Spg013867 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013867
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	type IV secretion system protein virB10-like
Location	scaffold3: 35867177 .. 35867578 (-)
RNA-Seq Expression	Spg013867
Synteny	Spg013867

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGCTCGCCGCCGCCGCCCCACATCCCGCCCAGGGCTCCGTCGGCCCGGTCATCGCCGTCCTCGCCGTGATTTCCATCCTCGGCGTCATTGCCGGCATGATCGGCCGCCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGGTCCCTCGACCCTCCTCCTCCTCCGCCGCATCTCCGCCGTCCGCCGCAGCTCGAGGCCGTTCCTATGGCGGAACCGCTCGGTGGGCCGCCGGAAATCAAGGAAGGCGGCGATGGCGATGGCGAACGCGAGAATTTGCAGCCGGCGCCTCCTGGAAGCGGCGGTGAGTCGTGA

mRNA sequence

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGCTCGCCGCCGCCGCCCCACATCCCGCCCAGGGCTCCGTCGGCCCGGTCATCGCCGTCCTCGCCGTGATTTCCATCCTCGGCGTCATTGCCGGCATGATCGGCCGCCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGGTCCCTCGACCCTCCTCCTCCTCCGCCGCATCTCCGCCGTCCGCCGCAGCTCGAGGCCGTTCCTATGGCGGAACCGCTCGGTGGGCCGCCGGAAATCAAGGAAGGCGGCGATGGCGATGGCGAACGCGAGAATTTGCAGCCGGCGCCTCCTGGAAGCGGCGGTGAGTCGTGA

Coding sequence (CDS)

ATGTCCACTCCCGTCGACCAGCTCCAGCCCCCGCCGCTCGCCGCCGCCGCCCCACATCCCGCCCAGGGCTCCGTCGGCCCGGTCATCGCCGTCCTCGCCGTGATTTCCATCCTCGGCGTCATTGCCGGCATGATCGGCCGCCTCTGCTCCGGCCGCCCCGTCTTCGGCTACGGCGCCCACTACGACGTCGAAGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGATGGGTCCCTCGACCCTCCTCCTCCTCCGCCGCATCTCCGCCGTCCGCCGCAGCTCGAGGCCGTTCCTATGGCGGAACCGCTCGGTGGGCCGCCGGAAATCAAGGAAGGCGGCGATGGCGATGGCGAACGCGAGAATTTGCAGCCGGCGCCTCCTGGAAGCGGCGGTGAGTCGTGA

Protein sequence

MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDGERENLQPAPPGSGGES

Homology

[Close]

BLAST of Spg013867 vs. NCBI nr
Match: XP_023530142.1 (uncharacterized protein LOC111792788 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 6.0e-51
Identity = 111/133 (83.46%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MS P+DQLQPPP +AAA HPAQGSVGPVIAVLAVISILG IAGMIGR+C GRPVFGY AH
Sbjct: 1   MSVPLDQLQPPP-SAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAH 60

Query: 61  YDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDG--E 120
           YDVEDWVEKKCASCLDGSLD   PPPHLR PP +EA+P+AEPLGGPP IKEGGDGDG  E
Sbjct: 61  YDVEDWVEKKCASCLDGSLD---PPPHLRPPPPIEAIPVAEPLGGPPNIKEGGDGDGDRE 120

Query: 121 RENLQPAPPGSGG 132
           RENLQ  PPGSGG
Sbjct: 121 RENLQSVPPGSGG 129

[Close]

BLAST of Spg013867 vs. NCBI nr
Match: XP_022989510.1 (uncharacterized protein LOC111486567 [Cucurbita maxima])

HSP 1 Score: 209.1 bits (531), Expect = 2.3e-50
Identity = 110/133 (82.71%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MS P+DQLQPPP AAAA HPAQGSVGPVIAVLAVISILG IAGMIGR+C GRPVFGY AH
Sbjct: 1   MSVPLDQLQPPP-AAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAH 60

Query: 61  YDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDGERE 120
           YDVEDWVEKKCA+CLDGSLD   PPP LR PP +EA+P+AEPLGGPP IKE GDGD ERE
Sbjct: 61  YDVEDWVEKKCATCLDGSLD---PPPLLRPPPPIEAIPVAEPLGGPPNIKEDGDGDKERE 120

Query: 121 NLQPAPPGSGGES 134
           NLQ  PPGSGGES
Sbjct: 121 NLQSVPPGSGGES 129

[Close]

BLAST of Spg013867 vs. NCBI nr
Match: XP_022927713.1 (uncharacterized protein LOC111434531 [Cucurbita moschata])

HSP 1 Score: 208.8 bits (530), Expect = 3.0e-50
Identity = 109/133 (81.95%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MS P+DQLQPPP +AAA HPAQGSVGPVIAVLAVISILG IAGMIGR+C GRPVFGY A 
Sbjct: 1   MSVPLDQLQPPP-SAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQ 60

Query: 61  YDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDGERE 120
           YDVEDWVEKKCASCLDGSLD   PPPHLR PP +EA+P++EPLGGPP IKEGGDGD ERE
Sbjct: 61  YDVEDWVEKKCASCLDGSLD---PPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRERE 120

Query: 121 NLQPAPPGSGGES 134
           NLQ   PGSGGES
Sbjct: 121 NLQSVAPGSGGES 129

[Close]

BLAST of Spg013867 vs. NCBI nr
Match: KAG6588645.1 (hypothetical protein SDJN03_17210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.8 bits (530), Expect = 3.0e-50
Identity = 109/133 (81.95%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MS PVDQLQPPP +AAA HPAQGSVGPVIAVLAVISILG IAGMIGR+C GRPVFGY AH
Sbjct: 1   MSVPVDQLQPPP-SAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAH 60

Query: 61  YDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDGERE 120
           YDVEDWVEKKCA+CLDGSLD   PPPHLR PP +EA+P++EPLG PP IKEGGDGD ERE
Sbjct: 61  YDVEDWVEKKCATCLDGSLD---PPPHLRPPPPIEAIPVSEPLGEPPNIKEGGDGDRERE 120

Query: 121 NLQPAPPGSGGES 134
           NLQ   PGSGGES
Sbjct: 121 NLQSVAPGSGGES 129

[Close]

BLAST of Spg013867 vs. NCBI nr
Match: KAG6571994.1 (hypothetical protein SDJN03_28722, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-49
Identity = 109/134 (81.34%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MSTPVDQLQPPP A    H   GSVGPVIAVLAVISILGVIAG+IGRLCSGRPVFGYGAH
Sbjct: 1   MSTPVDQLQPPPTA----HSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAH 60

Query: 61  YDVEDWVEKKCASCLDGSLD-PPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDGER 120
           YDVE+WVEKKCASCLDGSLD PPPPPPHLR PP L+AVP+ EPLGGPPEIK+G   D +R
Sbjct: 61  YDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQG--ADDKR 120

Query: 121 ENLQPAPPGSGGES 134
           ENLQ A PG+GGES
Sbjct: 121 ENLQSAAPGTGGES 128

[Close]

BLAST of Spg013867 vs. ExPASy TrEMBL
Match: A0A6J1JMK0 (uncharacterized protein LOC111486567 OS=Cucurbita maxima OX=3661 GN=LOC111486567 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 110/133 (82.71%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MS P+DQLQPPP AAAA HPAQGSVGPVIAVLAVISILG IAGMIGR+C GRPVFGY AH
Sbjct: 1   MSVPLDQLQPPP-AAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAH 60

Query: 61  YDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDGERE 120
           YDVEDWVEKKCA+CLDGSLD   PPP LR PP +EA+P+AEPLGGPP IKE GDGD ERE
Sbjct: 61  YDVEDWVEKKCATCLDGSLD---PPPLLRPPPPIEAIPVAEPLGGPPNIKEDGDGDKERE 120

Query: 121 NLQPAPPGSGGES 134
           NLQ  PPGSGGES
Sbjct: 121 NLQSVPPGSGGES 129

[Close]

BLAST of Spg013867 vs. ExPASy TrEMBL
Match: A0A6J1ELS6 (uncharacterized protein LOC111434531 OS=Cucurbita moschata OX=3662 GN=LOC111434531 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 109/133 (81.95%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MS P+DQLQPPP +AAA HPAQGSVGPVIAVLAVISILG IAGMIGR+C GRPVFGY A 
Sbjct: 1   MSVPLDQLQPPP-SAAAIHPAQGSVGPVIAVLAVISILGFIAGMIGRVCFGRPVFGYNAQ 60

Query: 61  YDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDGERE 120
           YDVEDWVEKKCASCLDGSLD   PPPHLR PP +EA+P++EPLGGPP IKEGGDGD ERE
Sbjct: 61  YDVEDWVEKKCASCLDGSLD---PPPHLRPPPPIEAIPVSEPLGGPPNIKEGGDGDRERE 120

Query: 121 NLQPAPPGSGGES 134
           NLQ   PGSGGES
Sbjct: 121 NLQSVAPGSGGES 129

[Close]

BLAST of Spg013867 vs. ExPASy TrEMBL
Match: A0A6J1GL66 (uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC111455383 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.9e-49
Identity = 107/132 (81.06%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MSTPVDQLQPPP A    H   GSVGPVIAVLAVISILGVIAG+IGRLCSGRPVFGYGAH
Sbjct: 1   MSTPVDQLQPPPTA----HSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAH 60

Query: 61  YDVEDWVEKKCASCLDGSLD-PPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDGER 120
           YDVE+WVEKKCASCLDGSLD PPPPPPHLR PP L+AVP+ EPLGGPPEIK+G   D +R
Sbjct: 61  YDVEEWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGGPPEIKQG--ADDKR 120

Query: 121 ENLQPAPPGSGG 132
           ENLQ A PG+GG
Sbjct: 121 ENLQSAAPGTGG 126

[Close]

BLAST of Spg013867 vs. ExPASy TrEMBL
Match: A0A6J1IBA8 (uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 105/131 (80.15%), Postives = 112/131 (85.50%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MSTP DQLQPPP A    H   GSVGPVIAVLAVISILGVIAG+IGRLCSGRPVFGYGAH
Sbjct: 1   MSTPFDQLQPPPTA----HSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAH 60

Query: 61  YDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPQLEAVPMAEPLGGPPEIKEGGDGDGERE 120
           YDVE+WVEKKCASCLDGSLDPPPPP HLR PP L+AVP+ EPLGGPPEIK+G   D +RE
Sbjct: 61  YDVEEWVEKKCASCLDGSLDPPPPPAHLRHPPPLDAVPVVEPLGGPPEIKQG--ADEKRE 120

Query: 121 NLQPAPPGSGG 132
           NLQ A PG+GG
Sbjct: 121 NLQSAAPGTGG 125

[Close]

BLAST of Spg013867 vs. ExPASy TrEMBL
Match: A0A5A7SPN0 (Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00320 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.8e-48
Identity = 107/138 (77.54%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 1   MSTPVDQLQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60
           MSTP+DQLQPPP      H +  SVGP+IAVLAVISILGVIAGMIGRLCSGRPVFGYGAH
Sbjct: 1   MSTPIDQLQPPP----PLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAH 60

Query: 61  YDVEDWVEKKCASCLDGSLD----PPPPPPHLRRPPQLEAVPMAEPLGG-PPEIKEGGDG 120
           YDVEDWVEKKCASCLDGSLD    PPPPPPHLR PP L++VP+AEPLGG PPEIK+G D 
Sbjct: 61  YDVEDWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGADA 120

Query: 121 DGERENLQPAPPGSGGES 134
           D + ENLQ A PG+GGES
Sbjct: 121 DAKGENLQSAAPGTGGES 134

[Close]

BLAST of Spg013867 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-13
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 9   QPPPL------AAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYD 68
           QPPP       +++       ++GP IAV  V+++L V+A +IGRLCSG+ + GYG  YD
Sbjct: 9   QPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYG-DYD 68

Query: 69  VEDWVEKKCASCLDGSLDPPPPPPHLRRPPQ-----LEAVPMAEPLGGPPEIKEGGDGDG 128
           +E W E +C SC+DG + P  P P    PP+       +   AE  G   ++    DG+ 
Sbjct: 69  MERWAESRCGSCIDGHIHPHRPSPSPTPPPRQPLHHTSSGVSAESEGHVADLDHETDGE- 128

[Close]

BLAST of Spg013867 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 8   LQPPPLAAAAPHPAQGSVGPVIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWV 67
           + PP     + +    S+  ++ VLAVI+IL V+AG+  RLC GR +  +G  +D+E WV
Sbjct: 21  IDPPSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHL-SHGGDHDIEGWV 80

Query: 68  EKKCASCLDGSL-------DPPPPPP 87
           E+KC SC+D  +        PPPPPP
Sbjct: 81  ERKCRSCIDAGIPAVSAAPSPPPPPP 105

The following BLAST results are available for this feature:

BLAST of Spg013867 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530142.1	6.0e-51	83.46	uncharacterized protein LOC111792788 [Cucurbita pepo subsp. pepo]	[more]
XP_022989510.1	2.3e-50	82.71	uncharacterized protein LOC111486567 [Cucurbita maxima]	[more]
XP_022927713.1	3.0e-50	81.95	uncharacterized protein LOC111434531 [Cucurbita moschata]	[more]
KAG6588645.1	3.0e-50	81.95	hypothetical protein SDJN03_17210, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571994.1	1.9e-49	81.34	hypothetical protein SDJN03_28722, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg013867 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg013867 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMK0	1.1e-50	82.71	uncharacterized protein LOC111486567 OS=Cucurbita maxima OX=3661 GN=LOC111486567...	[more]
A0A6J1ELS6	1.4e-50	81.95	uncharacterized protein LOC111434531 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]
A0A6J1GL66	7.9e-49	81.06	uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC1114553...	[more]
A0A6J1IBA8	1.0e-48	80.15	uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940...	[more]
A0A5A7SPN0	1.8e-48	77.54	Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Spg013867 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26520.1	4.0e-13	35.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57500.1	2.9e-11	40.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..92
None	No IPR available	PANTHER	PTHR33429:SF2	OS01G0888850 PROTEIN	coord: 1..103
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013867.1	Spg013867.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane