Spg013960 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013960
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Adenine DNA glycosylase
Location	scaffold3: 41365399 .. 41368404 (+)
RNA-Seq Expression	Spg013960
Synteny	Spg013960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCAAGCTGCTCAACATGCCCTGTATTTGATCACTGCAAGGCCCTTTCGATCTCAAAGCATGATAGTTCAGTTCTTGTCACAGATTATCCCGCTAAGGGGATAAAGACCAAACAAAGACATGATTATTCTGCTGTATGTGTGGTTGAGATATTGGAAAATCAGGGCACATCTGAGTTAGAGCAATCTAGTAGATTTCTTCTTGTAAAGAGACCCGATGAAGGTTTGCTTGCTGGTCTATGGGAATTCCCATCTGTTTTGTTGGATGGAGAAGCTGATTTAAGTACAAGGAGAGAATCCATTAATAACCTCTTGAGTCAATGCTTTGGACTTGAACCAAAAAAGAATTTTGAAATAGTTATTAGAGAAGATGTTGGAGATTTTGTCCATGTTTTCACACACATCCGTCTCAAGATATATGTTGAACACTTGGTGTTATGTTTAAAAGGTTCGAGTTACTTTCTCCTTTCATCCCTATCTGTGCATTGAATATACATAAACTCAGTGACTAGAAACTTCCGACAAAACTTAACCCATATGAGATTTAATTATCTTATAGGCTGTCAAACATCGTATGTATGTTAAATATTTATTTCTTCCATGTCGTCTTTCACCGATGATTTATTTTCAATTGTCATAGATGGAAAACTATCACTGAAACTGGTCTATGAGGCAAACCATCAAATAAAGTTCAGACTTTTGAAACATTACTCTGTATAATTTTAAGCTTTCAAATTCCAATTATCATTTTAGTTTAGGATTCAGTTAGTATTTTGAATTTCTCATTGACTGCCCTCTCAGATTTGTTTTGTACTGCTTCTTTATTAATGCCTATTGTGCTAATTTTTCTGTGGGCTCCCTTGGCTTCAATGGGATATCTTATACTTTTCTCCCTTCGCAATTTTATTTTTTCCAATGAAGTTTCTGTTCCCTATACACACATAAAATAGGAATAAATAACCTCTTAAATTTACATTCTATTCACCATCGAAATAAATTCTTATTCTGTTTATGTAAGTGTTTGAAACTTCATGGCTCTGAACCATCGCTAGTGTAACAAAGGAGCACTTGATGGTTTATTGTTCATAGAATTGCGGTTACACTGTGTTTAAATTGCCTGAAACAAAACATCACTTAGTCCTTAGTATTCGGCTGCAACACCTATACTCAATCTGGAGTCAGACAAGGGTATGAAGTGATTTTCATTTTTCCTACTAATATTTTATCTTTCCTTGACTGTTGCATTTGCGACATGTAATATCTTATTGTTAAATACACTTGAATTTTTTAATAAATGGAATAAGTCATTGTGATTTAGTATGGCAAACCATGTTGATCTGAATTATAATTTACATTATAAATTGATTTCAACGGCATTTATTAGGTGTAAAATGATTCTATTTTCATATTTATAGTAAATGGTATTGTTGATGTCTAAAATTTTATTCTAGCACAATAAATTGCTCTACTGCCGAGCAGGTGTCTAGTTATTTATCAATCTTTTTAATTTTTACTGTCGTTGATTCTTAGTAATTAGTCATCCTCGTAGATCATTTTGAAGCATTTCAAGCTGATAATAATGAAAGCTGCTTACATTTACTTGGAATTGGTTTTCATCAGTTTTCCTGAATCTTATGCTGTAGATAGGCGTGTTTTCTGTGACTATGCGAAGTACTTTGCTCATCAAAGGCCATGGGACATGACTATGGAAAAAACAGTTCTTTTTGGAAATTTGTGAATCATAGTCCTGTTTTTCCATTTCAGTAAATTTACTTCACATATTTATATGTTCTTAAAGGTGAAGGTAGCAAGTTGTTCCGGAGACGGGAGAAGAAATCTACATTATGGAAATGTGTGGACAACAAGGTTATGTCAACCATGGGATTGACGTCCAGTGTGAGGAAGGTAAGCACAGATGGTGCATTAGATGACTTCTCATTGTGTTCCTTTATTTTTACTTTCATAAATATCTAATTCAACGGTTTTATTTTCATCTACTTAAAATCTTAATCTATCTATACAATCCGGCATCGTTAAATTTGGAAGAAAGTTCTTTCAGATTTCTTAGTACCAAAATTTATGTACCAACCCAGATTCGATGCAGAGTAAACAGAGATTTGATATTTGTAACTGCAAGTTTTGATGAGAGTCGAGCATAATATGAAATATCTTCTTGCTGTCCCATGGGGACATAATTATAAACCGTATGATTCTAGTAAATGCTGGTACCAGAACTATATACTGTCACTTTTTTTTCCCTTTTTTCTTGGGCACGTCGTTGATTGGGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGTCCGAGAAAGGTATTAGAGTTTAGGGTTATACTGGATGTTTGAGCTTCAATTAGCAACATCTAGCAGATTATAAAATCTGAATATCAACTTTATTCAAGGAAAATTTAAATTTCCTTGAACATCCATATCAGTTTAGTTATCGAATGTGGGTTGTTCATAAGAGAGAATTGTTTTTTTATCATGGAAATGTGTGATAAGACAATGAGTTATTAGCAACTAATTTGACAACTTTCTGACAGGCCTATGCCATGGTCGAGAAATTTCAGGCAGAGAAGACATGTTCTAGCCGTGCACTAGCCCGAAAAAGACAGAGAGTTACTTCAACAAGCTTGAAGTAAAATAGAAGGGAAAATTCGTGGGGAGAGTTATGGTTTGATTTCTCCTTGATAGATAAGAGTTGGATAAATAGATACTGTTGAGTAGCAAAATGTTCAAGAATGTATCCACTCAGAATTCGTACACCAAAATATTTGACTGCACCGGAATTTGGAGGAATGTACTCAAGCCAGTGGCTATTCAAGGCGCACATGGAATTTACTCTTGTTGAAGGGTGGCTGTTGATGGATGTGGTGATGCTCTAAGAGAACATGGAGCTTCATCCAATATTGTTTTAAACATGGAGTTTGATTCCAATGAGCAAATGGAAGCTTCAGTGGATTTTCTGAACTTTATCATTTGA

mRNA sequence

ATGAGCCCAAGCTGCTCAACATGCCCTGTATTTGATCACTGCAAGGCCCTTTCGATCTCAAAGCATGATAGTTCAGTTCTTGTCACAGATTATCCCGCTAAGGGGATAAAGACCAAACAAAGACATGATTATTCTGCTGTATGTGTGGTTGAGATATTGGAAAATCAGGGCACATCTGAGTTAGAGCAATCTAGTAGATTTCTTCTTGTAAAGAGACCCGATGAAGGTTTGCTTGCTGGTCTATGGGAATTCCCATCTGTTTTGTTGGATGGAGAAGCTGATTTAAGTACAAGGAGAGAATCCATTAATAACCTCTTGAGTCAATGCTTTGGACTTGAACCAAAAAAGAATTTTGAAATAGTTATTAGAGAAGATGTTGGAGATTTTGTCCATGTTTTCACACACATCCGTCTCAAGATATATGTTGAACACTTGGTGTTATGTTTAAAAGGCGTGTTTTCTGTGACTATGCGAAGTGAAGGTAGCAAGTTGTTCCGGAGACGGGAGAAGAAATCTACATTATGGAAATGTGTGGACAACAAGGTTATGTCAACCATGGGATTGACGTCCAGTGTGAGGAAGGCCTATGCCATGGTCGAGAAATTTCAGGCAGAGAAGACATGTTCTAGCCGTGCACTAGCCCGAAAAAGACAGAGAGTTACTTCAACAAGCTTGAAGGTGGCTGTTGATGGATGTGGTGATGCTCTAAGAGAACATGGAGCTTCATCCAATATTGTTTTAAACATGGAGTTTGATTCCAATGAGCAAATGGAAGCTTCAGTGGATTTTCTGAACTTTATCATTTGA

Coding sequence (CDS)

ATGAGCCCAAGCTGCTCAACATGCCCTGTATTTGATCACTGCAAGGCCCTTTCGATCTCAAAGCATGATAGTTCAGTTCTTGTCACAGATTATCCCGCTAAGGGGATAAAGACCAAACAAAGACATGATTATTCTGCTGTATGTGTGGTTGAGATATTGGAAAATCAGGGCACATCTGAGTTAGAGCAATCTAGTAGATTTCTTCTTGTAAAGAGACCCGATGAAGGTTTGCTTGCTGGTCTATGGGAATTCCCATCTGTTTTGTTGGATGGAGAAGCTGATTTAAGTACAAGGAGAGAATCCATTAATAACCTCTTGAGTCAATGCTTTGGACTTGAACCAAAAAAGAATTTTGAAATAGTTATTAGAGAAGATGTTGGAGATTTTGTCCATGTTTTCACACACATCCGTCTCAAGATATATGTTGAACACTTGGTGTTATGTTTAAAAGGCGTGTTTTCTGTGACTATGCGAAGTGAAGGTAGCAAGTTGTTCCGGAGACGGGAGAAGAAATCTACATTATGGAAATGTGTGGACAACAAGGTTATGTCAACCATGGGATTGACGTCCAGTGTGAGGAAGGCCTATGCCATGGTCGAGAAATTTCAGGCAGAGAAGACATGTTCTAGCCGTGCACTAGCCCGAAAAAGACAGAGAGTTACTTCAACAAGCTTGAAGGTGGCTGTTGATGGATGTGGTGATGCTCTAAGAGAACATGGAGCTTCATCCAATATTGTTTTAAACATGGAGTTTGATTCCAATGAGCAAATGGAAGCTTCAGTGGATTTTCTGAACTTTATCATTTGA

Protein sequence

MSPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSELEQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIVIREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNKVMSTMGLTSSVRKAYAMVEKFQAEKTCSSRALARKRQRVTSTSLKVAVDGCGDALREHGASSNIVLNMEFDSNEQMEASVDFLNFII

Homology

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BLAST of Spg013960 vs. NCBI nr
Match: XP_038874808.1 (adenine DNA glycosylase isoform X1 [Benincasa hispida])

HSP 1 Score: 365.5 bits (937), Expect = 3.8e-97
Identity = 185/218 (84.86%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           +PSCSTCPVFDHC+ALSISKHD+S+LVTDYPAKGIKTKQRHDYSAVCVVEIL+NQGTSEL
Sbjct: 292 NPSCSTCPVFDHCEALSISKHDNSILVTDYPAKGIKTKQRHDYSAVCVVEILDNQGTSEL 351

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
           EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADL+TRRESIN+ LS+CFGLE KKNFEIV
Sbjct: 352 EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLNTRRESINSHLSKCFGLELKKNFEIV 411

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
           IREDVGDF+HVFTHIRLKIYVEHLVLCLKG        EGS+LF ++EKKS LW+CVDNK
Sbjct: 412 IREDVGDFIHVFTHIRLKIYVEHLVLCLKG--------EGSELFLKQEKKSILWRCVDNK 471

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKTCSSRALARKRQR 220
            MS+MGLTSSVRK YAMVEKFQA+KT SSRAL RK+Q+
Sbjct: 472 AMSSMGLTSSVRKTYAMVEKFQAKKT-SSRALPRKKQK 500

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BLAST of Spg013960 vs. NCBI nr
Match: XP_038874810.1 (adenine DNA glycosylase isoform X3 [Benincasa hispida])

HSP 1 Score: 365.5 bits (937), Expect = 3.8e-97
Identity = 185/218 (84.86%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           +PSCSTCPVFDHC+ALSISKHD+S+LVTDYPAKGIKTKQRHDYSAVCVVEIL+NQGTSEL
Sbjct: 252 NPSCSTCPVFDHCEALSISKHDNSILVTDYPAKGIKTKQRHDYSAVCVVEILDNQGTSEL 311

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
           EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADL+TRRESIN+ LS+CFGLE KKNFEIV
Sbjct: 312 EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLNTRRESINSHLSKCFGLELKKNFEIV 371

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
           IREDVGDF+HVFTHIRLKIYVEHLVLCLKG        EGS+LF ++EKKS LW+CVDNK
Sbjct: 372 IREDVGDFIHVFTHIRLKIYVEHLVLCLKG--------EGSELFLKQEKKSILWRCVDNK 431

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKTCSSRALARKRQR 220
            MS+MGLTSSVRK YAMVEKFQA+KT SSRAL RK+Q+
Sbjct: 432 AMSSMGLTSSVRKTYAMVEKFQAKKT-SSRALPRKKQK 460

[Close]

BLAST of Spg013960 vs. NCBI nr
Match: XP_038874809.1 (adenine DNA glycosylase isoform X2 [Benincasa hispida])

HSP 1 Score: 365.5 bits (937), Expect = 3.8e-97
Identity = 185/218 (84.86%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           +PSCSTCPVFDHC+ALSISKHD+S+LVTDYPAKGIKTKQRHDYSAVCVVEIL+NQGTSEL
Sbjct: 281 NPSCSTCPVFDHCEALSISKHDNSILVTDYPAKGIKTKQRHDYSAVCVVEILDNQGTSEL 340

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
           EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADL+TRRESIN+ LS+CFGLE KKNFEIV
Sbjct: 341 EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLNTRRESINSHLSKCFGLELKKNFEIV 400

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
           IREDVGDF+HVFTHIRLKIYVEHLVLCLKG        EGS+LF ++EKKS LW+CVDNK
Sbjct: 401 IREDVGDFIHVFTHIRLKIYVEHLVLCLKG--------EGSELFLKQEKKSILWRCVDNK 460

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKTCSSRALARKRQR 220
            MS+MGLTSSVRK YAMVEKFQA+KT SSRAL RK+Q+
Sbjct: 461 AMSSMGLTSSVRKTYAMVEKFQAKKT-SSRALPRKKQK 489

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BLAST of Spg013960 vs. NCBI nr
Match: XP_022953220.1 (adenine DNA glycosylase [Cucurbita moschata])

HSP 1 Score: 364.0 bits (933), Expect = 1.1e-96
Identity = 188/224 (83.93%), Postives = 202/224 (90.18%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           SPSCSTCPVFDHC+ALS SK DSSVLVTDYPAKG+KTKQRHDYSAVCVVEILENQGTSEL
Sbjct: 244 SPSCSTCPVFDHCEALSSSKDDSSVLVTDYPAKGVKTKQRHDYSAVCVVEILENQGTSEL 303

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
           +QSSRFLLVKRPDEGLLAGLWEFPSVLL+GEAD STRRESIN+LLS+ FGLEPKKNFEIV
Sbjct: 304 KQSSRFLLVKRPDEGLLAGLWEFPSVLLNGEADSSTRRESINSLLSKSFGLEPKKNFEIV 363

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
           IREDVGDFVHVF+HIRLKIYVEHLVL LKG        EGSKLFR++EKKS  WKCVDNK
Sbjct: 364 IREDVGDFVHVFSHIRLKIYVEHLVLRLKG--------EGSKLFRKQEKKSISWKCVDNK 423

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKTCSSRALARKRQRVTSTSL 226
           VMS+MGLTSSVRK YAMVEKF+AEK   S A+A K+QR TST+L
Sbjct: 424 VMSSMGLTSSVRKVYAMVEKFEAEKISPSPAVATKKQRPTSTNL 459

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BLAST of Spg013960 vs. NCBI nr
Match: KAG6576094.1 (Adenine DNA glycosylase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 361.3 bits (926), Expect = 7.2e-96
Identity = 187/224 (83.48%), Postives = 201/224 (89.73%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           SPSCSTCPVFDHC+ALSISK DSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQ TSEL
Sbjct: 244 SPSCSTCPVFDHCEALSISKDDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQSTSEL 303

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
           +QSSRFLLVKRPDEGLLAGLWEFPSVLL+GEAD STRRESIN+LLS+ FGLEPKKNFEIV
Sbjct: 304 KQSSRFLLVKRPDEGLLAGLWEFPSVLLNGEADSSTRRESINSLLSKSFGLEPKKNFEIV 363

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
           IREDVGDFVHVF+HIRLKIYVEHLV+ LKG        EGSKLFR++EKKS  WKCVD K
Sbjct: 364 IREDVGDFVHVFSHIRLKIYVEHLVIRLKG--------EGSKLFRKQEKKSISWKCVDKK 423

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKTCSSRALARKRQRVTSTSL 226
           VMS+MGLTSSVRK YAMVEKF+AEK   S A+A K+QR TST+L
Sbjct: 424 VMSSMGLTSSVRKVYAMVEKFEAEKISPSPAVATKKQRPTSTNL 459

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BLAST of Spg013960 vs. ExPASy Swiss-Prot
Match: F4JRF4 (Adenine DNA glycosylase OS=Arabidopsis thaliana OX=3702 GN=MYH PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.9e-46
Identity = 99/194 (51.03%), Postives = 131/194 (67.53%), Query Frame = 0


Query: 3   PSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSELE 62
           PSCS+CPV   C+A S+S+ + ++ VTDYP K IK K RHD+  VCV+EI         +
Sbjct: 346 PSCSSCPVSSQCRAFSLSEENRTISVTDYPTKVIKAKPRHDFCCVCVLEI---HNLERNQ 405

Query: 63  QSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQC--FGLEPKKNFEI 122
              RF+LVKRP++GLLAGLWEFPSV+L+ EAD +TRR +IN  L +   F +E KK   I
Sbjct: 406 SGGRFVLVKRPEQGLLAGLWEFPSVILNEEADSATRRNAINVYLKEAFRFHVELKKACTI 465

Query: 123 VIREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDN 182
           V RE++G+FVH+FTHIR K+YVE LV+ L G            LF+ + K +  WKCV +
Sbjct: 466 VSREELGEFVHIFTHIRRKVYVELLVVQLTG--------GTEDLFKGQAKDTLTWKCVSS 525

Query: 183 KVMSTMGLTSSVRK 195
            V+ST+GLTS+VRK
Sbjct: 526 DVLSTLGLTSAVRK 528

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BLAST of Spg013960 vs. ExPASy Swiss-Prot
Match: Q99P21 (Adenine DNA glycosylase OS=Mus musculus OX=10090 GN=Mutyh PE=1 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-11
Identity = 55/177 (31.07%), Postives = 75/177 (42.37%), Query Frame = 0


Query: 3   PSCSTCPVFDHCKA--------------------------------LSISKHDSSVLVTD 62
           P CS CPV   C+A                                 S S  D S+ V +
Sbjct: 266 PLCSHCPVQSLCRAYQRVQRGQLSALPGRPDIEECALNTRQCQLCLTSSSPWDPSMGVAN 325

Query: 63  YPAKGIKTKQRHDYSAVCVVEILENQGTSELEQSSRFLLVKRPDEGLLAGLWEFPSVLLD 122
           +P K  +   R +YSA CVVE     G          LLV+RPD GLLAGLWEFPSV L+
Sbjct: 326 FPRKASRRPPREEYSATCVVEQPGAIG------GPLVLLVQRPDSGLLAGLWEFPSVTLE 385

Query: 123 GEADLSTRRESINNLLSQCFGLEPKKNFEIVIREDVGDFVHVFTHIRLKIYVEHLVL 148
             ++    +  +  L   C  L        +  + +G+ +H+F+HI+L   V  L L
Sbjct: 386 -PSEQHQHKALLQELQRWCGPL------PAIRLQHLGEVIHIFSHIKLTYQVYSLAL 429

[Close]

BLAST of Spg013960 vs. ExPASy Swiss-Prot
Match: Q9UIF7 (Adenine DNA glycosylase OS=Homo sapiens OX=9606 GN=MUTYH PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-09
Identity = 59/200 (29.50%), Postives = 95/200 (47.50%), Query Frame = 0


Query: 23  DSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSELEQSSRFLLVKRPDEGLLAGLW 82
           D ++ V ++P K  +   R + SA CV   LE  G       ++ LLV+RP+ GLLAGLW
Sbjct: 347 DQTLGVVNFPRKASRKPPREESSATCV---LEQPGA----LGAQILLVQRPNSGLLAGLW 406

Query: 83  EFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIVIREDVGDFVHVFTHIRLKIYV 142
           EFPSV  +    L  +R+++   L +  G  P  +        +G+ VH F+HI+L   V
Sbjct: 407 EFPSVTWEPSEQL--QRKALLQELQRWAGPLPATHL-----RHLGEVVHTFSHIKLTYQV 466

Query: 143 EHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNKVMSTMGLTSSVRKAYAMVEKF 202
               L L+G   VT    G++   + E               T  ++++++K +  V + 
Sbjct: 467 --YGLALEGQTPVTTVPPGARWLTQEE-------------FHTAAVSTAMKKVF-RVYQG 512

Query: 203 QAEKTCSSRALARKRQRVTS 223
           Q   TC    +  KR +V+S
Sbjct: 527 QQPGTC----MGSKRSQVSS 512

[Close]

BLAST of Spg013960 vs. ExPASy Swiss-Prot
Match: Q8R5G2 (Adenine DNA glycosylase OS=Rattus norvegicus OX=10116 GN=Mutyh PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-09
Identity = 45/130 (34.62%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 18  SISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSELEQSSRFLLVKRPDEGL 77
           S +  D ++ V ++P K  +   R +YSA CVVE     G          LLV+RP+ GL
Sbjct: 313 STNPWDPNMGVVNFPRKASRRPPREEYSATCVVEQPGATG------GPLILLVQRPNSGL 372

Query: 78  LAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIVIREDVGDFVHVFTHIR 137
           LAGLWEFPSV L  E     + +++   L       P         + +G+ +HVF+HI+
Sbjct: 373 LAGLWEFPSVTL--EPSGQHQHKALLQELQHWSAPLPTTPL-----QHLGEVIHVFSHIK 429

Query: 138 LKIYVEHLVL 148
           L   V  L L
Sbjct: 433 LTYQVYSLAL 429

[Close]

BLAST of Spg013960 vs. ExPASy Swiss-Prot
Match: Q10159 (Adenine DNA glycosylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=myh1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 47/173 (27.17%), Postives = 75/173 (43.35%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKAL---------SISKHD-----SSVLVTD--------------YPA 61
           SP CS CP+ + CKA          +  K+D      ++ +TD              YP 
Sbjct: 230 SPRCSVCPISEICKAYQEQNVIRDGNTIKYDIEDVPCNICITDIPSKEDLQNWVVARYPV 289

Query: 62  KGIKTKQRHDYSAVCVVEILENQGTSELEQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEA 121
              KTKQR + + V +      Q T    +   FL+ KRP  GLLAGLW+FP++    E+
Sbjct: 290 HPAKTKQREERALVVIF-----QKTDPSTKEKFFLIRKRPSAGLLAGLWDFPTIEFGQES 349

Query: 122 DLSTRRESINNLLSQCFGLEPKKNFEIVIREDVGDFVHVFTHIRLKIYVEHLV 147
                       ++Q    + +    I   +  G ++H+F+HIR   +V + +
Sbjct: 350 WPKDMDAEFQKSIAQWISNDSRS--LIKKYQSRGRYLHIFSHIRKTSHVFYAI 395

[Close]

BLAST of Spg013960 vs. ExPASy TrEMBL
Match: A0A6J1GP17 (Adenine DNA glycosylase OS=Cucurbita moschata OX=3662 GN=LOC111455831 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 5.4e-97
Identity = 188/224 (83.93%), Postives = 202/224 (90.18%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           SPSCSTCPVFDHC+ALS SK DSSVLVTDYPAKG+KTKQRHDYSAVCVVEILENQGTSEL
Sbjct: 244 SPSCSTCPVFDHCEALSSSKDDSSVLVTDYPAKGVKTKQRHDYSAVCVVEILENQGTSEL 303

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
           +QSSRFLLVKRPDEGLLAGLWEFPSVLL+GEAD STRRESIN+LLS+ FGLEPKKNFEIV
Sbjct: 304 KQSSRFLLVKRPDEGLLAGLWEFPSVLLNGEADSSTRRESINSLLSKSFGLEPKKNFEIV 363

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
           IREDVGDFVHVF+HIRLKIYVEHLVL LKG        EGSKLFR++EKKS  WKCVDNK
Sbjct: 364 IREDVGDFVHVFSHIRLKIYVEHLVLRLKG--------EGSKLFRKQEKKSISWKCVDNK 423

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKTCSSRALARKRQRVTSTSL 226
           VMS+MGLTSSVRK YAMVEKF+AEK   S A+A K+QR TST+L
Sbjct: 424 VMSSMGLTSSVRKVYAMVEKFEAEKISPSPAVATKKQRPTSTNL 459

[Close]

BLAST of Spg013960 vs. ExPASy TrEMBL
Match: A0A6J1JU23 (Adenine DNA glycosylase OS=Cucurbita maxima OX=3661 GN=LOC111488366 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.5e-96
Identity = 186/224 (83.04%), Postives = 201/224 (89.73%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           SPSCSTCPVFDHC+ALSISK DSSVLVTDYPAKGIKTKQRHDYSAVCVVE+LEN+GTSEL
Sbjct: 244 SPSCSTCPVFDHCEALSISKDDSSVLVTDYPAKGIKTKQRHDYSAVCVVEMLENRGTSEL 303

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
           +Q SRFLLVKRPDEGLLAGLWEFPSVLL+GEAD STRRESIN+LLS+ FGLEPKKNFEIV
Sbjct: 304 KQCSRFLLVKRPDEGLLAGLWEFPSVLLNGEADSSTRRESINSLLSKSFGLEPKKNFEIV 363

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
           IREDVGDFVHVF+HIRLKIYVEHLVL LKG        EGSKLFR++EKKS  WKCVDNK
Sbjct: 364 IREDVGDFVHVFSHIRLKIYVEHLVLRLKG--------EGSKLFRKQEKKSISWKCVDNK 423

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKTCSSRALARKRQRVTSTSL 226
           VMS+MGLTSSVRK Y MVEKF+AE    SRA+A K+QR TST+L
Sbjct: 424 VMSSMGLTSSVRKVYDMVEKFEAEMISPSRAVATKKQRATSTNL 459

[Close]

BLAST of Spg013960 vs. ExPASy TrEMBL
Match: A0A5A7T8X3 (Adenine DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G001490 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 5.9e-96
Identity = 187/220 (85.00%), Postives = 200/220 (90.91%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           +PSCSTCPVFDHC+ALSISK DSSVLVTDYPAKGIKTKQRHDYSAVCVVEILE+QGTSEL
Sbjct: 277 NPSCSTCPVFDHCEALSISKRDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILESQGTSEL 336

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
            QSSRFLLVKRPDEGLLAGLWEFPSV LDGEADL+TRRESI++LLS+ FGLEPKKNFEIV
Sbjct: 337 GQSSRFLLVKRPDEGLLAGLWEFPSVSLDGEADLTTRRESIDSLLSKNFGLEPKKNFEIV 396

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
            REDVGDF+HVFTHIRLKIYVEHLVLCLKG        EGSKLFR++EKKS LWKCV+NK
Sbjct: 397 NREDVGDFIHVFTHIRLKIYVEHLVLCLKG--------EGSKLFRKQEKKSILWKCVENK 456

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKT--CSSRALARKRQR 220
           VMSTMGLTSSVRKAYAMVEKFQA KT   SSR L RK+Q+
Sbjct: 457 VMSTMGLTSSVRKAYAMVEKFQAGKTSSSSSRVLPRKKQK 488

[Close]

BLAST of Spg013960 vs. ExPASy TrEMBL
Match: A0A0A0KC27 (Adenine DNA glycosylase OS=Cucumis sativus OX=3659 GN=Csa_6G088720 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.9e-95
Identity = 186/220 (84.55%), Postives = 198/220 (90.00%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           +PSCSTCPVFDHC+ALSISKHDSSVLVTDYPAKGIK KQRHDYSAVCVVEILE+QGT EL
Sbjct: 306 NPSCSTCPVFDHCEALSISKHDSSVLVTDYPAKGIKIKQRHDYSAVCVVEILESQGTPEL 365

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
            QSSRFLLVKRPDEGLLAGLWEFPSV LDGEADLSTRRESIN+LLS+ FGLE KKNFEIV
Sbjct: 366 GQSSRFLLVKRPDEGLLAGLWEFPSVSLDGEADLSTRRESINSLLSKNFGLEAKKNFEIV 425

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
            REDVGDF+H+FTHIRLKIYVEHLVLCLKG        EGSKLFR++EKKS LWKCV+NK
Sbjct: 426 NREDVGDFIHIFTHIRLKIYVEHLVLCLKG--------EGSKLFRKQEKKSILWKCVENK 485

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKTCSSR--ALARKRQR 220
           VMSTMGLTSSVRKAYAMVEKFQA KT SS   AL RK+Q+
Sbjct: 486 VMSTMGLTSSVRKAYAMVEKFQAGKTSSSSNCALPRKKQK 517

[Close]

BLAST of Spg013960 vs. ExPASy TrEMBL
Match: A0A1S3CBT2 (Adenine DNA glycosylase OS=Cucumis melo OX=3656 GN=LOC103498904 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.1e-94
Identity = 186/220 (84.55%), Postives = 198/220 (90.00%), Query Frame = 0


Query: 2   SPSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSEL 61
           +PSCSTCPVFDHC+ALSISK DSSVLVTDYPAKGIKTKQRHDYSAVCVVEILE+QGTSEL
Sbjct: 252 NPSCSTCPVFDHCEALSISKRDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILESQGTSEL 311

Query: 62  EQSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQCFGLEPKKNFEIV 121
            QSSRFLLVKRPDEGLLAGLWEFPSV LDGEAD STRRESI++LLS+ FGLEPKKNFEIV
Sbjct: 312 GQSSRFLLVKRPDEGLLAGLWEFPSVSLDGEADSSTRRESIDSLLSKNFGLEPKKNFEIV 371

Query: 122 IREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDNK 181
            REDVGDF+HVFTHIRLKIYVEHLVLCLKG        EGSKLFR++EKKS LWKCV+NK
Sbjct: 372 NREDVGDFIHVFTHIRLKIYVEHLVLCLKG--------EGSKLFRKQEKKSILWKCVENK 431

Query: 182 VMSTMGLTSSVRKAYAMVEKFQAEKT--CSSRALARKRQR 220
           VMSTMGLTSSVRKAYAMVEKFQA KT   SSR L  K+Q+
Sbjct: 432 VMSTMGLTSSVRKAYAMVEKFQAGKTSSSSSRVLPIKKQK 463

[Close]

BLAST of Spg013960 vs. TAIR 10
Match: AT4G12740.1 (HhH-GPD base excision DNA repair family protein )

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-47
Identity = 99/194 (51.03%), Postives = 131/194 (67.53%), Query Frame = 0


Query: 3   PSCSTCPVFDHCKALSISKHDSSVLVTDYPAKGIKTKQRHDYSAVCVVEILENQGTSELE 62
           PSCS+CPV   C+A S+S+ + ++ VTDYP K IK K RHD+  VCV+EI         +
Sbjct: 346 PSCSSCPVSSQCRAFSLSEENRTISVTDYPTKVIKAKPRHDFCCVCVLEI---HNLERNQ 405

Query: 63  QSSRFLLVKRPDEGLLAGLWEFPSVLLDGEADLSTRRESINNLLSQC--FGLEPKKNFEI 122
              RF+LVKRP++GLLAGLWEFPSV+L+ EAD +TRR +IN  L +   F +E KK   I
Sbjct: 406 SGGRFVLVKRPEQGLLAGLWEFPSVILNEEADSATRRNAINVYLKEAFRFHVELKKACTI 465

Query: 123 VIREDVGDFVHVFTHIRLKIYVEHLVLCLKGVFSVTMRSEGSKLFRRREKKSTLWKCVDN 182
           V RE++G+FVH+FTHIR K+YVE LV+ L G            LF+ + K +  WKCV +
Sbjct: 466 VSREELGEFVHIFTHIRRKVYVELLVVQLTG--------GTEDLFKGQAKDTLTWKCVSS 525

Query: 183 KVMSTMGLTSSVRK 195
            V+ST+GLTS+VRK
Sbjct: 526 DVLSTLGLTSAVRK 528

The following BLAST results are available for this feature:

BLAST of Spg013960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874808.1	3.8e-97	84.86	adenine DNA glycosylase isoform X1 [Benincasa hispida]	[more]
XP_038874810.1	3.8e-97	84.86	adenine DNA glycosylase isoform X3 [Benincasa hispida]	[more]
XP_038874809.1	3.8e-97	84.86	adenine DNA glycosylase isoform X2 [Benincasa hispida]	[more]
XP_022953220.1	1.1e-96	83.93	adenine DNA glycosylase [Cucurbita moschata]	[more]
KAG6576094.1	7.2e-96	83.48	Adenine DNA glycosylase, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Spg013960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JRF4	1.9e-46	51.03	Adenine DNA glycosylase OS=Arabidopsis thaliana OX=3702 GN=MYH PE=3 SV=1	[more]
Q99P21	5.7e-11	31.07	Adenine DNA glycosylase OS=Mus musculus OX=10090 GN=Mutyh PE=1 SV=2	[more]
Q9UIF7	1.4e-09	29.50	Adenine DNA glycosylase OS=Homo sapiens OX=9606 GN=MUTYH PE=1 SV=1	[more]
Q8R5G2	2.4e-09	34.62	Adenine DNA glycosylase OS=Rattus norvegicus OX=10116 GN=Mutyh PE=2 SV=1	[more]
Q10159	1.5e-08	27.17	Adenine DNA glycosylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) O...	[more]

BLAST of Spg013960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GP17	5.4e-97	83.93	Adenine DNA glycosylase OS=Cucurbita moschata OX=3662 GN=LOC111455831 PE=3 SV=1	[more]
A0A6J1JU23	4.5e-96	83.04	Adenine DNA glycosylase OS=Cucurbita maxima OX=3661 GN=LOC111488366 PE=3 SV=1	[more]
A0A5A7T8X3	5.9e-96	85.00	Adenine DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KC27	2.9e-95	84.55	Adenine DNA glycosylase OS=Cucumis sativus OX=3659 GN=Csa_6G088720 PE=3 SV=1	[more]
A0A1S3CBT2	1.1e-94	84.55	Adenine DNA glycosylase OS=Cucumis melo OX=3656 GN=LOC103498904 PE=3 SV=1	[more]

BLAST of Spg013960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12740.1	1.3e-47	51.03	HhH-GPD base excision DNA repair family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029119	MutY, C-terminal	PFAM	PF14815	NUDIX_4	coord: 64..154 e-value: 2.0E-13 score: 50.3
IPR029119	MutY, C-terminal	CDD	cd03431	DNA_Glycosylase_C	coord: 41..147 e-value: 7.46661E-21 score: 83.1551
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 37..208 e-value: 7.7E-31 score: 108.5
IPR044298	Adenine/Thymine-DNA glycosylase	PANTHER	PTHR42944	ADENINE DNA GLYCOSYLASE	coord: 2..216
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 32..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013960.1	Spg013960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006298	mismatch repair
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0034039	8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
molecular_function	GO:0035485	adenine/guanine mispair binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0032357	oxidized purine DNA binding
molecular_function	GO:0000701	purine-specific mismatch base pair DNA N-glycosylase activity
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds