Spg013645 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg013645
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionKinesin heavy chain-like
Locationscaffold3: 37840372 .. 37841913 (+)
RNA-Seq ExpressionSpg013645
SyntenySpg013645
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAGATTTTCTCCTAAAATATAGGGAATTAGAGTATTCCGAGTTGGGTTTCTCTACTCGGATTGGGAAAGTTGATGCGACTCAGAAAGATGTGAAATCCTCTGAGATTTCTTCCTTTTGGGTTAGGAAAGAGAGAGAAGTGATGGATTTGAATTTCAATTCCATTTTGGTGGTTTCTAGGTTGTTTGCCCATTACTCTTGGAAGGATGTTCAACTCACTTTAGAAAATCATTTTCAAACTAGAATTTCAATTAATCCATTTATGGATGACAAAGCGTTGATTAAGATTGATGAGGGTCTTTCTTATTTGAATTTTGATGGAAAGTGGTGTCTTGTGGGTGGCCTTCATCTGAAAATTGAGCGTTGATTCAATGAAAAACATTCTCACCCGAAATTAATCAAGAGCTATGGAGGATGGATCTCTATAAAGAATTTGCCTTTAATTTATTGGAAACGACCATTTTTTAAAGTTATTGGGTAGCAGTTTGGTGGTGGTATTTCCTCTCAAACCCTTAACTTTCTTGATTGTTCAGCAGCAGTAATTGAAGTTGAGGAAAACATTTGTGGCTTCATCCCAGCAAAGGTTGATGTCAAAGATGAGAATATCATAAAAAAAATTCTTCGTTTTGGTGATATAGCATCTCTTGACCTTTCAAGTAAGTGTCATGAATCCTAGAAATTTATCCCTTAAGATTATACGAATTCAATGGACTTAAAGAGTGTTAATGAGGTTATGGAAGATGAAAGTCTCTTTTTACCAAATGAAGATGATTTGATGATGGTTATCGAGGATTCAAAGGTCTCTTCGATGTATGATAAGAATTTTAATTCAAATGGTCCTCATTTGTTAAAAGGCATTTCTTTGGATTGACATGTAGAAGTTGATTCCCTCGGTTCTAATGTAGGTTCTATGGTGTCTCCTTTACAATCGAAGCAAAGTTCGATAAAAGCCTACCCTCTACATTATTCTAGAAGAAAAGTGTTATCCTCCATCATTGATTATTCAGAGTCTAATTTAGATTCTGTTGAGGAATCTTGTGTTCATCTTTTGACTCAATCCACAAATTAGTTGGAGTCTCCAATGAAAGGTTCTAAGATGCAAGAGACTTTATAACCTACCATGAGCTTTAGTCAATCACAAGTTTCTCTTCCTAGTTCAAACATACTATTCACCAAAGGTGTAACAAGTCTCTCATCACCTAAGAAGAATCCTTCTTGTTTTGATTCTGATGGAGAATCGAATGTTAGTATGAGCAGTGTGGAGTCAATTTTTCATATTCCGGAATCAGAGTTGGTTGATCAGGTTGAAGACAATTCATTTGCTAAAGGCTTTGAAAATCTATTTGAAGATAATGAACAAGGTGTTGATAATTTCGAAGGAGTAGTTTCTCCTCAAATCTCAGCCAAATTTTCTTCTCTTATTGAGTTATGTGACTTACAAATGCGGGCAATTCCTAATTTGTCTCCAGCAATTAAAGCTGAAAGCTCTTTAGTGTTTTTCTCGTTAGCTCAGTTTTTTAATTTTCTCAGGGTTTAG

mRNA sequence

ATGGTGAGAGATTTTCTCCTAAAATATAGGGAATTAGAGTATTCCGAGTTGGGTTTCTCTACTCGGATTGGGAAAGTTGATGCGACTCAGAAAGATGTGAAATCCTCTGAGATTTCTTCCTTTTGGGTTAGGAAAGAGAGAGAAGTGATGGATTTGAATTTCAATTCCATTTTGGTGGTTTCTAGGTTGTTTGCCCATTACTCTTGGAAGGATGTTCAACTCACTTTAGAAAATCATTTTCAAACTAGAATTTCAATTAATCCATTTATGGATGACAAAGCGTTGATTAAGATTGATGAGGCAGCAGTAATTGAAGTTGAGGAAAACATTTGTGGCTTCATCCCAGCAAAGGTTGATGTCAAAGATGAGAATATCATAAAAAAAATTCTTCGTTTTGGTGATATAGCATCTCTTGACCTTTCAAGTGTAACAAGTCTCTCATCACCTAAGAAGAATCCTTCTTGTTTTGATTCTGATGGAGAATCGAATGTTAGTATGAGCAGTGTGGAGTCAATTTTTCATATTCCGGAATCAGAGTTGGTTGATCAGGTTGAAGACAATTCATTTGCTAAAGGCTTTGAAAATCTATTTGAAGATAATGAACAAGGTGTTGATAATTTCGAAGGAGTAGTTTCTCCTCAAATCTCAGCCAAATTTTCTTCTCTTATTGAGTTATGTGACTTACAAATGCGGGCAATTCCTAATTTGTCTCCAGCAATTAAAGCTGAAAGCTCTTTAGTGTTTTTCTCGTTAGCTCAGTTTTTTAATTTTCTCAGGGTTTAG

Coding sequence (CDS)

ATGGTGAGAGATTTTCTCCTAAAATATAGGGAATTAGAGTATTCCGAGTTGGGTTTCTCTACTCGGATTGGGAAAGTTGATGCGACTCAGAAAGATGTGAAATCCTCTGAGATTTCTTCCTTTTGGGTTAGGAAAGAGAGAGAAGTGATGGATTTGAATTTCAATTCCATTTTGGTGGTTTCTAGGTTGTTTGCCCATTACTCTTGGAAGGATGTTCAACTCACTTTAGAAAATCATTTTCAAACTAGAATTTCAATTAATCCATTTATGGATGACAAAGCGTTGATTAAGATTGATGAGGCAGCAGTAATTGAAGTTGAGGAAAACATTTGTGGCTTCATCCCAGCAAAGGTTGATGTCAAAGATGAGAATATCATAAAAAAAATTCTTCGTTTTGGTGATATAGCATCTCTTGACCTTTCAAGTGTAACAAGTCTCTCATCACCTAAGAAGAATCCTTCTTGTTTTGATTCTGATGGAGAATCGAATGTTAGTATGAGCAGTGTGGAGTCAATTTTTCATATTCCGGAATCAGAGTTGGTTGATCAGGTTGAAGACAATTCATTTGCTAAAGGCTTTGAAAATCTATTTGAAGATAATGAACAAGGTGTTGATAATTTCGAAGGAGTAGTTTCTCCTCAAATCTCAGCCAAATTTTCTTCTCTTATTGAGTTATGTGACTTACAAATGCGGGCAATTCCTAATTTGTCTCCAGCAATTAAAGCTGAAAGCTCTTTAGTGTTTTTCTCGTTAGCTCAGTTTTTTAATTTTCTCAGGGTTTAG

Protein sequence

MVRDFLLKYRELEYSELGFSTRIGKVDATQKDVKSSEISSFWVRKEREVMDLNFNSILVVSRLFAHYSWKDVQLTLENHFQTRISINPFMDDKALIKIDEAAVIEVEENICGFIPAKVDVKDENIIKKILRFGDIASLDLSSVTSLSSPKKNPSCFDSDGESNVSMSSVESIFHIPESELVDQVEDNSFAKGFENLFEDNEQGVDNFEGVVSPQISAKFSSLIELCDLQMRAIPNLSPAIKAESSLVFFSLAQFFNFLRV
Homology
[Close]
BLAST of Spg013645 vs. NCBI nr
Match: TYJ99818.1 (kinesin heavy chain-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-07
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 0 

Query: 34  KSSEISSFWVRKEREVMDLNFNSILVVSRLFAHYSWKDVQLTLENHFQTRISINPFMDDK 93
           + S+    WV +  EV   NF S+ +V+++FA   W+ ++ +LE +FQ +I INP   + 
Sbjct: 155 RKSDNQGQWVIRNAEVATTNFESLWIVTKVFAFDDWQMIRKSLEEYFQAKIVINPLFGEN 214

Query: 94  ALIKIDEAAV-----------------IEVEENICGFIPAKVDVKDENIIKKILRFGD 135
           A I ID+ ++                 I+V++N CGF+P+ +++ +         FGD
Sbjct: 215 AFISIDQDSIKDRICEEGKWQAMGEARIQVKQNCCGFVPSTIEITNVKRGNIFSNFGD 272

[Close]
BLAST of Spg013645 vs. NCBI nr
Match: KAA0047189.1 (hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739.1 hypothetical protein E5676_scaffold1280G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-05
Identity = 40/185 (21.62%), Postives = 73/185 (39.46%), Query Frame = 0 

Query: 21  TRIGKVDATQKDVKSSEISSFWVRKEREVMDLNFNSILVVSRLFAHYSWKDVQLTLENHF 80
           T++ ++        +++    WV +  EV+  NF ++ ++++LFA    + ++  LEN+F
Sbjct: 30  TKVAEISPCPSSNLNTDKQKQWVIRNSEVISTNFENLWIITKLFAFDDRRKIRKMLENYF 89

Query: 81  QTRISINPFMDDKALIKIDEAAV------------------------------------- 140
           Q +I INP  D+ ALI +DE ++                                     
Sbjct: 90  QAKIVINPLFDENALINLDEGSIKDLICNEGKWQVLGSFYLKFEKWDKHKYSRPLTMKGY 149

Query: 141 -----------------------IEVEENICGFIPAKVDVKDENIIKKILRFGDIASLDL 146
                                  I+V+ N+CGF+P+ +++ D       L FGD   L+ 
Sbjct: 150 GGWLKIKNLLWITGAGEPSSEARIQVKHNLCGFVPSTIEIIDPKRGNIFLNFGDFEFLNP 209

[Close]
BLAST of Spg013645 vs. ExPASy TrEMBL
Match: A0A5D3BNW8 (Kinesin heavy chain-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00200 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.7e-08
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 0 

Query: 34  KSSEISSFWVRKEREVMDLNFNSILVVSRLFAHYSWKDVQLTLENHFQTRISINPFMDDK 93
           + S+    WV +  EV   NF S+ +V+++FA   W+ ++ +LE +FQ +I INP   + 
Sbjct: 155 RKSDNQGQWVIRNAEVATTNFESLWIVTKVFAFDDWQMIRKSLEEYFQAKIVINPLFGEN 214

Query: 94  ALIKIDEAAV-----------------IEVEENICGFIPAKVDVKDENIIKKILRFGD 135
           A I ID+ ++                 I+V++N CGF+P+ +++ +         FGD
Sbjct: 215 AFISIDQDSIKDRICEEGKWQAMGEARIQVKQNCCGFVPSTIEITNVKRGNIFSNFGD 272

[Close]
BLAST of Spg013645 vs. ExPASy TrEMBL
Match: A0A5A7U128 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1280G00090 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 40/185 (21.62%), Postives = 73/185 (39.46%), Query Frame = 0 

Query: 21  TRIGKVDATQKDVKSSEISSFWVRKEREVMDLNFNSILVVSRLFAHYSWKDVQLTLENHF 80
           T++ ++        +++    WV +  EV+  NF ++ ++++LFA    + ++  LEN+F
Sbjct: 30  TKVAEISPCPSSNLNTDKQKQWVIRNSEVISTNFENLWIITKLFAFDDRRKIRKMLENYF 89

Query: 81  QTRISINPFMDDKALIKIDEAAV------------------------------------- 140
           Q +I INP  D+ ALI +DE ++                                     
Sbjct: 90  QAKIVINPLFDENALINLDEGSIKDLICNEGKWQVLGSFYLKFEKWDKHKYSRPLTMKGY 149

Query: 141 -----------------------IEVEENICGFIPAKVDVKDENIIKKILRFGDIASLDL 146
                                  I+V+ N+CGF+P+ +++ D       L FGD   L+ 
Sbjct: 150 GGWLKIKNLLWITGAGEPSSEARIQVKHNLCGFVPSTIEIIDPKRGNIFLNFGDFEFLNP 209

The following BLAST results are available for this feature:
BLAST of Spg013645 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ99818.11.6e-0728.81kinesin heavy chain-like [Cucumis melo var. makuwa][more]
KAA0047189.12.5e-0521.62hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739... [more]
BLAST of Spg013645 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg013645 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BNW87.7e-0828.81Kinesin heavy chain-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7U1281.2e-0521.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg013645 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg013645.1Spg013645.1mRNA