Spg013963 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013963
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	classical arabinogalactan protein 26
Location	scaffold3: 43974748 .. 43975152 (+)
RNA-Seq Expression	Spg013963
Synteny	Spg013963

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGTTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTCCCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTCCCCTCCTTTCTTCCATCTCCGCCGCGCCGGAATTTTCCCCGTCTCCCTCGCCGTCGCCGGACATTTTTCCGCTCTTTCCGACGCCCGGCGGTGCCGCCCTTACGCCGTCCTCCTTGCCGACCATCCCCTCCAGCCCCAGCCCTCCCAACCCGGATTCTACGGTTGCCGCGCCCGCGCCGGAGCTGCCTCTTCCGCCGTCTCAGTCCTTGCCGTTCTCTGCTGCTGCTCCTCTCAACTCCGGTCGGTGGTGTTGGCCTGTTTTGGTGGCTCTCACGGCGGTTTCTTTCGCGGCGGAGCTCTGCCGGTGA

mRNA sequence

ATGGCTTCCGTTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTCCCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTCCCCTCCTTTCTTCCATCTCCGCCGCGCCGGAATTTTCCCCGTCTCCCTCGCCGTCGCCGGACATTTTTCCGCTCTTTCCGACGCCCGGCGGTGCCGCCCTTACGCCGTCCTCCTTGCCGACCATCCCCTCCAGCCCCAGCCCTCCCAACCCGGATTCTACGGTTGCCGCGCCCGCGCCGGAGCTGCCTCTTCCGCCGTCTCAGTCCTTGCCGTTCTCTGCTGCTGCTCCTCTCAACTCCGGTCGGTGGTGTTGGCCTGTTTTGGTGGCTCTCACGGCGGTTTCTTTCGCGGCGGAGCTCTGCCGGTGA

Coding sequence (CDS)

ATGGCTTCCGTTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTCCCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTCCCCTCCTTTCTTCCATCTCCGCCGCGCCGGAATTTTCCCCGTCTCCCTCGCCGTCGCCGGACATTTTTCCGCTCTTTCCGACGCCCGGCGGTGCCGCCCTTACGCCGTCCTCCTTGCCGACCATCCCCTCCAGCCCCAGCCCTCCCAACCCGGATTCTACGGTTGCCGCGCCCGCGCCGGAGCTGCCTCTTCCGCCGTCTCAGTCCTTGCCGTTCTCTGCTGCTGCTCCTCTCAACTCCGGTCGGTGGTGTTGGCCTGTTTTGGTGGCTCTCACGGCGGTTTCTTTCGCGGCGGAGCTCTGCCGGTGA

Protein sequence

MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSPDIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

Homology

[Close]

BLAST of Spg013963 vs. NCBI nr
Match: XP_023548939.1 (classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 5.6e-49
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLF 60
           MAS+FSLYIPIFMAYTASIFPFSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWP 120
           PTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPPSQSLPFSA A LNSG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 135
           + VALTA +  AE+CR
Sbjct: 121 IWVALTA-AIVAEVCR 135

[Close]

BLAST of Spg013963 vs. NCBI nr
Match: KAG6575865.1 (hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.8 bits (517), Expect = 9.6e-49
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLF 60
           MAS+FSLYIPIFMAYTASI PFSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWP 120
           PTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPPSQSLPFSAAA LNSG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 135
           + VALTA +  AE+CR
Sbjct: 121 IWVALTA-AIVAEVCR 135

[Close]

BLAST of Spg013963 vs. NCBI nr
Match: XP_022953817.1 (classical arabinogalactan protein 26 [Cucurbita moschata])

HSP 1 Score: 203.8 bits (517), Expect = 9.6e-49
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLF 60
           MAS+FSLYIPIFMAYTASI PFSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLF 60

Query: 61  PTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWP 120
           PTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPPSQSLPFSAAA LNSG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 135
           + VALTA +  AE+CR
Sbjct: 121 IWVALTA-AIVAEVCR 135

[Close]

BLAST of Spg013963 vs. NCBI nr
Match: XP_022991733.1 (classical arabinogalactan protein 26 [Cucurbita maxima])

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-47
Identity = 111/136 (81.62%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLF 60
           MAS+FSLYIPIFMAYTASIF FSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFAFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWP 120
           PTPGGA L PSSLPTIPSSPSPPNPD   A PAPE+PLPPSQSLPFSAAA LNSG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDATPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 135
           + VALTA +   E+CR
Sbjct: 121 IWVALTA-AIVEEVCR 135

[Close]

BLAST of Spg013963 vs. NCBI nr
Match: XP_038876736.1 (classical arabinogalactan protein 26-like [Benincasa hispida])

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-44
Identity = 109/138 (78.99%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP----DIFP 60
           MAS+FSLYIPIFMAYTASI PFS ASYPNY P L+SSISAAPEFSP PSPSP    DI P
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSLASYPNYSPTLISSISAAPEFSPFPSPSPSPASDISP 60

Query: 61  LFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWC 120
           LFPTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+ LPPSQSLPFSAA  LN   WC
Sbjct: 61  LFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMSLPPSQSLPFSAAVSLNFDGWC 120

Query: 121 WPVLVALTAVSFAAELCR 135
           WPVLVALT  + A ELCR
Sbjct: 121 WPVLVALT-TALAVELCR 137

[Close]

BLAST of Spg013963 vs. ExPASy Swiss-Prot
Match: Q94F57 (Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 8.0e-06
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 35  LSSISAAPEFSP---------SPSPSPDIFPLFPTPGGAALTPSS-----LPTIPSSPSP 94
           LS+ISAAP F P         +P+ SPD  PLFPTPG + ++PS      +PTIPSS SP
Sbjct: 25  LSTISAAPSFLPEAPSSFSASTPAMSPDTSPLFPTPGSSEMSPSPSESSIMPTIPSSLSP 84

Query: 95  PNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWPVLVAL 124
           PNPD+    P  E+  P    LP S++  L S +    +LV L
Sbjct: 85  PNPDAVTPDPLLEVS-PVGSPLPASSSVCLVSSQLSSLLLVLL 126

[Close]

BLAST of Spg013963 vs. ExPASy TrEMBL
Match: A0A6J1GPB2 (classical arabinogalactan protein 26 OS=Cucurbita moschata OX=3662 GN=LOC111456234 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.6e-49
Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLF 60
           MAS+FSLYIPIFMAYTASI PFSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLF 60

Query: 61  PTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWP 120
           PTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPPSQSLPFSAAA LNSG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 135
           + VALTA +  AE+CR
Sbjct: 121 IWVALTA-AIVAEVCR 135

[Close]

BLAST of Spg013963 vs. ExPASy TrEMBL
Match: A0A6J1JX46 (classical arabinogalactan protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111488263 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.8e-48
Identity = 111/136 (81.62%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLF 60
           MAS+FSLYIPIFMAYTASIF FSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLF
Sbjct: 1   MASIFSLYIPIFMAYTASIFAFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWP 120
           PTPGGA L PSSLPTIPSSPSPPNPD   A PAPE+PLPPSQSLPFSAAA LNSG WCW 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDATPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAVSFAAELCR 135
           + VALTA +   E+CR
Sbjct: 121 IWVALTA-AIVEEVCR 135

[Close]

BLAST of Spg013963 vs. ExPASy TrEMBL
Match: A0A0A0K510 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.4e-42
Identity = 105/135 (77.78%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPP-LLSSISAAPEFSPSPSPSPDIFPLFP 60
           MAS+FSLYIPIFMAYTAS+FPFSFASYPN FP  L+SSISAAPEFSPSP+P+ DI PLFP
Sbjct: 1   MASIFSLYIPIFMAYTASVFPFSFASYPNDFPTHLISSISAAPEFSPSPAPASDISPLFP 60

Query: 61  TPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWPV 120
           TPG A L PSSLPTIPSSPSPPNPD   AAPAPE+PL PSQSLPFS AA LNSG WC  V
Sbjct: 61  TPGDATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSPSQSLPFSTAAALNSGGWCCSV 120

Query: 121 LVALTAVSFAAELCR 135
            VALT  +  AEL R
Sbjct: 121 FVALT-TTLVAELRR 134

[Close]

BLAST of Spg013963 vs. ExPASy TrEMBL
Match: A0A5A7UQZ3 (Classical arabinogalactan protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002010 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 99/138 (71.74%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPP----LLSSISAAPEFSPSPSPSPDIFP 60
           MAS+FSLYIPIFMAYTAS FPF+FASYPNYFP     + SSISAAPEFSP+P+PS DI P
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60

Query: 61  LFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWC 120
           LFPTPG A L PSSLPTIPSSPSPPNPD    APAPE+PL P+ S+PFSAAA LNS  WC
Sbjct: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120

Query: 121 WPVLVALTAVSFAAELCR 135
             V +AL   + AAEL R
Sbjct: 121 CSVFLAL-MTALAAELHR 137

[Close]

BLAST of Spg013963 vs. ExPASy TrEMBL
Match: A0A1S3BRG9 (classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 99/138 (71.74%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 1   MASVFSLYIPIFMAYTASIFPFSFASYPNYFPP----LLSSISAAPEFSPSPSPSPDIFP 60
           MAS+FSLYIPIFMAYTAS FPF+FASYPNYFP     + SSISAAPEFSP+P+PS DI P
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFSPAPAPSSDISP 60

Query: 61  LFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWC 120
           LFPTPG A L PSSLPTIPSSPSPPNPD    APAPE+PL P+ S+PFSAAA LNS  WC
Sbjct: 61  LFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVGWC 120

Query: 121 WPVLVALTAVSFAAELCR 135
             V +AL   + AAEL R
Sbjct: 121 CSVFLAL-MTALAAELHR 137

[Close]

BLAST of Spg013963 vs. TAIR 10
Match: AT2G47930.1 (arabinogalactan protein 26 )

HSP 1 Score: 51.6 bits (122), Expect = 5.7e-07
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 35  LSSISAAPEFSP---------SPSPSPDIFPLFPTPGGAALTPSS-----LPTIPSSPSP 94
           LS+ISAAP F P         +P+ SPD  PLFPTPG + ++PS      +PTIPSS SP
Sbjct: 25  LSTISAAPSFLPEAPSSFSASTPAMSPDTSPLFPTPGSSEMSPSPSESSIMPTIPSSLSP 84

Query: 95  PNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWPVLVAL 124
           PNPD+    P  E+  P    LP S++  L S +    +LV L
Sbjct: 85  PNPDAVTPDPLLEVS-PVGSPLPASSSVCLVSSQLSSLLLVLL 126

The following BLAST results are available for this feature:

BLAST of Spg013963 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548939.1	5.6e-49	83.09	classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]	[more]
KAG6575865.1	9.6e-49	83.09	hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953817.1	9.6e-49	83.09	classical arabinogalactan protein 26 [Cucurbita moschata]	[more]
XP_022991733.1	1.8e-47	81.62	classical arabinogalactan protein 26 [Cucurbita maxima]	[more]
XP_038876736.1	1.4e-44	78.99	classical arabinogalactan protein 26-like [Benincasa hispida]	[more]

BLAST of Spg013963 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F57	8.0e-06	43.69	Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE...	[more]

BLAST of Spg013963 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPB2	4.6e-49	83.09	classical arabinogalactan protein 26 OS=Cucurbita moschata OX=3662 GN=LOC1114562...	[more]
A0A6J1JX46	8.8e-48	81.62	classical arabinogalactan protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111488263...	[more]
A0A0A0K510	9.4e-42	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1	[more]
A0A5A7UQZ3	3.7e-38	71.74	Classical arabinogalactan protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BRG9	3.7e-38	71.74	classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=...	[more]

BLAST of Spg013963 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47930.1	5.7e-07	43.69	arabinogalactan protein 26	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..94
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013963.1	Spg013963.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane