Spg014218 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg014218
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionstress-associated endoplasmic reticulum protein 2-like
Locationscaffold3: 38259571 .. 38262007 (-)
RNA-Seq ExpressionSpg014218
SyntenySpg014218
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGCCATTAAGTCGAAGTATTTAATTCCCAGAATTACCAAATCGAAGGATCAAATTAATATTCAATCTGTTTGGATCAGAGCGGTGACCGGAGAGAAGACTCGCCGGCCGGCCAGGAGGAGGATCGATCACTGCAAATTCTTCTAATCTCTCCTGCTGCTATCCTGTCTCCGGCTACCATAATTTCCTGCTAAAATCATGGTAATTTTCTTTCCCCTTTTAGATTTGTAATTGCGAATGATTTTTGTTCTTGGTTCTGGATCTCTGATTCGTGATATCAATATTTGATCCTAAGTTGGATCTTTGAATTCTTTCGTCTTGCATTTTTTGTTGATTGTGATCTTTTTTCTGTTTTCTTTACCGAGAATTCGGTTTGAATCTGATCTGTTTTGCCACAGTAGGCTTTTCTTTTCTTTTTTGTGGTATGACTGTTGGCTAATTGCCTTTGATTGCATTTCATTCTGAAATTGAGTGATTGAATGTTTGTGTTTGTGGTCTCTAGACATTTATGACATGAGTAGTTTGTAATTTGGAACAAATGATAGCCTTTGGTTGGGCAATCTCTTAAAGGTCATTGAATTCATCATCGTTGACCTAAATCTCTTAACGAAACCTAATTGAGAAGATTTATAAGAATAGAGCAAAAATGAAACGTAGATTTGTAGCGGGAACACTTAGGATAGTAAAGAAGAATAATGGACATTCAAATGTTAATCCTGTCTCCTTTATTCTAATTTATGTTGTGTAAATGAACTTTTATCAGAAGAATAATCAGAAATTAGTATTCCCACTTAGGCTATTAATTTAAGTTGATTGATTGTTGTTTTCCAAAGTTTCAATTTTAAAATTTAGACCATGTTATCCTGAGATATTGGGTTGACAATTGACAAATGGCAAGGGCATTGTTTAGAATGGAAAAAAATTGAGCTTTTGTAACCATTTCATTTTGTCCCAAATTGTTACTGCTGCTGAAATGCACTATATACTATATAGCAAATGTTGATATTTTGAGCTGCCTTTATGAACATTACTCGGTAAACTTAACCTTCTGTTTTTCTAGACAACATCGAGGCGTCTTGCAGACCGGAAGGTGGTGAGGTTTGAGAGGAATATCACAAAAAGAGGAGCTGTTCCAGAGACGAATGTTAAGAAGGGGAAGGAGTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTTGTTGTCATTGGATCATGTAAGACTAATCCTTTTAGTGTTTATATCATTTAAGTTTTTGCTTCATCAGATAGATAATTGTTGTGGCTACCTTCCTATGAAGTATGAATTAAGTGTACAAGTCTTAGTTCTAGGAGTATGGGGCGGCCAAGAACAGACGGGATTCAAAATAGTATATTATAGAAAGATTTTCTAGTTTTTCTCTAACTTGACCCTTTTATTTTATTATTATTATGATTATTATTATTATTATTATTATTAGTATTTTTTGAGTTCAGACTTCAGACCCTTTTAATTTTTAAAACTGAAAGATCTTAGATGAGTTAGAATTTTTATGTTTTTCCCTCACCCAGTTGAGTTGTTGATGGTGCATTCAGTATGCTCTTTCAGTATTCATCTCCGGAGCTGGTCAGATGCTTCAATCATTCGTACATATTCCATCACTTTCCTCTTTTCCATGTCCATGTTCCAAGTTCATAGGTCTATTATTTTATTTGTCTTCCCCTCACATGTTAAAACAAGGGCGGTCTCCCCTGGACCTTATTCCGTCCAAGCTCTCAGAGCATTTGTCTTTCTTCCTTATCTGCTACACGTCTGTATTATGCTTTTAAGTAAAATTTTGCCCCTCCTTAGCATAGAGTCCTGGTCTTAGGATCTGATTTTCCTCCCATTCTATCATAATTGATTAGCATAGTTTTCTGTTCCCTATACGAGGGAATATGTTCAAGGGACGGTGAACAGGTGTGGTAGGGTTAAGCGGAGGACACTCATGGATGTAAAAGTAAAAGTAAAACTCAAACTCGTTAAGATTCAAATCTTATGGCTTTTTTATGTTAGATTTGTTTCAACTCAAGACAGAATTTATTCATCTTGTCCTGCAATATGTGGGATGAATTATCTATAGGAGATCATGGTTCTACCTACCTCATCACCCTAGAACAACCACCTTCATTACTTCATTACCATTTTTCTTTTACTATGACTATCAGCTGTTAGAAATAACCACTGGATATCAATTGAATATCTGTCTCTAACTGAAGTTGCTCGCGGGTGCGGCATCGTTTTGATCACAATCCTAAAAACGAGTGAACTTGCTGTGTATTCAAGGTATTGTATTGTTACTGATCATTGTCTGTTCAACAGCTCTCTTCCAGATAATCAGGACAGCAACAAGCGGAGGCATGGCTTGAGATGGTGTTACAGTTTGATCTTGGTCCTCCCTTTCTTAGGCTGTAA

mRNA sequence

ATGCCAGCCATTAAGTCGAAGTATTTAATTCCCAGAATTACCAAATCGAAGGATCAAATTAATATTCAATCTGTTTGGATCAGAGCGACAACATCGAGGCGTCTTGCAGACCGGAAGGTGGTGAGGTTTGAGAGGAATATCACAAAAAGAGGAGCTGTTCCAGAGACGAATGTTAAGAAGGGGAAGGAGTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTTGTTGTCATTGGATCATGA

Coding sequence (CDS)

ATGCCAGCCATTAAGTCGAAGTATTTAATTCCCAGAATTACCAAATCGAAGGATCAAATTAATATTCAATCTGTTTGGATCAGAGCGACAACATCGAGGCGTCTTGCAGACCGGAAGGTGGTGAGGTTTGAGAGGAATATCACAAAAAGAGGAGCTGTTCCAGAGACGAATGTTAAGAAGGGGAAGGAGTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTTGTTGTCATTGGATCATGA

Protein sequence

MPAIKSKYLIPRITKSKDQINIQSVWIRATTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS
Homology
[Close]
BLAST of Spg014218 vs. NCBI nr
Match: XP_022155455.1 (stress-associated endoplasmic reticulum protein 2-like [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 5.3e-18
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 30 TTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 82
          TTSRRLADRKVVRFERNITKRGAVPET VKKGK+YPVGPLLLGFF+FVVIGS
Sbjct: 2  TTSRRLADRKVVRFERNITKRGAVPETTVKKGKDYPVGPLLLGFFVFVVIGS 53

[Close]
BLAST of Spg014218 vs. NCBI nr
Match: KHG05378.1 (Stress-associated endoplasmic reticulum 2 [Gossypium arboreum])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 22 IQSVWIRATTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 81
          I  +W   TTSRRLADRKV++FE+NITKRGAVPET+ KKGK+YPVGP+LLGFF+FVVIGS
Sbjct: 19 IPLIWFVQTTSRRLADRKVLKFEKNITKRGAVPETSTKKGKDYPVGPMLLGFFVFVVIGS 78

[Close]
BLAST of Spg014218 vs. NCBI nr
Match: PPS13153.1 (hypothetical protein GOBAR_AA07493 [Gossypium barbadense])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 22 IQSVWIRATTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 81
          I  +W   TTSRRLADRKV++FE+NITKRGAVPET+ KKGK+YPVGP+LLGFF+FVVIGS
Sbjct: 15 IPLIWFVQTTSRRLADRKVLKFEKNITKRGAVPETSTKKGKDYPVGPMLLGFFVFVVIGS 74

[Close]
BLAST of Spg014218 vs. NCBI nr
Match: MBA0676912.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 22 IQSVWIRATTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 81
          I  +W   TTSRRLADRKV++FE+NITKRGAVPET+ KKGK+YPVGP+LLGFF+FVVIGS
Sbjct: 15 IPLIWFVQTTSRRLADRKVLKFEKNITKRGAVPETSTKKGKDYPVGPMLLGFFVFVVIGS 74

[Close]
BLAST of Spg014218 vs. NCBI nr
Match: XP_038907144.1 (stress-associated endoplasmic reticulum protein 2-like [Benincasa hispida])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 30 TTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 82
          TTSRRLADRKV RFERNITKRGAVP+T++KKGKEYPVGPLLLGFFIFVVIGS
Sbjct: 2  TTSRRLADRKVGRFERNITKRGAVPDTSIKKGKEYPVGPLLLGFFIFVVIGS 53

[Close]
BLAST of Spg014218 vs. ExPASy TrEMBL
Match: A0A6J1DMG9 (stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX=3673 GN=LOC111022594 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 30 TTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 82
          TTSRRLADRKVVRFERNITKRGAVPET VKKGK+YPVGPLLLGFF+FVVIGS
Sbjct: 2  TTSRRLADRKVVRFERNITKRGAVPETTVKKGKDYPVGPLLLGFFVFVVIGS 53

[Close]
BLAST of Spg014218 vs. ExPASy TrEMBL
Match: A0A0B0MTG2 (Stress-associated endoplasmic reticulum 2 OS=Gossypium arboreum OX=29729 GN=F383_31504 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.7e-18
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 22 IQSVWIRATTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 81
          I  +W   TTSRRLADRKV++FE+NITKRGAVPET+ KKGK+YPVGP+LLGFF+FVVIGS
Sbjct: 19 IPLIWFVQTTSRRLADRKVLKFEKNITKRGAVPETSTKKGKDYPVGPMLLGFFVFVVIGS 78

[Close]
BLAST of Spg014218 vs. ExPASy TrEMBL
Match: A0A2P5YC23 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07493 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.7e-18
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 22 IQSVWIRATTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 81
          I  +W   TTSRRLADRKV++FE+NITKRGAVPET+ KKGK+YPVGP+LLGFF+FVVIGS
Sbjct: 15 IPLIWFVQTTSRRLADRKVLKFEKNITKRGAVPETSTKKGKDYPVGPMLLGFFVFVVIGS 74

[Close]
BLAST of Spg014218 vs. ExPASy TrEMBL
Match: A0A7J8WPS7 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_018353 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.7e-18
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 22 IQSVWIRATTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 81
          I  +W   TTSRRLADRKV++FE+NITKRGAVPET+ KKGK+YPVGP+LLGFF+FVVIGS
Sbjct: 15 IPLIWFVQTTSRRLADRKVLKFEKNITKRGAVPETSTKKGKDYPVGPMLLGFFVFVVIGS 74

[Close]
BLAST of Spg014218 vs. ExPASy TrEMBL
Match: A0A068UY54 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038257001 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 16  SKDQINIQSVWIRATTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFI 75
           SK   +I++ ++R TTSRRLADRKV +FE+NIT+RGAVPET+ KKG  YPVGP+LLGFF+
Sbjct: 38  SKGSYDIRANFVRQTTSRRLADRKVEKFEKNITRRGAVPETSTKKGSNYPVGPILLGFFV 97

Query: 76  FVVIGS 82
           FVVIGS
Sbjct: 98  FVVIGS 103

[Close]
BLAST of Spg014218 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 86.7 bits (213), Expect = 9.6e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 30 TTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 82
          TTS+RLADRK+ +F++NI KRG VPET  KKGK+YPVGP+LLGFF+FVVIGS
Sbjct: 2  TTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGS 53

[Close]
BLAST of Spg014218 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 86.7 bits (213), Expect = 9.6e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 30 TTSRRLADRKVVRFERNITKRGAVPETNVKKGKEYPVGPLLLGFFIFVVIGS 82
          TTS+RLADRK+ +F++NI KRG VPET  KKGK+YPVGP+LLGFF+FVVIGS
Sbjct: 2  TTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGS 53

The following BLAST results are available for this feature:
BLAST of Spg014218 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155455.15.3e-1894.23stress-associated endoplasmic reticulum protein 2-like [Momordica charantia][more]
KHG05378.11.2e-1776.67Stress-associated endoplasmic reticulum 2 [Gossypium arboreum][more]
PPS13153.11.2e-1776.67hypothetical protein GOBAR_AA07493 [Gossypium barbadense][more]
MBA0676912.11.2e-1776.67hypothetical protein [Gossypium aridum][more]
XP_038907144.12.6e-1792.31stress-associated endoplasmic reticulum protein 2-like [Benincasa hispida][more]
BLAST of Spg014218 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg014218 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DMG92.6e-1894.23stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX... [more]
A0A0B0MTG25.7e-1876.67Stress-associated endoplasmic reticulum 2 OS=Gossypium arboreum OX=29729 GN=F383... [more]
A0A2P5YC235.7e-1876.67Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07493 PE=3 SV... [more]
A0A7J8WPS75.7e-1876.67Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_018353 PE=3 SV=1[more]
A0A068UY542.2e-1769.70Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00038257001 PE=3 ... [more]
BLAST of Spg014218 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G27350.19.6e-1875.00Ribosome associated membrane protein RAMP4 [more]
AT1G27330.19.6e-1875.00Ribosome associated membrane protein RAMP4 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010580Stress-associated endoplasmic reticulum proteinPFAMPF06624RAMP4coord: 33..81
e-value: 1.3E-17
score: 63.5
IPR010580Stress-associated endoplasmic reticulum proteinPANTHERPTHR15601STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4coord: 30..81
NoneNo IPR availablePANTHERPTHR15601:SF23OS11G0637501 PROTEINcoord: 30..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg014218.1Spg014218.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0006486 protein glycosylation
biological_process GO:0015031 protein transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding