF VGS+LCI IFLGLF+
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

BLAST of Spg014272 vs. ExPASy TrEMBL
Match: A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.4e-11
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGDSS 60
           MAAI+ LVS+A +ALL FS+SL T        S+SLTG+  RNIL T AHRI + + +SS
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  FDRKMNVL---IKKRLRPV-VTGTGGSGRTSAANRGRAASF---------GVGSVLCI 106
           + RK N L    ++R+RP+ ++G+ G    SA NR R ASF          +G V+C+
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEDRHELVRRDIGQVVCL 110

BLAST of Spg014272 vs. ExPASy TrEMBL
Match: A0A0A0K929 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 0

Query: 1   MAAIKSLVSMAFIALLLFSDSLATSAADRGEPSNSLTGMLRRNILQTAAHRIADNNGD-S 60
           MAAI+ L+S+AF+AL  FS+SL T        S+SLTG+  R IL TAAHRI D + + S
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLT--------SHSLTGIPHRTILNTAAHRIVDGSVEYS 60

Query: 61  SFD-RKMNVLIKKRLRP------VVTGTGGSGRTSAANR-GRAASFGVGSVLCISIFLGL 114
           S+  RK N L  K +R       +V+ + G+   SAANR    AS  VGS+LCI IFLGL
Sbjct: 61  SYQIRKSNKLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGL 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575859.13.0e-2768.14hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN44886.12.5e-1856.41hypothetical protein Csa_015765 [Cucumis sativus][more]
KAA0068047.17.4e-1857.66protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no... [more]
KAA0046715.11.1e-1652.14E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3... [more]
KAG6593163.14.5e-1553.85hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAQ71.2e-1856.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1[more]
A0A5A7VLE53.6e-1857.66Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3D3Y65.2e-1752.14E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3BT539.4e-1144.07E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P... [more]
A0A0A0K9291.2e-1048.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg014272.1Spg014272.1mRNA