Spg013649 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg013649
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 31608646 .. 31609005 (+)
RNA-Seq ExpressionSpg013649
SyntenySpg013649
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGACGGGAAGCAGCTCGCGTCGTCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGGTGCCGGAAAAACGCCAGAGCCAATAATCTTTTCGAAGCCATTGCCAAAGCGAGTATCCATGGAGCCGGTTCTGTTTCTCAGATCGAAGAAGACGGAGTCGTACGGGTTAAGATTGTCGTGAAGAAGACAGATTTGGCTCAATTTCTCGAAGCCATGGGCGGCGGAGGAGCGGCGGCGGTCTCCGTCGAACAGCGGTTGGCTCTTGTGAGACGAAAGCAACTTCTCAGAGCGAAACTAGCGGCGGCGACATGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATTCGATCTGA

mRNA sequence

ATGATCGACGGGAAGCAGCTCGCGTCGTCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGGTGCCGGAAAAACGCCAGAGCCAATAATCTTTTCGAAGCCATTGCCAAAGCGAGTATCCATGGAGCCGGTTCTGTTTCTCAGATCGAAGAAGACGGAGTCGTACGGGTTAAGATTGTCGTGAAGAAGACAGATTTGGCTCAATTTCTCGAAGCCATGGGCGGCGGAGGAGCGGCGGCGGTCTCCGTCGAACAGCGGTTGGCTCTTGTGAGACGAAAGCAACTTCTCAGAGCGAAACTAGCGGCGGCGACATGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATTCGATCTGA

Coding sequence (CDS)

ATGATCGACGGGAAGCAGCTCGCGTCGTCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGGTGCCGGAAAAACGCCAGAGCCAATAATCTTTTCGAAGCCATTGCCAAAGCGAGTATCCATGGAGCCGGTTCTGTTTCTCAGATCGAAGAAGACGGAGTCGTACGGGTTAAGATTGTCGTGAAGAAGACAGATTTGGCTCAATTTCTCGAAGCCATGGGCGGCGGAGGAGCGGCGGCGGTCTCCGTCGAACAGCGGTTGGCTCTTGTGAGACGAAAGCAACTTCTCAGAGCGAAACTAGCGGCGGCGACATGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATTCGATCTGA

Protein sequence

MIDGKQLASSNGAFRRLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIVVKKTDLAQFLEAMGGGGAAAVSVEQRLALVRRKQLLRAKLAAATWSPALQSIPEEIDSI
Homology
BLAST of Spg013649 vs. NCBI nr
Match: KAA0025124.1 (hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK19366.1 hypothetical protein E5676_scaffold3037G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 96/128 (75.00%), Postives = 106/128 (82.81%), Query Frame = 0

Query: 1   MIDGKQLASSNGAFRRLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIV 60
           MI+GKQ+ S NG FRRLFRARCRK+A+AN L EAIAKAS  G G VS  EE+GVVR+K+V
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQFLEAMGGGG----------AAAVSVEQRLALVRRKQLLRAKLAAATWSPALQ 119
           VKKTDLAQ LEAMGGGG          AA+VS+EQRLA+VRRKQLLRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

BLAST of Spg013649 vs. NCBI nr
Match: XP_023511743.1 (uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 97/124 (78.23%), Postives = 104/124 (83.87%), Query Frame = 0

Query: 1   MIDGKQLASSNGAFRRLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIV 60
           MIDGKQ AS NGAFRRLFRAR RKNA+A+NL EAIAK S  G G VSQ EEDGVVR+K+V
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VKKTDLAQFLEAMGGGGA------AAVSVEQRLALVRRKQLLRAKLAAATWSPALQSIPE 119
           VKKTDLAQ LEAM GGG       A+VSVEQRLA++RRKQ LRAKLAAATWSPALQSIPE
Sbjct: 61  VKKTDLAQVLEAMAGGGGGGGVAPASVSVEQRLAIMRRKQFLRAKLAAATWSPALQSIPE 120

BLAST of Spg013649 vs. NCBI nr
Match: KGN43274.1 (hypothetical protein Csa_020212 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-37
Identity = 91/125 (72.80%), Postives = 102/125 (81.60%), Query Frame = 0

Query: 1   MIDGKQLASSNGAFRRLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIV 60
           MI+GKQ+AS NG FRRLFRARCRK+A+AN L EAIAKAS  GAG VS  EE+GVVR+K+V
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQFLEAMGGG-------GAAAVSVEQRLALVRRKQLLRAKLAAATWSPALQSIP 119
           VKKTDL Q LEAMGGG         A+VS+E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

BLAST of Spg013649 vs. NCBI nr
Match: KAG6572129.1 (hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-36
Identity = 91/120 (75.83%), Postives = 99/120 (82.50%), Query Frame = 0

Query: 1   MIDGKQLASSNGAFRRLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIV 60
           MIDGKQ AS NGAFRRLFRAR RKNA+A+NL EAIAK S  G G VSQ EEDGVVR+K+V
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VKKTDLAQFLEAMGGGGA------AAVSVEQRLALVRRKQLLRAKLAAATWSPALQSIPE 115
           VKKTDLAQ LEA+ GGG       A+VSVE RLA++RRKQ LRAKLAAATWSPALQSIPE
Sbjct: 61  VKKTDLAQVLEALAGGGGGGGVAPASVSVEHRLAIMRRKQFLRAKLAAATWSPALQSIPE 120

BLAST of Spg013649 vs. NCBI nr
Match: OAY52280.1 (hypothetical protein MANES_04G070500v8 [Manihot esculenta])

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-14
Identity = 61/121 (50.41%), Postives = 78/121 (64.46%), Query Frame = 0

Query: 8   ASSNGAFRRLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIVVKKTDLA 67
           ASS     R  RAR  ++ R NNL E+IA+A  +G   VSQ+ EDGVVR+K++V+K DL 
Sbjct: 10  ASSPKREIRSLRARNHRSLR-NNLLESIAQA--NGGSVVSQVNEDGVVRMKLLVRKQDLR 69

Query: 68  QFLEAMGGGGA--------AAVSVEQRLALVRRKQLLRAKLAA-----ATWSPALQSIPE 116
           Q LE M G G         +++SVEQRL L+R+KQLLRA  AA      +W+P LQSIPE
Sbjct: 70  QMLEVMRGHGKNISQQQSFSSLSVEQRLNLLRKKQLLRANAAAKESRRRSWTPQLQSIPE 127

BLAST of Spg013649 vs. ExPASy TrEMBL
Match: A0A5A7SHL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00200 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.0e-40
Identity = 96/128 (75.00%), Postives = 106/128 (82.81%), Query Frame = 0

Query: 1   MIDGKQLASSNGAFRRLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIV 60
           MI+GKQ+ S NG FRRLFRARCRK+A+AN L EAIAKAS  G G VS  EE+GVVR+K+V
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQFLEAMGGGG----------AAAVSVEQRLALVRRKQLLRAKLAAATWSPALQ 119
           VKKTDLAQ LEAMGGGG          AA+VS+EQRLA+VRRKQLLRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

BLAST of Spg013649 vs. ExPASy TrEMBL
Match: A0A0A0K2L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37
Identity = 91/125 (72.80%), Postives = 102/125 (81.60%), Query Frame = 0

Query: 1   MIDGKQLASSNGAFRRLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIV 60
           MI+GKQ+AS NG FRRLFRARCRK+A+AN L EAIAKAS  GAG VS  EE+GVVR+K+V
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQFLEAMGGG-------GAAAVSVEQRLALVRRKQLLRAKLAAATWSPALQSIP 119
           VKKTDL Q LEAMGGG         A+VS+E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

BLAST of Spg013649 vs. ExPASy TrEMBL
Match: A0A7N2N056 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.9e-15
Identity = 56/117 (47.86%), Postives = 79/117 (67.52%), Query Frame = 0

Query: 16  RLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIVVKKTDLAQFLEAMGG 75
           R FRA+ +KN+R++ L   +   +++G G VS IE+DGVVR+KIVVKK DL Q LE MGG
Sbjct: 16  RQFRAQNQKNSRSDMLETVV---NVNGGGVVSCIEKDGVVRMKIVVKKQDLTQMLEVMGG 75

Query: 76  GGAA------------AVSVEQRLALVRRKQLLRA----KLAAATWSPALQSIPEEI 117
           GG              ++S EQRL L+++K +LRA    + ++++WSPALQSIPEE+
Sbjct: 76  GGGGKSKAHLQPSIMPSLSAEQRLNLLQKKHVLRANTTKESSSSSWSPALQSIPEEL 129

BLAST of Spg013649 vs. ExPASy TrEMBL
Match: A0A2N9HB17 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39448 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.1e-15
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 19  RARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIVVKKTDLAQFLEAMGGGG- 78
           RAR  KN+R N L   +   +++G G VS  EEDGVVR+KI+VKK DL Q LE MGGGG 
Sbjct: 19  RARNHKNSRTNILENVV---NVNGGGVVSCYEEDGVVRMKIIVKKQDLTQMLEVMGGGGK 78

Query: 79  ---------AAAVSVEQRLALVRRKQLLRAKLA----AATWSPALQSIPEEI 117
                      ++S EQRL L+++K LLRA       +++WSPALQSIPEE+
Sbjct: 79  NKAHHQPSITPSLSAEQRLNLLQKKHLLRANTTKESWSSSWSPALQSIPEEL 127

BLAST of Spg013649 vs. ExPASy TrEMBL
Match: A0A2C9W2T4 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G070500 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.3e-14
Identity = 61/121 (50.41%), Postives = 78/121 (64.46%), Query Frame = 0

Query: 8   ASSNGAFRRLFRARCRKNARANNLFEAIAKASIHGAGSVSQIEEDGVVRVKIVVKKTDLA 67
           ASS     R  RAR  ++ R NNL E+IA+A  +G   VSQ+ EDGVVR+K++V+K DL 
Sbjct: 10  ASSPKREIRSLRARNHRSLR-NNLLESIAQA--NGGSVVSQVNEDGVVRMKLLVRKQDLR 69

Query: 68  QFLEAMGGGGA--------AAVSVEQRLALVRRKQLLRAKLAA-----ATWSPALQSIPE 116
           Q LE M G G         +++SVEQRL L+R+KQLLRA  AA      +W+P LQSIPE
Sbjct: 70  QMLEVMRGHGKNISQQQSFSSLSVEQRLNLLRKKQLLRANAAAKESRRRSWTPQLQSIPE 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025124.11.2e-3975.00hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK1936... [more]
XP_023511743.11.2e-3978.23uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo][more]
KGN43274.12.6e-3772.80hypothetical protein Csa_020212 [Cucumis sativus][more]
KAG6572129.11.7e-3675.83hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sorori... [more]
OAY52280.18.9e-1450.41hypothetical protein MANES_04G070500v8 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SHL76.0e-4075.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K2L81.2e-3772.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1[more]
A0A7N2N0563.9e-1547.86Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A2N9HB175.1e-1550.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39448 PE=4 SV=1[more]
A0A2C9W2T44.3e-1450.41Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G070500 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 11..116
NoneNo IPR availablePANTHERPTHR33148:SF4OS02G0667300 PROTEINcoord: 11..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg013649.1Spg013649.1mRNA