Spg013721 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013721
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L38
Location	scaffold3: 37713920 .. 37715508 (-)
RNA-Seq Expression	Spg013721
Synteny	Spg013721

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACGCTATCCGTCCCTTTTCAAACCAGCAATCTTTGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTATTTCTGCAATGCCTGTATGTCCTACTGGTCTCTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAATTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGTTTTCAATTCTTTATCCTCGAGTTGTTTAATATCATCATCATTAGTTTTCAGTTCGACCACATTTATATATCAGTTGGGAAAATGGCACCAACTCCAAAAAATCGTCACCTAGTTTATAACTTGCCTATTATCAAAGAAAAAAAGAATAAATAAATAAAAGAATTTGATGAGTGTGGTCAAGGAATTGTAATCAGTTACATGCTTCTGCTTCTGTTTTGTTGAGTGTTATGGGGTAGGTTTTATGCTAATTAGATTTTCAATTCAAAAGATTCTCTATGGAGACTGCATTTAGAGGTGTTCTTGACTCCATAAAATCAATGTATGAACGGGTAGGGTTGGGCTGACCATCTGTGAACATGACCTGTAGGCTAAGTTTAGCTCACTCTATTTTGTTTCCATCCCTACTTTTACAGCATAACATTTGATAAGGCTTAGTTAAAAGTTTCGTTACTTAGTTTTTAGTTTAACAAATATGGAGGTTTGAAATTGAAAGTGCAATCTTAGATAAAGGTAATACATTATTCTCCACATAATTATGTGTAGAATGGTAAATAAAAGGTAAATATTGGATTTTGCTTATTTTAAAAAACAATTTAAAAATTTGTGTTTTGCCCCCATTAAAATCTTGATGATGCCCAGCCTAAGGAATTCCTATAAATAAGAAATTATAAGAATTAGGGTTTGTGCTTCCACAATCAGAAGTACACAACATTCTCAGTTCTTCGACAATGGTACCCACTCAAACTCTAATTCCTAATTTCATTGGATTTTCTTCAATCGATCTTTTAATTCTTGTTTTCATTTTTGCCATAGCATTAGGGTTTTTCTAGTGTACATGTTATTACTCTTGCCATTTGAGTTCTGCCTAAGCTCTCTGTTTTTCGCTGCTGTTGATTTCTTGGCTCCAAGAGAGTCGTCTGTAAAGTGTCAGGATCTATTGCTTCATATCATTGGAAGATTCTGTATTTTTACCCTTGGATTTGGCTAGTTTGATTTAGATGTGATGTGATTGGTTAAGGTCTAGGGGTATTCAAGTAACACTTTGAGATGCAGATTTTCCTTCTTTAAATTCTGTGACTGTTGTATGGTCTCACTCATTTGCATATCTTGTGTTTTTTGTTATGTTATAATCAATTCTTAGCCTTTTGTTTTATATTCCGATTCACAGCCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTTTTTGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

mRNA sequence

ATGGCTTCCACGCTATCCGTCCCTTTTCAAACCAGCAATCTTTGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTATTTCTGCAATGCCTGTATGTCCTACTGGTCTCTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAATTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAACCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTTTTTGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

Coding sequence (CDS)

ATGGCTTCCACGCTATCCGTCCCTTTTCAAACCAGCAATCTTTGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTATTTCTGCAATGCCTGTATGTCCTACTGGTCTCTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAATTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAACCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTTTTTGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

Protein sequence

MASTLSVPFQTSNLWSTFLGEKNGFSISAMPVCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Homology

[Close]

BLAST of Spg013721 vs. NCBI nr
Match: MQL76196.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-27
Identity = 72/108 (66.67%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 32  VCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQD-------LKPKQIHEIKDFLLTA 91
           +C + L+  +I   +   G++  Q P    I L   D       L+PKQIHEIKDFLLTA
Sbjct: 1   MCLSWLIMDSINAVKLECGRRSPQFPYVAIICLLLTDAVRSCVSLQPKQIHEIKDFLLTA 60

Query: 92  RRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG 133
           RRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Sbjct: 61  RRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG 108

[Close]

BLAST of Spg013721 vs. NCBI nr
Match: PKA55937.1 (60S ribosomal protein L38 [Apostasia shenzhenica])

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-26
Identity = 77/136 (56.62%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 1   MASTLSVPFQTSNLWSTFLGEKN----GFSISAMPVCPTGLLRKTIECKESRIGKQPIQL 60
           MAS +S+    S L S +  + N    GF  S + V  +      ++     I   P Q+
Sbjct: 1   MASLVSIALSWSKLPSQYETKPNSDLQGFFASRVVVLASKKSAAMLKQIHESIDCSPKQI 60

Query: 61  PSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCV 120
             ++       D  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+KYLYTLCV
Sbjct: 61  HESI-------DCSPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCAKYLYTLCV 120

Query: 121 FDSEKADKLKQSLPPG 133
           FDSEKADKLKQSLPPG
Sbjct: 121 FDSEKADKLKQSLPPG 129

[Close]

BLAST of Spg013721 vs. NCBI nr
Match: KAG0458562.1 (hypothetical protein HPP92_023719 [Vanilla planifolia] >KAG0460299.1 hypothetical protein HPP92_023427 [Vanilla planifolia])

HSP 1 Score: 128.3 bits (321), Expect = 5.0e-26
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 68  DLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 127
           D KPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ
Sbjct: 21  DNKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 80

Query: 128 SLPPG 133
           SLPPG
Sbjct: 81  SLPPG 85

[Close]

BLAST of Spg013721 vs. NCBI nr
Match: KAG0460291.1 (hypothetical protein HPP92_023419 [Vanilla planifolia])

HSP 1 Score: 128.3 bits (321), Expect = 5.0e-26
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 68  DLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 127
           D KPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ
Sbjct: 21  DNKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 80

Query: 128 SLPPG 133
           SLPPG
Sbjct: 81  SLPPG 85

[Close]

BLAST of Spg013721 vs. NCBI nr
Match: KAG5530677.1 (hypothetical protein RHGRI_025592 [Rhododendron griersonianum])

HSP 1 Score: 127.5 bits (319), Expect = 8.6e-26
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 61  TITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSE 120
           +++L   + +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSE
Sbjct: 8   SLSLSLSNAQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSE 67

Query: 121 KADKLKQSLPPG 133
           KADKLKQSLPPG
Sbjct: 68  KADKLKQSLPPG 79

[Close]

BLAST of Spg013721 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.6e-27
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 71  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 130
           PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 61

Query: 131 PG 133
           PG
Sbjct: 62  PG 63

[Close]

BLAST of Spg013721 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.4e-25
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 71  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 130
           PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLP
Sbjct: 2   PKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLP 61

Query: 131 PG 133
           PG
Sbjct: 62  PG 63

[Close]

BLAST of Spg013721 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.2e-23
Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 71  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 130
           PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLP
Sbjct: 2   PKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLP 61

Query: 131 PG 133
           PG
Sbjct: 62  PG 63

[Close]

BLAST of Spg013721 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-21
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 71  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 130
           P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLP
Sbjct: 2   PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 61

Query: 131 PG 133
           PG
Sbjct: 62  PG 63

[Close]

BLAST of Spg013721 vs. ExPASy Swiss-Prot
Match: P63173 (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-21
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 71  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 130
           P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLP
Sbjct: 2   PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 61

Query: 131 PG 133
           PG
Sbjct: 62  PG 63

[Close]

BLAST of Spg013721 vs. ExPASy TrEMBL
Match: A0A2I0AK66 (60S ribosomal protein L38 OS=Apostasia shenzhenica OX=1088818 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.9e-27
Identity = 77/136 (56.62%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 1   MASTLSVPFQTSNLWSTFLGEKN----GFSISAMPVCPTGLLRKTIECKESRIGKQPIQL 60
           MAS +S+    S L S +  + N    GF  S + V  +      ++     I   P Q+
Sbjct: 1   MASLVSIALSWSKLPSQYETKPNSDLQGFFASRVVVLASKKSAAMLKQIHESIDCSPKQI 60

Query: 61  PSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCV 120
             ++       D  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+KYLYTLCV
Sbjct: 61  HESI-------DCSPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCAKYLYTLCV 120

Query: 121 FDSEKADKLKQSLPPG 133
           FDSEKADKLKQSLPPG
Sbjct: 121 FDSEKADKLKQSLPPG 129

[Close]

BLAST of Spg013721 vs. ExPASy TrEMBL
Match: B9RM38 (60S ribosomal protein L38, putative OS=Ricinus communis OX=3988 GN=RCOM_1077580 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.2e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 68  DLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 127
           +L+PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ
Sbjct: 8   NLQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 67

Query: 128 SLPPG 133
           SLPPG
Sbjct: 68  SLPPG 72

[Close]

BLAST of Spg013721 vs. ExPASy TrEMBL
Match: A0A4S8J6L6 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb11t24060 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.2e-26
Identity = 66/79 (83.54%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 54  IQLPSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYT 113
           I  PS  T+   G   +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+KYLYT
Sbjct: 19  IYKPSQQTLFSSGS--RPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCAKYLYT 78

Query: 114 LCVFDSEKADKLKQSLPPG 133
           LCVFDSEKADKLKQSLPPG
Sbjct: 79  LCVFDSEKADKLKQSLPPG 95

[Close]

BLAST of Spg013721 vs. ExPASy TrEMBL
Match: A0A438CVC8 (60S ribosomal protein L38 OS=Vitis vinifera OX=29760 GN=RPL38A_3 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 69  LKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 128
           L+PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS
Sbjct: 15  LQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 74

Query: 129 LPPG 133
           LPPG
Sbjct: 75  LPPG 78

[Close]

BLAST of Spg013721 vs. ExPASy TrEMBL
Match: A0A438GMB0 (60S ribosomal protein L38 OS=Vitis vinifera OX=29760 GN=RPL38A_1 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 69  LKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 128
           L+PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS
Sbjct: 15  LQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 74

Query: 129 LPPG 133
           LPPG
Sbjct: 75  LPPG 78

[Close]

BLAST of Spg013721 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 71  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 130
           PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 61

Query: 131 PG 133
           PG
Sbjct: 62  PG 63

[Close]

BLAST of Spg013721 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-28
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 71  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 130
           PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 61

Query: 131 PG 133
           PG
Sbjct: 62  PG 63

[Close]

BLAST of Spg013721 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 81.6 bits (200), Expect = 5.0e-16
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 1  MASTLSVPFQTSNLWSTFLGEKNGFSISAMPVCPTGLLRKTIECKESRIGKQPIQLPSNV 60
          MAS+L   FQ     S FLG++N F +S+ P    G   KTIECKESRIGKQPI +PSNV
Sbjct: 1  MASSLVSSFQPR---SAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 60

Query: 61 TITLQGQDLKPK 73
          TI L+GQDLK K
Sbjct: 61 TIALEGQDLKVK 69

The following BLAST results are available for this feature:

BLAST of Spg013721 vs. NCBI nr


Match Name	E-value	Identity	Description
MQL76196.1	3.5e-27	66.67	hypothetical protein [Colocasia esculenta]	[more]
PKA55937.1	1.0e-26	56.62	60S ribosomal protein L38 [Apostasia shenzhenica]	[more]
KAG0458562.1	5.0e-26	98.46	hypothetical protein HPP92_023719 [Vanilla planifolia] >KAG0460299.1 hypothetica...	[more]
KAG0460291.1	5.0e-26	98.46	hypothetical protein HPP92_023419 [Vanilla planifolia]	[more]
KAG5530677.1	8.6e-26	87.50	hypothetical protein RHGRI_025592 [Rhododendron griersonianum]	[more]

BLAST of Spg013721 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22860	3.6e-27	95.16	60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1	[more]
P46291	4.4e-25	90.32	60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1	[more]
Q95V84	3.2e-23	85.48	60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1	[more]
Q32PB9	5.1e-21	79.03	60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4	[more]
P63173	5.1e-21	79.03	60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2	[more]

BLAST of Spg013721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I0AK66	4.9e-27	56.62	60S ribosomal protein L38 OS=Apostasia shenzhenica OX=1088818 GN=RPL38A PE=3 SV=...	[more]
B9RM38	4.2e-26	96.92	60S ribosomal protein L38, putative OS=Ricinus communis OX=3988 GN=RCOM_1077580 ...	[more]
A0A4S8J6L6	4.2e-26	83.54	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb11t24060 PE=3 SV=...	[more]
A0A438CVC8	5.4e-26	98.44	60S ribosomal protein L38 OS=Vitis vinifera OX=29760 GN=RPL38A_3 PE=3 SV=1	[more]
A0A438GMB0	5.4e-26	98.44	60S ribosomal protein L38 OS=Vitis vinifera OX=29760 GN=RPL38A_1 PE=3 SV=1	[more]

BLAST of Spg013721 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43460.1	2.6e-28	95.16	Ribosomal L38e protein family	[more]
AT3G59540.1	2.6e-28	95.16	Ribosomal L38e protein family	[more]
AT1G05190.1	5.0e-16	59.72	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 71..132 e-value: 2.3E-31 score: 107.7
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 65..132
IPR038464	Ribosomal protein L38e superfamily	GENE3D	3.30.720.90		coord: 70..132 e-value: 1.4E-31 score: 110.4
None	No IPR available	PANTHER	PTHR10965:SF17	BNACNNG77070D PROTEIN	coord: 65..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013721.1	Spg013721.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022618	ribonucleoprotein complex assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome