Spg013727 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg013727
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionEcotropic viral integration site protein
Locationscaffold3: 46688654 .. 46689643 (+)
RNA-Seq ExpressionSpg013727
SyntenySpg013727
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACTTTGCAGTTGCACCATCCGCTCTGGAAATTGGTCGGGTGAAGCAGTGACAAGTTTCTTCGAGCTCTCGTTTGTTTTTAATTATCTGATCAAAATAGATGTTTACACTCTCCTAGTCCTTGGAGTTGGGACACTATGTTTATTTGTTTCAGAGAGTACCCATTGTTTTATAAATTGTAACCATGTTCATTGTAATTATCTACTGGACATATCCATCCATGCCAGGAAATTTTGGGAACTTTCATAAGATGCATTTATATTGCAGGTGGAATCACTGACCAACCAGGAAGAAGTTGAGTTGCGTACGAAGATTGAAGCCCTTGGACTTGAAGTTACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTGGATGAAGTTAGTCTGGTTTCCTTTATACATTCATTGCATTTATCTTTGTTCCATTGCAAGCATTTTCTTGAAGAGATTGAATCTAGTGTCAAAAAAGTTTCCTTTCTATTTACCTATTTTATGCCCTCTATTCAGATGGAAATTGCCAAGGAGTTGGATAAATTATCTGAAAAGCTAGATGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCAGATCCACAGGTGCAGTCTCTGTTGAGTGACACTGCTGATATTTGGATGCCAGTGATAACTGCTACGGCTGATGATCGACGAAAATTTACAGCTTCAGTTGGAGAAAATTCAGAAGCAGAAGAGAATTGTGCCAGTTAGATAAATGTTTTTTTTTTTTTTTTTTGTTTATTTAAGGGATAAGGAAAGTAATTTCAATTCTCTATCTCAATTTTGTTATATTCGATAAAGAATGTTCCGACTCATAACTTTAGCTTTTACAATGGTTGGAATGTGTTTTTCCAACAGATAATTTATTGTATCATCTTGTCTGTAGAAATCCTTCATAATTATCTAAAGAAAAAAAAGGTACTAAGCCTTTTTATTGATGTGAAGTAAAATCAAATATATTTTCTTTACCATTA

mRNA sequence

ATGAAGACTTTGCAGTTGCACCATCCGCTCTGGAAATTGGTGGAATCACTGACCAACCAGGAAGAAGTTGAGTTGCGTACGAAGATTGAAGCCCTTGGACTTGAAGTTACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTGGATGAAGTTAGTCTGATGGAAATTGCCAAGGAGTTGGATAAATTATCTGAAAAGCTAGATGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCAGATCCACAGGTGCAGTCTCTGTTGAGTGACACTGCTGATATTTGGATGCCAGTGATAACTGCTACGGCTGATGATCGACGAAAATTTACAGCTTCAGTTGGAGAAAATTCAGAAGCAGAAGAGAATTGTGCCAGTTAG

Coding sequence (CDS)

ATGAAGACTTTGCAGTTGCACCATCCGCTCTGGAAATTGGTGGAATCACTGACCAACCAGGAAGAAGTTGAGTTGCGTACGAAGATTGAAGCCCTTGGACTTGAAGTTACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTGGATGAAGTTAGTCTGATGGAAATTGCCAAGGAGTTGGATAAATTATCTGAAAAGCTAGATGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCAGATCCACAGGTGCAGTCTCTGTTGAGTGACACTGCTGATATTTGGATGCCAGTGATAACTGCTACGGCTGATGATCGACGAAAATTTACAGCTTCAGTTGGAGAAAATTCAGAAGCAGAAGAGAATTGTGCCAGTTAG

Protein sequence

MKTLQLHHPLWKLVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENCAS
Homology
BLAST of Spg013727 vs. NCBI nr
Match: KAG7014211.1 (hypothetical protein SDJN02_24386 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.1 bits (497), Expect = 1.9e-46
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0

Query: 14  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSEKLDDVDEMI 73
           VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSL+EIAKELDKLSEKLDDVDEMI
Sbjct: 22  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLLEIAKELDKLSEKLDDVDEMI 81

Query: 74  SSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENCAS 125
           SSAMAADPQVQSLLSDTADIWMPVITA+AD+RRKFTASVGENSE EENC S
Sbjct: 82  SSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENCGS 132

BLAST of Spg013727 vs. NCBI nr
Match: KAG7025681.1 (hypothetical protein SDJN02_12179, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 5.0e-44
Identity = 105/120 (87.50%), Postives = 108/120 (90.00%), Query Frame = 0

Query: 5   QLHHPLWKLVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSE 64
           QL   L   VESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDEV LME+AKELDKLSE
Sbjct: 13  QLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRLMELAKELDKLSE 72

Query: 65  KLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENCAS 124
           KLDDVDEMISSAMAADPQVQSLLS TADIWMPVITA+ DDRRKFTAS GENSE E+NCAS
Sbjct: 73  KLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGENSETEKNCAS 132

BLAST of Spg013727 vs. NCBI nr
Match: XP_022953424.1 (uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 uncharacterized protein LOC111806741 [Cucurbita pepo subsp. pepo] >KAG6575661.1 hypothetical protein SDJN03_26300, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 0

Query: 14  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSEKLDDVDEMI 73
           VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   +EIAKELDKLSEKLDDVDEMI
Sbjct: 22  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE---LEIAKELDKLSEKLDDVDEMI 81

Query: 74  SSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENCAS 125
           SSAMAADPQVQSLLSDTADIWMPVITA+AD+RRKFTASVGENSE EENC S
Sbjct: 82  SSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENCGS 129

BLAST of Spg013727 vs. NCBI nr
Match: XP_022991943.1 (uncharacterized protein LOC111488434 [Cucurbita maxima])

HSP 1 Score: 183.7 bits (465), Expect = 9.5e-43
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0

Query: 14  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSEKLDDVDEMI 73
           VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   +EI+KELDKLSEKLDDVDEMI
Sbjct: 22  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE---LEISKELDKLSEKLDDVDEMI 81

Query: 74  SSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENC 123
           SSAMAADPQVQSLLSDTADIWMPVITA+AD+RRKFTASVGENSE EENC
Sbjct: 82  SSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENC 127

BLAST of Spg013727 vs. NCBI nr
Match: XP_038899531.1 (uncharacterized protein LOC120086812 [Benincasa hispida])

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-42
Identity = 103/120 (85.83%), Postives = 109/120 (90.83%), Query Frame = 0

Query: 5   QLHHPLWKLVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSE 64
           QL   L   VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   +EIAKELDKLSE
Sbjct: 67  QLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE---LEIAKELDKLSE 126

Query: 65  KLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENCAS 124
           KLD+VDEMISSAMAADPQVQSLLSDTADIWMPVITA+AD+RR FTAS+GENSE EENCA+
Sbjct: 127 KLDNVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRNFTASIGENSETEENCAN 183

BLAST of Spg013727 vs. ExPASy TrEMBL
Match: A0A6J1GPL7 (uncharacterized protein LOC111455983 OS=Cucurbita moschata OX=3662 GN=LOC111455983 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.3e-44
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 0

Query: 14  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSEKLDDVDEMI 73
           VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   +EIAKELDKLSEKLDDVDEMI
Sbjct: 22  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE---LEIAKELDKLSEKLDDVDEMI 81

Query: 74  SSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENCAS 125
           SSAMAADPQVQSLLSDTADIWMPVITA+AD+RRKFTASVGENSE EENC S
Sbjct: 82  SSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENCGS 129

BLAST of Spg013727 vs. ExPASy TrEMBL
Match: A0A6J1JXP7 (uncharacterized protein LOC111488434 OS=Cucurbita maxima OX=3661 GN=LOC111488434 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.6e-43
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0

Query: 14  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSEKLDDVDEMI 73
           VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   +EI+KELDKLSEKLDDVDEMI
Sbjct: 22  VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE---LEISKELDKLSEKLDDVDEMI 81

Query: 74  SSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENC 123
           SSAMAADPQVQSLLSDTADIWMPVITA+AD+RRKFTASVGENSE EENC
Sbjct: 82  SSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGENSETEENC 127

BLAST of Spg013727 vs. ExPASy TrEMBL
Match: A0A6J1KTB9 (uncharacterized protein LOC111498046 OS=Cucurbita maxima OX=3661 GN=LOC111498046 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.1e-42
Identity = 103/120 (85.83%), Postives = 106/120 (88.33%), Query Frame = 0

Query: 5   QLHHPLWKLVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSE 64
           QL   L   VESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE   ME+AKELDKLSE
Sbjct: 13  QLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDE---MELAKELDKLSE 72

Query: 65  KLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENCAS 124
           KLDDVDEMISSAMAADPQVQSLLS TADIWMPVITA+ DDRRKFTAS GENSE E+NCAS
Sbjct: 73  KLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGENSETEKNCAS 129

BLAST of Spg013727 vs. ExPASy TrEMBL
Match: A0A0A0KBJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.3e-41
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = 0

Query: 5   QLHHPLWKLVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSE 64
           QL   L   VESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE   +EIAKELDKLSE
Sbjct: 13  QLLANLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDE---LEIAKELDKLSE 72

Query: 65  KLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENCAS 124
           KLD+VDEMISSAMAADPQVQSLLSDTADIWMPVITA+AD+RR FT SVGENSE E NC S
Sbjct: 73  KLDNVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRNFTPSVGENSETEANCES 129

BLAST of Spg013727 vs. ExPASy TrEMBL
Match: A0A6J1H914 (uncharacterized protein LOC111461159 OS=Cucurbita moschata OX=3662 GN=LOC111461159 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.8e-40
Identity = 102/121 (84.30%), Postives = 106/121 (87.60%), Query Frame = 0

Query: 5   QLHHPLWKLVESLTNQEEVELRTKIEAL-GLEVTKVPSKSLKQLDEVSLMEIAKELDKLS 64
           QL   L   VESLTNQEEVELR KIEAL GLEVTKVPSKSLKQLDE   ME+AKELDKLS
Sbjct: 13  QLLASLLHQVESLTNQEEVELRMKIEALFGLEVTKVPSKSLKQLDE---MELAKELDKLS 72

Query: 65  EKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSEAEENCA 124
           EKLDDV+EMISSAMAADPQVQSLLS TADIWMPVITA+ DDRRKFTAS GENSE E+NCA
Sbjct: 73  EKLDDVNEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGENSETEKNCA 130

BLAST of Spg013727 vs. TAIR 10
Match: AT2G44360.1 (unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 141.0 bits (354), Expect = 6.6e-34
Identity = 81/113 (71.68%), Postives = 95/113 (84.07%), Query Frame = 0

Query: 5   QLHHPLWKLVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDEVSLMEIAKELDKLSE 64
           QL   L + VESLTN EEVELR+KIEALGLEVTKVPSKS + L+EV   EIAKELDKLS 
Sbjct: 12  QLLSGLLQQVESLTNTEEVELRSKIEALGLEVTKVPSKSAQHLNEV---EIAKELDKLSA 71

Query: 65  KLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITATADDRRKFTASVGENSE 118
           KLDDVDEMISSA+A+DPQVQ+LLS TAD+WMPVITA A++R  FTAS+ ++ +
Sbjct: 72  KLDDVDEMISSAIASDPQVQTLLSGTADVWMPVITAGAEERLNFTASLADDDD 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7014211.11.9e-4695.50hypothetical protein SDJN02_24386 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7025681.15.0e-4487.50hypothetical protein SDJN02_12179, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022953424.11.9e-4392.79uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 unchar... [more]
XP_022991943.19.5e-4392.66uncharacterized protein LOC111488434 [Cucurbita maxima][more]
XP_038899531.12.1e-4285.83uncharacterized protein LOC120086812 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GPL79.3e-4492.79uncharacterized protein LOC111455983 OS=Cucurbita moschata OX=3662 GN=LOC1114559... [more]
A0A6J1JXP74.6e-4392.66uncharacterized protein LOC111488434 OS=Cucurbita maxima OX=3661 GN=LOC111488434... [more]
A0A6J1KTB95.1e-4285.83uncharacterized protein LOC111498046 OS=Cucurbita maxima OX=3661 GN=LOC111498046... [more]
A0A0A0KBJ83.3e-4185.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1[more]
A0A6J1H9144.8e-4084.30uncharacterized protein LOC111461159 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
Match NameE-valueIdentityDescription
AT2G44360.16.6e-3471.68unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..79
NoneNo IPR availablePANTHERPTHR37727ECOTROPIC VIRAL INTEGRATION SITE PROTEINcoord: 5..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg013727.1Spg013727.1mRNA