Spg013919 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013919
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cytochrome b6f complex subunit (petM), putative
Location	scaffold3: 35652179 .. 35652544 (-)
RNA-Seq Expression	Spg013919
Synteny	Spg013919

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCGCCTCCGCTACCCTCTCGCCGGCCATGTCCACCGCCGCCCCCATCAGGCGGCAGAGGAACACCAATGTCCATTACATCACCGGCATCAATTCCTTTGGTGGGTTGAAAGCTCACAACAATGTCGTCTCCCTGGGCCTTCCCGTTTGCGCTGATCGGTCATTTGCAAACATTGTGAGCTCTTTGAAATACCCTTCGAAGGGAAAAGGCAGAAGCGGCGGTGGGGCTCTCTCTTCCACCTGTAATGCTGCCGGTGAGATTTTCAGGATTGCCGCCATTATCAATGGGCTTGTTCTTGTTGGTGTGGCTGTGGGGTTTGTTCTTCTCCGGATTGAGGCGTCTGTGGAGGAGGCTGAGTGA

mRNA sequence

ATGGCGACCGCCTCCGCTACCCTCTCGCCGGCCATGTCCACCGCCGCCCCCATCAGGCGGCAGAGGAACACCAATGTCCATTACATCACCGGCATCAATTCCTTTGGTGGGTTGAAAGCTCACAACAATGTCGTCTCCCTGGGCCTTCCCGTTTGCGCTGATCGGTCATTTGCAAACATTGTGAGCTCTTTGAAATACCCTTCGAAGGGAAAAGGCAGAAGCGGCGGTGGGGCTCTCTCTTCCACCTGTAATGCTGCCGGTGAGATTTTCAGGATTGCCGCCATTATCAATGGGCTTGTTCTTGTTGGTGTGGCTGTGGGGTTTGTTCTTCTCCGGATTGAGGCGTCTGTGGAGGAGGCTGAGTGA

Coding sequence (CDS)

ATGGCGACCGCCTCCGCTACCCTCTCGCCGGCCATGTCCACCGCCGCCCCCATCAGGCGGCAGAGGAACACCAATGTCCATTACATCACCGGCATCAATTCCTTTGGTGGGTTGAAAGCTCACAACAATGTCGTCTCCCTGGGCCTTCCCGTTTGCGCTGATCGGTCATTTGCAAACATTGTGAGCTCTTTGAAATACCCTTCGAAGGGAAAAGGCAGAAGCGGCGGTGGGGCTCTCTCTTCCACCTGTAATGCTGCCGGTGAGATTTTCAGGATTGCCGCCATTATCAATGGGCTTGTTCTTGTTGGTGTGGCTGTGGGGTTTGTTCTTCTCCGGATTGAGGCGTCTGTGGAGGAGGCTGAGTGA

Protein sequence

MATASATLSPAMSTAAPIRRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRSFANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE

Homology

[Close]

BLAST of Spg013919 vs. NCBI nr
Match: XP_038887487.1 (uncharacterized protein LOC120077620 [Benincasa hispida])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 113/125 (90.40%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MATASATLSPAMSTAAPI----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRS 60
           MATASATLSPAM TAAPI    RRQR TNVHYITG+NSFGGLKAHNNVVSLGLPVCAD+S
Sbjct: 1   MATASATLSPAMPTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 60

Query: 61  FANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 120
           FANI+SSLKYPSKGKG++GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEAS
Sbjct: 61  FANIMSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120

Query: 121 VEEAE 122
           VEEAE
Sbjct: 121 VEEAE 125

[Close]

BLAST of Spg013919 vs. NCBI nr
Match: XP_022972366.1 (uncharacterized protein LOC111470941 [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 2   ATASATLSPAMSTAAPI----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRSF 61
           ATASATLSPA+STAAPI    RRQRNTNVHYITG+NSFGGLKAHNN+ SLGLPVCAD+SF
Sbjct: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62

Query: 62  ANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 121
           ANIVSSLKYPSKGKG++GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

[Close]

BLAST of Spg013919 vs. NCBI nr
Match: XP_008454894.1 (PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo])

HSP 1 Score: 207.6 bits (527), Expect = 6.0e-50
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MATASATLSPAMSTAAPI----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRS 60
           MATASATLS AMSTAAPI    RRQR TNVHYITG+NSFGGLKAHNNVVSLGLPVCAD+S
Sbjct: 1   MATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 60

Query: 61  FANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 120
           FA IVSSLKYPSKGKG++GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEAS
Sbjct: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120

Query: 121 VEEAE 122
           VEEAE
Sbjct: 121 VEEAE 125

[Close]

BLAST of Spg013919 vs. NCBI nr
Match: XP_023554105.1 (uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 2   ATASATLSPAMSTAAPI----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRSF 61
           ATASATLSP +STAAPI    RRQRN NVHYITG+NSFGGLKAHNN+ SLGLPVCAD+SF
Sbjct: 3   ATASATLSPPISTAAPIAAGSRRQRNANVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62

Query: 62  ANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 121
           ANIVSSLKYPSKGKG++GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

[Close]

BLAST of Spg013919 vs. NCBI nr
Match: KAG6572003.1 (Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011679.1 Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 6.6e-49
Identity = 110/124 (88.71%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 2   ATASATLSPAMSTAAPI----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRSF 61
           AT SATLSP +STAAPI    RRQRNTNVHYITG+NSF GLKAHNN+ SLGLPVCAD+SF
Sbjct: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62

Query: 62  ANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 121
           ANIVSSLKYPSKGKG++GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

[Close]

BLAST of Spg013919 vs. ExPASy Swiss-Prot
Match: P80883 (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=petM PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.7e-08
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 84  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE 120
           NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

[Close]

BLAST of Spg013919 vs. ExPASy TrEMBL
Match: A0A6J1I5T0 (uncharacterized protein LOC111470941 OS=Cucurbita maxima OX=3661 GN=LOC111470941 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.9e-51
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 2   ATASATLSPAMSTAAPI----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRSF 61
           ATASATLSPA+STAAPI    RRQRNTNVHYITG+NSFGGLKAHNN+ SLGLPVCAD+SF
Sbjct: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62

Query: 62  ANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 121
           ANIVSSLKYPSKGKG++GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

[Close]

BLAST of Spg013919 vs. ExPASy TrEMBL
Match: A0A1S3C0U4 (uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.9e-50
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MATASATLSPAMSTAAPI----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRS 60
           MATASATLS AMSTAAPI    RRQR TNVHYITG+NSFGGLKAHNNVVSLGLPVCAD+S
Sbjct: 1   MATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 60

Query: 61  FANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 120
           FA IVSSLKYPSKGKG++GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEAS
Sbjct: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120

Query: 121 VEEAE 122
           VEEAE
Sbjct: 121 VEEAE 125

[Close]

BLAST of Spg013919 vs. ExPASy TrEMBL
Match: A0A6J1GND2 (uncharacterized protein LOC111455503 OS=Cucurbita moschata OX=3662 GN=LOC111455503 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 2   ATASATLSPAMSTAAPI----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRSF 61
           AT SATLSP +STAAPI    RRQRNTNVHYITG+NSF GLKAHNN+ SLGLPVCAD+SF
Sbjct: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62

Query: 62  ANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 121
           A+IVSSLKYPSKGKG++GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

[Close]

BLAST of Spg013919 vs. ExPASy TrEMBL
Match: A0A0A0K4W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.0e-47
Identity = 108/125 (86.40%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MATASATLSPAMSTAAPI----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADRS 60
           MATASATLS AMS+AAPI    RRQR TN H+I+G+NSF GLKAHNNVVSLGLPVCAD+S
Sbjct: 77  MATASATLSTAMSSAAPISAGSRRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQS 136

Query: 61  FANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 120
           FA IVSSLKYPSKGKG++GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEAS
Sbjct: 137 FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 196

Query: 121 VEEAE 122
           VEEAE
Sbjct: 197 VEEAE 201

[Close]

BLAST of Spg013919 vs. ExPASy TrEMBL
Match: A0A6J1C3G5 (uncharacterized protein LOC111008007 OS=Momordica charantia OX=3673 GN=LOC111008007 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.3e-46
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MATASATLSPAMSTAAPI-----RRQRNTNVHYITGINSFGGLKAHNNVVSLGLPVCADR 60
           MATASATLSPAMSTAAPI     R QR+ NVHYITG+NSFGGLKAHNNVVSLGLP+C D 
Sbjct: 1   MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDH 60

Query: 61  SFANIVSSLKYPSKGKGRS--GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRI 120
           SFA IVSSLKYPSKGKG++  GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRI
Sbjct: 61  SFAKIVSSLKYPSKGKGKNGGGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRI 120

Query: 121 EASVEEAE 122
           EA VEE E
Sbjct: 121 EAYVEETE 128

[Close]

BLAST of Spg013919 vs. TAIR 10
Match: AT2G26500.2 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-28
Identity = 77/129 (59.69%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 1   MATASA------TLSPAMSTAAPIRRQRNTNVHYITGINSFGGLKAHNN-VVSLGLPVCA 60
           MATA+A      T S  +S +   +++    V YITG+NS+GGLKA NN VVS+G P+C 
Sbjct: 1   MATAAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCT 60

Query: 61  DRSFANIVSSLKYPSKGKGRSG-GGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLR 120
           ++ FAN+V SL      KGR G GGALS+TCNA GEIF+IAAI+N L LVGVAVGFVLLR
Sbjct: 61  EQCFANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLR 120

Query: 121 IEASVEEAE 122
           IE SVEEAE
Sbjct: 121 IETSVEEAE 123

[Close]

BLAST of Spg013919 vs. TAIR 10
Match: AT2G26500.1 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-28
Identity = 77/129 (59.69%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 1   MATASA------TLSPAMSTAAPIRRQRNTNVHYITGINSFGGLKAHNN-VVSLGLPVCA 60
           MATA+A      T S  +S +   +++    V YITG+NS+GGLKA NN VVS+G P+C 
Sbjct: 1   MATAAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCT 60

Query: 61  DRSFANIVSSLKYPSKGKGRSG-GGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLR 120
           ++ FAN+V SL      KGR G GGALS+TCNA GEIF+IAAI+N L LVGVAVGFVLLR
Sbjct: 61  EQCFANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLR 120

Query: 121 IEASVEEAE 122
           IE SVEEAE
Sbjct: 121 IETSVEEAE 123

[Close]

BLAST of Spg013919 vs. TAIR 10
Match: AT2G26500.3 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 67.4 bits (163), Expect = 9.0e-12
Identity = 51/128 (39.84%), Postives = 64/128 (50.00%), Query Frame = 0


Query: 1   MATASA------TLSPAMSTAAPIRRQRNTNVHYITGINSFGGLKAHNN-VVSLGLPVCA 60
           MATA+A      T S  +S +   +++    V YITG+NS+GGLKA NN VVS+G P+C 
Sbjct: 1   MATAAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCT 60

Query: 61  DRSFANIVSSLKYPSKGKGRSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRI 120
           ++ FAN+V SLK                                     G  VGFVLLRI
Sbjct: 61  EQCFANVVMSLK-------------------------------------GRRVGFVLLRI 91

Query: 121 EASVEEAE 122
           E SVEEAE
Sbjct: 121 ETSVEEAE 91

The following BLAST results are available for this feature:

BLAST of Spg013919 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887487.1	1.2e-50	90.40	uncharacterized protein LOC120077620 [Benincasa hispida]	[more]
XP_022972366.1	1.2e-50	91.13	uncharacterized protein LOC111470941 [Cucurbita maxima]	[more]
XP_008454894.1	6.0e-50	90.40	PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo]	[more]
XP_023554105.1	1.7e-49	89.52	uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]	[more]
KAG6572003.1	6.6e-49	88.71	Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg013919 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80883	7.7e-08	83.33	Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=pet...	[more]

BLAST of Spg013919 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I5T0	5.9e-51	91.13	uncharacterized protein LOC111470941 OS=Cucurbita maxima OX=3661 GN=LOC111470941...	[more]
A0A1S3C0U4	2.9e-50	90.40	uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=...	[more]
A0A6J1GND2	1.2e-48	87.90	uncharacterized protein LOC111455503 OS=Cucurbita moschata OX=3662 GN=LOC1114555...	[more]
A0A0A0K4W4	1.0e-47	86.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1	[more]
A0A6J1C3G5	4.3e-46	85.16	uncharacterized protein LOC111008007 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of Spg013919 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26500.2	1.8e-28	59.69	cytochrome b6f complex subunit (petM), putative	[more]
AT2G26500.1	1.8e-28	59.69	cytochrome b6f complex subunit (petM), putative	[more]
AT2G26500.3	9.0e-12	39.84	cytochrome b6f complex subunit (petM), putative	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012595	PetM of cytochrome b6/f complex subunit 7	PFAM	PF08041	PetM	coord: 87..114 e-value: 1.7E-10 score: 40.3
IPR012595	PetM of cytochrome b6/f complex subunit 7	HAMAP	MF_00396	Cytb6_f_PetM	coord: 85..117 score: 12.774698
None	No IPR available	PANTHER	PTHR34951	B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED	coord: 1..121
None	No IPR available	SUPERFAMILY	103441	PetM subunit of the cytochrome b6f complex	coord: 86..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013919.1	Spg013919.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0016021	integral component of membrane