Spg013861 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013861
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	thionin-like protein 2
Location	scaffold3: 47875576 .. 47876906 (+)
RNA-Seq Expression	Spg013861
Synteny	Spg013861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACAAAAACAAAAACGAAAAACAAAAATAAAAAAGAAAAAGCAAAAAGCAAAAAGCAAGCAAAGATTTGAAAATGAAGCAAGTGGTGGGAATTTGCTTCGTTTTGATAATCTTTGTTGCAGGAGCTGGGAGGTCCTCAGCCAAACCCTTTGGGGATTGCTACAGCAAATGCTTCGATCCCTGCGGCCGTCCGTTGATGCCGGATGGCCGGCGAGGAATAGTTTTGCTGGCATTCTGCAGCTCAAAGTGCGCCGGGCAATGCCTGTTGGCTGATAAACAGTCTTCCTCAGTGGGCTTGAACCAAGACGACAGCCGTAGTGACTTCTGCAAGCTTGGTTGTGTCACTTCTAAATGCACCAAGTTCACCACTGAGCAAGACCCAGGTCTTAATTACTACTACCTTTCTTTATTTTTATTTTTATTTTTTTGGGATAAAGTCATATAATATCTACTTATATTTTCAGCCCTCTCTCTAGTTTTGATAGATGTTATTTATTTATTTTTATGAACATGATAGCTGTGGAGAAAGTGGAAAGCTGCGTAGACTCGTGCTCTCTGACTTGCGCATACGACGGGCCGAACGAAGGCGGACTTGTTTGACTTTTAGGATACTATGAAATGAAGGAATGTCAAGGGTGTGAAACAAAACCATTAATTTGGCTAAAAGTCTTATTTCAGATTTAAGTTAAAGCCTTCTAGTTTCAAAATTATTGCTCATGCAGCCATCAATATGTATAAAAGAAAAAAGACAAAAAAAAAAAGGTTGATGCTTGTGTGAGAAATGCTAAGAGTTCGGTCCATGAATTTTCCCTATGTTTACGTGTCAAAATTGTCCACAATATTCCTCAAACTAGATAAAGAGATCGTATAAAATATGTAAAATTCTTTGCATTTTTTTATCTTATGTTGACTCTTTATTACATTCACTACTTGATGTAAGTAAAACAACGACCAATATAATTTTTTTTTCAAAACCCAATAATTATTGAGATGTTGATATCTGTAATAAATATATATAATTGTTGGGAGTGTAATCAAAATCTCACATTGGCTAGATAAGGGGATGATCATGAGCATATAAGGGATGAAAAATATCAATATTGGTATGAGGTATTTTGGAGTGGATCCAAAGCAAAGCCACGAGTGTTTATACCAAAAGTGGACAATATCATACTATTGTGTGGAGATATGTGGGTGTCCGATAGACCTTTCGAAGTGGTATCAGAGCCATGTCTCAGAGGTAGCCGTGTCGGGTGGAATCCTCGGATGCCGAACAAAGAAGTTGTGAGCCTAAGGATACTTCGGAGAAATGCAGTTGAACGGACTCTT

mRNA sequence

ATGAAGCAAGTGGTGGGAATTTGCTTCGTTTTGATAATCTTTGTTGCAGGAGCTGGGAGGTCCTCAGCCAAACCCTTTGGGGATTGCTACAGCAAATGCTTCGATCCCTGCGGCCGTCCGTTGATGCCGGATGGCCGGCGAGGAATAGTTTTGCTGGCATTCTGCAGCTCAAAGTGCGCCGGGCAATGCCTGTTGGCTGATAAACAGTCTTCCTCAGTGGGCTTGAACCAAGACGACAGCCGTAGTGACTTCTGCAAGCTTGGTTGTGTCACTTCTAAATGCACCAAGTTCACCACTGAGCAAGACCCAGATATGTGGGTGTCCGATAGACCTTTCGAAGTGGTATCAGAGCCATGTCTCAGAGGTAGCCGTGTCGGGTGGAATCCTCGGATGCCGAACAAAGAAGTTGTGAGCCTAAGGATACTTCGGAGAAATGCAGTTGAACGGACTCTT

Coding sequence (CDS)

ATGAAGCAAGTGGTGGGAATTTGCTTCGTTTTGATAATCTTTGTTGCAGGAGCTGGGAGGTCCTCAGCCAAACCCTTTGGGGATTGCTACAGCAAATGCTTCGATCCCTGCGGCCGTCCGTTGATGCCGGATGGCCGGCGAGGAATAGTTTTGCTGGCATTCTGCAGCTCAAAGTGCGCCGGGCAATGCCTGTTGGCTGATAAACAGTCTTCCTCAGTGGGCTTGAACCAAGACGACAGCCGTAGTGACTTCTGCAAGCTTGGTTGTGTCACTTCTAAATGCACCAAGTTCACCACTGAGCAAGACCCAGATATGTGGGTGTCCGATAGACCTTTCGAAGTGGTATCAGAGCCATGTCTCAGAGGTAGCCGTGTCGGGTGGAATCCTCGGATGCCGAACAAAGAAGTTGTGAGCCTAAGGATACTTCGGAGAAATGCAGTTGAACGGACTCTT

Protein sequence

MKQVVGICFVLIIFVAGAGRSSAKPFGDCYSKCFDPCGRPLMPDGRRGIVLLAFCSSKCAGQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDPDMWVSDRPFEVVSEPCLRGSRVGWNPRMPNKEVVSLRILRRNAVERTL

Homology

[Close]

BLAST of Spg013861 vs. NCBI nr
Match: XP_038899787.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 1   MKQVVGICFVLIIFVAGAGRSSAKPFGDCYSKCFDPCG-RPLMPDGRRGIVLLAFCSSKC 60
           MK V+ ICF++ + V   GRS+A  FG CY+KCF  C   P +P G         C +KC
Sbjct: 1   MKSVILICFIMSLVV---GRSTAS-FGKCYAKCFVVCAITPGIPIGT--------CGAKC 60

Query: 61  AGQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDP 104
            G CL     SS +  N  D+   FCKLGC TS CTKF+T++DP
Sbjct: 61  LGDCLFI--ASSPLDFNHLDTHY-FCKLGCATSLCTKFSTKKDP 89

[Close]

BLAST of Spg013861 vs. NCBI nr
Match: KAG7025781.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 50/122 (40.98%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 1   MKQVVGICFVLIIFVAGAGRSSAKPFGDCYSKCFDPCG-RPLMPDGRRGIVLLAFCSSKC 60
           MK +V ICF+L +    AGRS+A  FG CY+KCF  C   P +P G         C  KC
Sbjct: 1   MKSIVVICFILSLV---AGRSTAS-FGKCYAKCFIVCAITPGVPIGT--------CGGKC 60

Query: 61  AGQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDPDMWVSDRPFEVVSEPC 120
              CL     S+   LN  D+   FCKLGC TS CTKF+T+ DP     +      S  C
Sbjct: 61  LADCLF--PASAPTDLNHLDTHY-FCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTC 107

Query: 121 LR 122
           L+
Sbjct: 121 LK 107

[Close]

BLAST of Spg013861 vs. NCBI nr
Match: KAG6593441.1 (Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-10
Identity = 50/122 (40.98%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 1   MKQVVGICFVLIIFVAGAGRSSAKPFGDCYSKCFDPCG-RPLMPDGRRGIVLLAFCSSKC 60
           MK +V ICF+L +    AGRS+A  FG CY+KCF  C   P +P G         C  KC
Sbjct: 1   MKSIVVICFILSLV---AGRSTAS-FGKCYAKCFIVCAITPGVPIGT--------CGGKC 60

Query: 61  AGQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDPDMWVSDRPFEVVSEPC 120
              CL     S+   LN  D+   FCKLGC TS CTKF+T+ DP     +      S  C
Sbjct: 61  LADCLF--PASAPRDLNHLDTHY-FCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTC 107

Query: 121 LR 122
           L+
Sbjct: 121 LK 107

[Close]

BLAST of Spg013861 vs. NCBI nr
Match: XP_023000407.1 (thionin-like protein 2 [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-10
Identity = 51/122 (41.80%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 1   MKQVVGICFVLIIFVAGAGRSSAKPFGDCYSKCFDPCG-RPLMPDGRRGIVLLAFCSSKC 60
           MK VV ICF+L +    AGRS+A  FG CY+KCF  C   P +P G         C  KC
Sbjct: 36  MKSVVVICFILSLV---AGRSTAS-FGKCYAKCFIVCAITPGVPIGT--------CGGKC 95

Query: 61  AGQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDPDMWVSDRPFEVVSEPC 120
              CL     S+   LN  D+   FCKLGC TS CTKF+T+ DP     +      S  C
Sbjct: 96  LADCLFL--ASAPRDLNHLDTHY-FCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTC 142

Query: 121 LR 122
           L+
Sbjct: 156 LK 142

[Close]

BLAST of Spg013861 vs. NCBI nr
Match: KAG7014098.1 (Thionin-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-09
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 1   MKQVVGICFVLIIFVAGAGRSSAKPFGDCYSKCFDPCGRPLMPDGRRGIVLLAFCSSKCA 60
           MK VV ICF+L +    AGRS+A  F  CY+KCF  C   + P      + L  C + C 
Sbjct: 1   MKSVVIICFILSLM---AGRSTAS-FRKCYAKCFIACA--ITPG-----ITLGTCGATCL 60

Query: 61  GQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDPDMWVSDRPFEVVSEPCL 120
            +CL     S+ +  N  ++   FCKLGC TS CTKF+T+ DP     +R  +  +  C+
Sbjct: 61  AKCLFI--ASAPMDFNHMNTHY-FCKLGCATSMCTKFSTKNDPSEKKVERCVDSCAGTCI 107

Query: 121 R 122
           +
Sbjct: 121 K 107

[Close]

BLAST of Spg013861 vs. ExPASy TrEMBL
Match: A0A0A0KC18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446640 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 50/110 (45.45%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 1   MKQVVGICFVLIIFVAGAGRSSAKPFGDCYSKCFDPCG-RPLMPDGRRGIVLLAFCSSKC 60
           MK VV ICF+L +    AGRS+A  FG CY+KCF  C   P +P G         C +KC
Sbjct: 1   MKSVVLICFILSLV---AGRSTAS-FGKCYAKCFIVCAITPGIPVGT--------CGAKC 60

Query: 61  AGQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDPDMWVSD 110
              CL     SS + LN  D+   FCKLGC TS+CTKF+T++DP   +S+
Sbjct: 61  LADCLFI--ASSPMDLNYMDTHY-FCKLGCATSRCTKFSTKKDPGKKLSN 95

[Close]

BLAST of Spg013861 vs. ExPASy TrEMBL
Match: A0A6J1KDK0 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 51/122 (41.80%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 1   MKQVVGICFVLIIFVAGAGRSSAKPFGDCYSKCFDPCG-RPLMPDGRRGIVLLAFCSSKC 60
           MK VV ICF+L +    AGRS+A  FG CY+KCF  C   P +P G         C  KC
Sbjct: 36  MKSVVVICFILSLV---AGRSTAS-FGKCYAKCFIVCAITPGVPIGT--------CGGKC 95

Query: 61  AGQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDPDMWVSDRPFEVVSEPC 120
              CL     S+   LN  D+   FCKLGC TS CTKF+T+ DP     +      S  C
Sbjct: 96  LADCLFL--ASAPRDLNHLDTHY-FCKLGCATSLCTKFSTKTDPAEKKVESCVNSCSRTC 142

Query: 121 LR 122
           L+
Sbjct: 156 LK 142

[Close]

BLAST of Spg013861 vs. ExPASy TrEMBL
Match: A0A6J1DDL8 (thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111019402 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-08
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 7   ICFVLIIFVAGAGRSSAKPFGDCYSKCFDPCG-RPLMPDGRRGIVLLAFCSSKCAGQCLL 66
           +  V+++    AG+S+A  FG CY+KCF  C   P +P G         C++KC   CL 
Sbjct: 6   LILVMLVLSLVAGKSTAS-FGKCYAKCFVVCAITPGIPVGT--------CAAKCLTDCLF 65

Query: 67  ADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDP 104
               +++   +Q D+R  FCKLGC TS CTKF+T++DP
Sbjct: 66  RAASTTADFNDQIDTRY-FCKLGCATSLCTKFSTKKDP 93

[Close]

BLAST of Spg013861 vs. ExPASy TrEMBL
Match: A0A067E189 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036060mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 41/123 (33.33%), Postives = 54/123 (43.90%), Query Frame = 0


Query: 2   KQVVGICFVLIIFVAG--AGRSSAKPFGDCYSKCFDPCGRPLMPDGRRGIVLL-AFCSSK 61
           KQ V    V++  + G   G+ +A    DCY  CF  C       G  GI+L    C  K
Sbjct: 3   KQQVLKFIVMVSIMLGLLVGQPTADGTWDCYEDCFYDC-----VTGGLGIILQPTACHIK 62

Query: 62  CAGQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDPDMWVSDRPFEVVSEP 121
           CA QC           L   +    FCKLGCVTSKCTK  T++ P     +   +  S+ 
Sbjct: 63  CAKQCAF-----GGTSLESRNDPQSFCKLGCVTSKCTKLDTKEKPGEKKGESCVDSCSKT 115

[Close]

BLAST of Spg013861 vs. ExPASy TrEMBL
Match: V4SN38 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026794mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 41/123 (33.33%), Postives = 54/123 (43.90%), Query Frame = 0


Query: 2   KQVVGICFVLIIFVAG--AGRSSAKPFGDCYSKCFDPCGRPLMPDGRRGIVLL-AFCSSK 61
           KQ V    V++  + G   G+ +A    DCY  CF  C       G  GI+L    C  K
Sbjct: 3   KQQVLKFIVMVSIMLGLLVGQPTADGTWDCYEDCFYDC-----VTGGLGIILQPTACHIK 62

Query: 62  CAGQCLLADKQSSSVGLNQDDSRSDFCKLGCVTSKCTKFTTEQDPDMWVSDRPFEVVSEP 121
           CA QC           L   +    FCKLGCVTSKCTK  T++ P     +   +  S+ 
Sbjct: 63  CAKQCAF-----GGTSLESRNDPQSFCKLGCVTSKCTKLDTKEKPGEKKGESCVDSCSKT 115

The following BLAST results are available for this feature:

BLAST of Spg013861 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899787.1	1.5e-10	45.19	thionin-like protein 2 [Benincasa hispida]	[more]
KAG7025781.1	2.0e-10	40.98	Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6593441.1	4.4e-10	40.98	Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023000407.1	4.4e-10	41.80	thionin-like protein 2 [Cucurbita maxima]	[more]
KAG7014098.1	3.8e-09	37.19	Thionin-like protein 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Spg013861 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg013861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC18	1.1e-11	45.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446640 PE=4 SV=1	[more]
A0A6J1KDK0	2.1e-10	41.80	thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111494667 PE=4 SV=1	[more]
A0A6J1DDL8	2.6e-08	39.80	thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111019402 PE=4 SV=1	[more]
A0A067E189	3.2e-06	33.33	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036060mg PE=4 SV=1	[more]
V4SN38	3.2e-06	33.33	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026794mg PE=4 ...	[more]

BLAST of Spg013861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038975	Thionin-like protein	PANTHER	PTHR36312	THIONIN-LIKE PROTEIN 1	coord: 4..119
None	No IPR available	PANTHER	PTHR36312:SF1	THIONIN-LIKE PROTEIN 1	coord: 4..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013861.1	Spg013861.1	mRNA