Spg013551 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013551
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold1: 6791849 .. 6793015 (+)
RNA-Seq Expression	Spg013551
Synteny	Spg013551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGTTAACCGTTTGTCCCACATCGATGAAGTCAAGAAGAAATGAAGCGCAGATCAGGTATAAAATGAAATCAACGGGCTTCGTTAAAACATACTTACCTGGACGGGGCTTTTGGGTGATCAAGAAGGCCCATAGCCTAGGTTGGTGACCTCCATTGCACTTAGGAGGGGTGCCCGCCTAAGGTCTGTCCAACGTGGCAGAGCCTACGTCATAATTTGTGGCAGTGGGGGCCTGCGTTCGCGCGGCCCCTACCCAAACCCTAGTACGAAACTTAAAAATATTCTAAAAAAAATCATATTATCTTCATTCTGAAAGGAATAAACATTGTTTTTTTTCTTTTTTCTATTATATTTTCTTGTTATCGGGAACATGTATATTTTTATTGTACTTTCGAATTGTTTGTATTAGGAACTATTTTCTACTTGAATCAATGCTACCTTATCATAGGCGGGCGGGACGAAACAAATCGCTTACTACAAAACGATCAAATATTGGTTACCTTCCTTCCTCTTTTCCATTCGGCTTATTTGCAGATCCTTATTACCCTAACGGCTGTCTTCACTTTTTTCTTTCTAGACCAAATTTAGCGCTTCAATCTCTTCTTCAATTTCATTCCCTCATTATCACCACTGGTAACTCGAACAATGTCTTCTTTGCTACCAAGCTCATGTCATTTTATGCCTCTCATAGGCAACCCGCATTGTCCATGCAACTGTTTCGTTTGATTCATTCCAAGGACGGATTTATTTGGAATTCCATTATCCAATCCCACTTCTCCAATGGTGATTACCTGCAGGCATTTGATTTCTATCTCCAGATGCGAGCCTCGGGTAGTTTGCCGAACCAATTTACAGTTCCCTTGGTGGTTTCCACTTGCGCGGAACTAATGATGCTCAACCATGACATGAACATTTACGGGTTGGCTTTGAAACTTGGGCTTTTTGCTGGTAATTCTGCTGTTGGTTCTTCTTTGGTTTACATGTATTCTAAATGTGGTCACCCAGAAAGTGCATCTCTTCTGTTCGATGAAATTACTGTTAAAGATGTGGTTGCTTGGACTGCCCTTGTAGTTGGGCACGTCCAGAATAATGAGAGTGAGAAGGGTTTGAAATGTCTGTATCAGATGCATAGGAATGGAGGGACCCCAAATTATAGAACATAA

mRNA sequence

ATGATGCAGTTAACCGTTTGTCCCACATCGATGAAGTCAAGAAGAAATGAAGCGCAGATCAGGTATAAAATGAAATCAACGGGCTTCGTTAAAACATACTTACCTGGACGGGGCTTTTGGGTGATCAAGAAGGCCCATAGCCTAGATCCTTATTACCCTAACGGCTGTCTTCACTTTTTTCTTTCTAGACCAAATTTAGCGCTTCAATCTCTTCTTCAATTTCATTCCCTCATTATCACCACTGGTAACTCGAACAATGTCTTCTTTGCTACCAAGCTCATGTCATTTTATGCCTCTCATAGGCAACCCGCATTGTCCATGCAACTGTTTCGTTTGATTCATTCCAAGGACGGATTTATTTGGAATTCCATTATCCAATCCCACTTCTCCAATGGTGATTACCTGCAGGCATTTGATTTCTATCTCCAGATGCGAGCCTCGGGTAGTTTGCCGAACCAATTTACAGTTCCCTTGGTGGTTTCCACTTGCGCGGAACTAATGATGCTCAACCATGACATGAACATTTACGGGTTGGCTTTGAAACTTGGGCTTTTTGCTGGTAATTCTGCTGTTGGTTCTTCTTTGGTTTACATGTATTCTAAATGTGGTCACCCAGAAAGTGCATCTCTTCTGTTCGATGAAATTACTGTTAAAGATGTGGTTGCTTGGACTGCCCTTGTAGTTGGGCACGTCCAGAATAATGAGAGTGAGAAGGGTTTGAAATGTCTGTATCAGATGCATAGGAATGGAGGGACCCCAAATTATAGAACATAA

Coding sequence (CDS)

ATGATGCAGTTAACCGTTTGTCCCACATCGATGAAGTCAAGAAGAAATGAAGCGCAGATCAGGTATAAAATGAAATCAACGGGCTTCGTTAAAACATACTTACCTGGACGGGGCTTTTGGGTGATCAAGAAGGCCCATAGCCTAGATCCTTATTACCCTAACGGCTGTCTTCACTTTTTTCTTTCTAGACCAAATTTAGCGCTTCAATCTCTTCTTCAATTTCATTCCCTCATTATCACCACTGGTAACTCGAACAATGTCTTCTTTGCTACCAAGCTCATGTCATTTTATGCCTCTCATAGGCAACCCGCATTGTCCATGCAACTGTTTCGTTTGATTCATTCCAAGGACGGATTTATTTGGAATTCCATTATCCAATCCCACTTCTCCAATGGTGATTACCTGCAGGCATTTGATTTCTATCTCCAGATGCGAGCCTCGGGTAGTTTGCCGAACCAATTTACAGTTCCCTTGGTGGTTTCCACTTGCGCGGAACTAATGATGCTCAACCATGACATGAACATTTACGGGTTGGCTTTGAAACTTGGGCTTTTTGCTGGTAATTCTGCTGTTGGTTCTTCTTTGGTTTACATGTATTCTAAATGTGGTCACCCAGAAAGTGCATCTCTTCTGTTCGATGAAATTACTGTTAAAGATGTGGTTGCTTGGACTGCCCTTGTAGTTGGGCACGTCCAGAATAATGAGAGTGAGAAGGGTTTGAAATGTCTGTATCAGATGCATAGGAATGGAGGGACCCCAAATTATAGAACATAA

Protein sequence

MMQLTVCPTSMKSRRNEAQIRYKMKSTGFVKTYLPGRGFWVIKKAHSLDPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQLFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMMLNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVVGHVQNNESEKGLKCLYQMHRNGGTPNYRT

Homology

[Close]

BLAST of Spg013551 vs. NCBI nr
Match: XP_022154319.1 (pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 [Momordica charantia] >XP_022154320.1 pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 [Momordica charantia] >XP_022154321.1 pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 364.8 bits (935), Expect = 6.2e-97
Identity = 179/210 (85.24%), Postives = 188/210 (89.52%), Query Frame = 0


Query: 48  LDPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSM 107
           LDP Y N C H FLS+  LA +SLLQFHSLIITTGNS NVFFATKLMSFYASHRQPALS 
Sbjct: 23  LDPCYLNSCFHIFLSKQFLAFKSLLQFHSLIITTGNSKNVFFATKLMSFYASHRQPALST 82

Query: 108 QLFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELM 167
            LF  IH KDGF+WNSIIQSHFSNGDYLQAF FYLQMRAS SLPNQFTVP+V+STCAELM
Sbjct: 83  HLFHSIHPKDGFLWNSIIQSHFSNGDYLQAFGFYLQMRASSSLPNQFTVPMVLSTCAELM 142

Query: 168 MLNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALV 227
           MLNH MNI+GLALKLGLF GNSAVGSSLVYMYSKCGH ESASLLFDEIT+KDVVAWTAL+
Sbjct: 143 MLNHGMNIHGLALKLGLFYGNSAVGSSLVYMYSKCGHTESASLLFDEITLKDVVAWTALI 202

Query: 228 VGHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           VGHVQNNESEKGLKCL+ MHR GG PNYRT
Sbjct: 203 VGHVQNNESEKGLKCLFDMHRYGGAPNYRT 232

[Close]

BLAST of Spg013551 vs. NCBI nr
Match: XP_038901304.1 (pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Benincasa hispida] >XP_038901305.1 pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Benincasa hispida] >XP_038901307.1 pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Benincasa hispida] >XP_038901308.1 pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Benincasa hispida] >XP_038901309.1 pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Benincasa hispida] >XP_038901310.1 pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Benincasa hispida] >XP_038901311.1 pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Benincasa hispida])

HSP 1 Score: 360.1 bits (923), Expect = 1.5e-95
Identity = 171/209 (81.82%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 49  DPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQ 108
           DP+Y N CLHFF S+ NL  QSLLQFHS IITTGNSNNVFFATKLM+FYASHRQP  S Q
Sbjct: 24  DPHYLNNCLHFFFSKQNLTFQSLLQFHSTIITTGNSNNVFFATKLMAFYASHRQPVFSTQ 83

Query: 109 LFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMM 168
           LFRLIHSKD F+WNSIIQSHFSNGDY +AFDFYLQMRAS SLPNQFTVP+VVSTCAELMM
Sbjct: 84  LFRLIHSKDKFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMM 143

Query: 169 LNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVV 228
           LNH MNI+GLALKLGLF  NSA+GSS +YMYSKCGH ESASL+F+EITVKDVVAWTAL+V
Sbjct: 144 LNHGMNIHGLALKLGLFVDNSAIGSSFIYMYSKCGHVESASLMFNEITVKDVVAWTALIV 203

Query: 229 GHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           G+VQNNES++GLKCL++MHR GGTPN++T
Sbjct: 204 GYVQNNESDRGLKCLFEMHRIGGTPNHKT 232

[Close]

BLAST of Spg013551 vs. NCBI nr
Match: XP_023513090.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.5 bits (916), Expect = 1.0e-94
Identity = 170/209 (81.34%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 49  DPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQ 108
           DP+  + CLHFF S+ NL  QSLLQFHSLIITTGNSNN FFATKLM+FYA H QPA S Q
Sbjct: 27  DPHDLSSCLHFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQ 86

Query: 109 LFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMM 168
           LFR +H KD F+WNSIIQSHFSNGDYLQAFDFYL+MRAS SLPNQFT+P+VVSTCAELMM
Sbjct: 87  LFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMM 146

Query: 169 LNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVV 228
           LNH MNI+GLALKLGLF GNSAVGSSL+YMYSKCG+ ESASL+F+EITVKDVVAWTAL++
Sbjct: 147 LNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALII 206

Query: 229 GHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           G+VQNNESEKGLKCL++MHRNG TPNYRT
Sbjct: 207 GYVQNNESEKGLKCLFEMHRNGCTPNYRT 235

[Close]

BLAST of Spg013551 vs. NCBI nr
Match: XP_022944467.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 357.5 bits (916), Expect = 1.0e-94
Identity = 170/209 (81.34%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 49  DPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQ 108
           DP+    CLHFF S+ NL+ QSLLQFHSLIITTGNSNN FFATKLM+FYA H QPA S Q
Sbjct: 27  DPHDLGSCLHFFFSKQNLSFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQ 86

Query: 109 LFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMM 168
           LFR +H KD F+WNSIIQSHFSNGDYLQAFDFYL+MRAS SLPNQFT+P+VVSTCAELMM
Sbjct: 87  LFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMM 146

Query: 169 LNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVV 228
           LNH MNI+GLALKLGLF GNSAVGSSL+YMYSKCG+ ESASL+F+EITVKDVVAWTAL++
Sbjct: 147 LNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALII 206

Query: 229 GHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           G+VQNNESEKGLKCL++MHRNG TPNYRT
Sbjct: 207 GYVQNNESEKGLKCLFEMHRNGCTPNYRT 235

[Close]

BLAST of Spg013551 vs. NCBI nr
Match: XP_008459184.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 [Cucumis melo] >XP_008459185.1 PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 355.9 bits (912), Expect = 2.9e-94
Identity = 169/209 (80.86%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 49  DPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQ 108
           DP+YPN CLH F S+P+L  QSLLQFHSLIITTGNS+NVFFATKLM+FYASHRQPA S  
Sbjct: 79  DPHYPNNCLHSFFSKPSLTFQSLLQFHSLIITTGNSDNVFFATKLMAFYASHRQPAFSTH 138

Query: 109 LFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMM 168
           LFRLIHSKD F+WNSIIQSHFSNGDY +AFDFYLQMRAS SLPNQFTVP+VVSTCAELMM
Sbjct: 139 LFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMM 198

Query: 169 LNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVV 228
            NH MNI+GL  KLGLF  NSA+GSS +YMYSKCGH ESASL+F EITVKDVVAWTAL+V
Sbjct: 199 FNHGMNIHGLTSKLGLFVSNSAIGSSFIYMYSKCGHVESASLMFSEITVKDVVAWTALIV 258

Query: 229 GHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           G+VQNNES +GLKCL++MHR GGTPNY+T
Sbjct: 259 GYVQNNESGRGLKCLFEMHRIGGTPNYKT 287

[Close]

BLAST of Spg013551 vs. ExPASy Swiss-Prot
Match: Q3E9N1 (Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E98 PE=2 SV=2)

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-49
Identity = 105/219 (47.95%), Postives = 145/219 (66.21%), Query Frame = 0


Query: 42  IKKAHSLDPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHR 101
           ++K  S    Y +  +   L   +L+L+SL + ++LIIT G S N+F A+KL+S YAS+ 
Sbjct: 14  LRKLSSSSASYVDRHISVILCDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYG 73

Query: 102 QPALSMQLFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVS 161
           +P LS ++F L+  +D F+WNSII++HFSNGDY ++  F+  M  SG  P+ FT P+VVS
Sbjct: 74  KPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVS 133

Query: 162 TCAELMMLNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVV 221
            CAEL+  +    ++GL LK G F  N+AVG+S VY YSKCG  + A L+FDE+  +DVV
Sbjct: 134 ACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVV 193

Query: 222 AWTALVVGHVQNNESEKGLKCLYQMHRNGG---TPNYRT 258
           AWTA++ GHVQN ESE GL  L +MH  G     PN RT
Sbjct: 194 AWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRT 232

[Close]

BLAST of Spg013551 vs. ExPASy Swiss-Prot
Match: Q9SS60 (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 62/188 (32.98%), Postives = 112/188 (59.57%), Query Frame = 0


Query: 68  LQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQLFRLIH-SKDGFIWNSIIQ 127
           L  L + H+L+I+ G  ++ FF+ KL+  Y+  R+PA S+ +FR +  +K+ ++WNSII+
Sbjct: 20  LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIR 79

Query: 128 SHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMMLNHDMNIYGLALKLGLFA 187
           +   NG + +A +FY ++R S   P+++T P V+  CA L        +Y   L +G F 
Sbjct: 80  AFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMG-FE 139

Query: 188 GNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVVGHVQNNESEKGLKCLYQM 247
            +  VG++LV MYS+ G    A  +FDE+ V+D+V+W +L+ G+  +   E+ L+  +++
Sbjct: 140 SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHEL 199

Query: 248 HRNGGTPN 255
             +   P+
Sbjct: 200 KNSWIVPD 206

[Close]

BLAST of Spg013551 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.7e-23
Identity = 56/182 (30.77%), Postives = 95/182 (52.20%), Query Frame = 0


Query: 73  QFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQLFRLIHSKDGFIWNSIIQSHFSNG 132
           + H  +I  G  ++V+  + L+  YA   +   S ++F  ++ +DG  WNS++  +  NG
Sbjct: 263 EIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNG 322

Query: 133 DYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMMLNHDMNIYGLALKLGLFAGNSAVG 192
            Y +A   + QM  +   P       V+  CA L  L+    ++G  L+ G F  N  + 
Sbjct: 323 RYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR-GGFGSNIFIA 382

Query: 193 SSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVVGHVQNNESEKGLKCLYQMHRNGGT 252
           S+LV MYSKCG+ ++A  +FD + V D V+WTA+++GH  +    + +    +M R G  
Sbjct: 383 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 442

Query: 253 PN 255
           PN
Sbjct: 443 PN 443

[Close]

BLAST of Spg013551 vs. ExPASy Swiss-Prot
Match: Q9SX45 (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-21
Identity = 57/185 (30.81%), Postives = 99/185 (53.51%), Query Frame = 0


Query: 73  QFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQLFRLIHSKDGFIWNSIIQSHFSNG 132
           QFH+ I+  G  ++ F    L+S Y+S      + +LF     KD   W ++I     NG
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183

Query: 133 DYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMMLNHDMNIYGLALKLGLFAGNSAVG 192
              +A  ++++M+ +G   N+ TV  V+    ++  +    +++GL L+ G    +  +G
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243

Query: 193 SSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVVGHVQNNESEKGLKCLYQMHRNGGT 252
           SSLV MY KC   + A  +FDE+  ++VV WTAL+ G+VQ+   +KG+    +M ++   
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303

Query: 253 PNYRT 258
           PN +T
Sbjct: 304 PNEKT 308

[Close]

BLAST of Spg013551 vs. ExPASy Swiss-Prot
Match: Q9FGL1 (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E103 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.3e-19
Identity = 52/174 (29.89%), Postives = 86/174 (49.43%), Query Frame = 0


Query: 73  QFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQLFRLIHSKDGFIWNSIIQSHFSNG 132
           Q H  +   G  +N   +  LM FY +      + ++F  +   D   WNS++  +  +G
Sbjct: 76  QLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKVFDEMPDPDVISWNSLVSGYVQSG 135

Query: 133 DYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMMLNHDMNIYGLALKLGLFAGNSAVG 192
            + +    +L++  S   PN+F+    ++ CA L +      I+   +KLGL  GN  VG
Sbjct: 136 RFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNVVVG 195

Query: 193 SSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVVGHVQNNESEKGLKCLYQM 247
           + L+ MY KCG  + A L+F  +  KD V+W A+V    +N + E GL   +QM
Sbjct: 196 NCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVASCSRNGKLELGLWFFHQM 249

[Close]

BLAST of Spg013551 vs. ExPASy TrEMBL
Match: A0A6J1DLQ3 (pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021614 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 3.0e-97
Identity = 179/210 (85.24%), Postives = 188/210 (89.52%), Query Frame = 0


Query: 48  LDPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSM 107
           LDP Y N C H FLS+  LA +SLLQFHSLIITTGNS NVFFATKLMSFYASHRQPALS 
Sbjct: 23  LDPCYLNSCFHIFLSKQFLAFKSLLQFHSLIITTGNSKNVFFATKLMSFYASHRQPALST 82

Query: 108 QLFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELM 167
            LF  IH KDGF+WNSIIQSHFSNGDYLQAF FYLQMRAS SLPNQFTVP+V+STCAELM
Sbjct: 83  HLFHSIHPKDGFLWNSIIQSHFSNGDYLQAFGFYLQMRASSSLPNQFTVPMVLSTCAELM 142

Query: 168 MLNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALV 227
           MLNH MNI+GLALKLGLF GNSAVGSSLVYMYSKCGH ESASLLFDEIT+KDVVAWTAL+
Sbjct: 143 MLNHGMNIHGLALKLGLFYGNSAVGSSLVYMYSKCGHTESASLLFDEITLKDVVAWTALI 202

Query: 228 VGHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           VGHVQNNESEKGLKCL+ MHR GG PNYRT
Sbjct: 203 VGHVQNNESEKGLKCLFDMHRYGGAPNYRT 232

[Close]

BLAST of Spg013551 vs. ExPASy TrEMBL
Match: A0A6J1FVR1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448916 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.8e-95
Identity = 170/209 (81.34%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 49  DPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQ 108
           DP+    CLHFF S+ NL+ QSLLQFHSLIITTGNSNN FFATKLM+FYA H QPA S Q
Sbjct: 27  DPHDLGSCLHFFFSKQNLSFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQ 86

Query: 109 LFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMM 168
           LFR +H KD F+WNSIIQSHFSNGDYLQAFDFYL+MRAS SLPNQFT+P+VVSTCAELMM
Sbjct: 87  LFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMM 146

Query: 169 LNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVV 228
           LNH MNI+GLALKLGLF GNSAVGSSL+YMYSKCG+ ESASL+F+EITVKDVVAWTAL++
Sbjct: 147 LNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALII 206

Query: 229 GHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           G+VQNNESEKGLKCL++MHRNG TPNYRT
Sbjct: 207 GYVQNNESEKGLKCLFEMHRNGCTPNYRT 235

[Close]

BLAST of Spg013551 vs. ExPASy TrEMBL
Match: A0A1S3C9K9 (pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498381 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.4e-94
Identity = 169/209 (80.86%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 49  DPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQ 108
           DP+YPN CLH F S+P+L  QSLLQFHSLIITTGNS+NVFFATKLM+FYASHRQPA S  
Sbjct: 79  DPHYPNNCLHSFFSKPSLTFQSLLQFHSLIITTGNSDNVFFATKLMAFYASHRQPAFSTH 138

Query: 109 LFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMM 168
           LFRLIHSKD F+WNSIIQSHFSNGDY +AFDFYLQMRAS SLPNQFTVP+VVSTCAELMM
Sbjct: 139 LFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMM 198

Query: 169 LNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVV 228
            NH MNI+GL  KLGLF  NSA+GSS +YMYSKCGH ESASL+F EITVKDVVAWTAL+V
Sbjct: 199 FNHGMNIHGLTSKLGLFVSNSAIGSSFIYMYSKCGHVESASLMFSEITVKDVVAWTALIV 258

Query: 229 GHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           G+VQNNES +GLKCL++MHR GGTPNY+T
Sbjct: 259 GYVQNNESGRGLKCLFEMHRIGGTPNYKT 287

[Close]

BLAST of Spg013551 vs. ExPASy TrEMBL
Match: A0A1S4E2D5 (pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498381 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.4e-94
Identity = 169/209 (80.86%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 49  DPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQ 108
           DP+YPN CLH F S+P+L  QSLLQFHSLIITTGNS+NVFFATKLM+FYASHRQPA S  
Sbjct: 34  DPHYPNNCLHSFFSKPSLTFQSLLQFHSLIITTGNSDNVFFATKLMAFYASHRQPAFSTH 93

Query: 109 LFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMM 168
           LFRLIHSKD F+WNSIIQSHFSNGDY +AFDFYLQMRAS SLPNQFTVP+VVSTCAELMM
Sbjct: 94  LFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMM 153

Query: 169 LNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVV 228
            NH MNI+GL  KLGLF  NSA+GSS +YMYSKCGH ESASL+F EITVKDVVAWTAL+V
Sbjct: 154 FNHGMNIHGLTSKLGLFVSNSAIGSSFIYMYSKCGHVESASLMFSEITVKDVVAWTALIV 213

Query: 229 GHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           G+VQNNES +GLKCL++MHR GGTPNY+T
Sbjct: 214 GYVQNNESGRGLKCLFEMHRIGGTPNYKT 242

[Close]

BLAST of Spg013551 vs. ExPASy TrEMBL
Match: A0A6J1JGK6 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484200 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.2e-93
Identity = 167/209 (79.90%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 49  DPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQ 108
           DP+  + CL FF S+ NL  QSLLQFHSL+ITTGNSNN FFATKLM+FYA H QPA S Q
Sbjct: 27  DPHDLSSCLQFFFSKQNLTFQSLLQFHSLVITTGNSNNAFFATKLMAFYACHGQPAFSTQ 86

Query: 109 LFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMM 168
           LFR +H KD F+WNSIIQSHFSNGDYLQAFDFYL+MRAS SLPNQFT+P+VVSTCAELMM
Sbjct: 87  LFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMM 146

Query: 169 LNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVV 228
           LNH MNI+GLALKLGLF GNSAVGSSL+YMYSKCG+ ESASL+F++ITVKDVVAWTAL++
Sbjct: 147 LNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNDITVKDVVAWTALII 206

Query: 229 GHVQNNESEKGLKCLYQMHRNGGTPNYRT 258
           G+VQNNESEKGLKCL++MHRNG TPNYRT
Sbjct: 207 GYVQNNESEKGLKCLFEMHRNGCTPNYRT 235

[Close]

BLAST of Spg013551 vs. TAIR 10
Match: AT4G39952.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 9.4e-51
Identity = 105/219 (47.95%), Postives = 145/219 (66.21%), Query Frame = 0


Query: 42  IKKAHSLDPYYPNGCLHFFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHR 101
           ++K  S    Y +  +   L   +L+L+SL + ++LIIT G S N+F A+KL+S YAS+ 
Sbjct: 14  LRKLSSSSASYVDRHISVILCDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYG 73

Query: 102 QPALSMQLFRLIHSKDGFIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVS 161
           +P LS ++F L+  +D F+WNSII++HFSNGDY ++  F+  M  SG  P+ FT P+VVS
Sbjct: 74  KPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVS 133

Query: 162 TCAELMMLNHDMNIYGLALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVV 221
            CAEL+  +    ++GL LK G F  N+AVG+S VY YSKCG  + A L+FDE+  +DVV
Sbjct: 134 ACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVV 193

Query: 222 AWTALVVGHVQNNESEKGLKCLYQMHRNGG---TPNYRT 258
           AWTA++ GHVQN ESE GL  L +MH  G     PN RT
Sbjct: 194 AWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRT 232

[Close]

BLAST of Spg013551 vs. TAIR 10
Match: AT3G03580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 8.9e-25
Identity = 62/188 (32.98%), Postives = 112/188 (59.57%), Query Frame = 0


Query: 68  LQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQLFRLIH-SKDGFIWNSIIQ 127
           L  L + H+L+I+ G  ++ FF+ KL+  Y+  R+PA S+ +FR +  +K+ ++WNSII+
Sbjct: 20  LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIR 79

Query: 128 SHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMMLNHDMNIYGLALKLGLFA 187
           +   NG + +A +FY ++R S   P+++T P V+  CA L        +Y   L +G F 
Sbjct: 80  AFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMG-FE 139

Query: 188 GNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVVGHVQNNESEKGLKCLYQM 247
            +  VG++LV MYS+ G    A  +FDE+ V+D+V+W +L+ G+  +   E+ L+  +++
Sbjct: 140 SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHEL 199

Query: 248 HRNGGTPN 255
             +   P+
Sbjct: 200 KNSWIVPD 206

[Close]

BLAST of Spg013551 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-24
Identity = 56/182 (30.77%), Postives = 95/182 (52.20%), Query Frame = 0


Query: 73  QFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQLFRLIHSKDGFIWNSIIQSHFSNG 132
           + H  +I  G  ++V+  + L+  YA   +   S ++F  ++ +DG  WNS++  +  NG
Sbjct: 263 EIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNG 322

Query: 133 DYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMMLNHDMNIYGLALKLGLFAGNSAVG 192
            Y +A   + QM  +   P       V+  CA L  L+    ++G  L+ G F  N  + 
Sbjct: 323 RYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR-GGFGSNIFIA 382

Query: 193 SSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVVGHVQNNESEKGLKCLYQMHRNGGT 252
           S+LV MYSKCG+ ++A  +FD + V D V+WTA+++GH  +    + +    +M R G  
Sbjct: 383 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 442

Query: 253 PN 255
           PN
Sbjct: 443 PN 443

[Close]

BLAST of Spg013551 vs. TAIR 10
Match: AT1G50270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 7.0e-22
Identity = 57/185 (30.81%), Postives = 99/185 (53.51%), Query Frame = 0


Query: 73  QFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQLFRLIHSKDGFIWNSIIQSHFSNG 132
           QFH+ I+  G  ++ F    L+S Y+S      + +LF     KD   W ++I     NG
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183

Query: 133 DYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMMLNHDMNIYGLALKLGLFAGNSAVG 192
              +A  ++++M+ +G   N+ TV  V+    ++  +    +++GL L+ G    +  +G
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243

Query: 193 SSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVVGHVQNNESEKGLKCLYQMHRNGGT 252
           SSLV MY KC   + A  +FDE+  ++VV WTAL+ G+VQ+   +KG+    +M ++   
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA 303

Query: 253 PNYRT 258
           PN +T
Sbjct: 304 PNEKT 308

[Close]

BLAST of Spg013551 vs. TAIR 10
Match: AT3G61170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-21
Identity = 54/175 (30.86%), Postives = 93/175 (53.14%), Query Frame = 0


Query: 59  FFLSRPNLALQSLLQFHSLIITTGNSNNVFFATKLMSFYASHRQPALSMQLFRLIHSKDG 118
           F LSR  + + S    H LI+ TG +        L+  YA       ++++F  +  KD 
Sbjct: 338 FALSRTEMKIAS--SAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDV 397

Query: 119 FIWNSIIQSHFSNGDYLQAFDFYLQMRASGSLPNQFTVPLVVSTCAELMMLNHDMNIYGL 178
             W +++  +  NG Y +A   +  MR  G  P++     V+S  AEL +L     ++G 
Sbjct: 398 ISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGN 457

Query: 179 ALKLGLFAGNSAVGSSLVYMYSKCGHPESASLLFDEITVKDVVAWTALVVGHVQN 234
            +K G F  + +V +SLV MY+KCG  E A+++F+ + ++D++ WT L+VG+ +N
Sbjct: 458 YIKSG-FPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKN 509

The following BLAST results are available for this feature:

BLAST of Spg013551 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154319.1	6.2e-97	85.24	pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 ...	[more]
XP_038901304.1	1.5e-95	81.82	pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Benincasa ...	[more]
XP_023513090.1	1.0e-94	81.34	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g39952, mito...	[more]
XP_022944467.1	1.0e-94	81.34	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g39952, mito...	[more]
XP_008459184.1	2.9e-94	80.86	PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial ...	[more]

BLAST of Spg013551 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E9N1	1.3e-49	47.95	Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidop...	[more]
Q9SS60	1.2e-23	32.98	Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX...	[more]
Q9LW63	4.7e-23	30.77	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]
Q9SX45	9.9e-21	30.81	Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX...	[more]
Q9FGL1	9.3e-19	29.89	Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis th...	[more]

BLAST of Spg013551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLQ3	3.0e-97	85.24	pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 ...	[more]
A0A6J1FVR1	4.8e-95	81.34	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g39952, mito...	[more]
A0A1S3C9K9	1.4e-94	80.86	pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X1 ...	[more]
A0A1S4E2D5	1.4e-94	80.86	pentatricopeptide repeat-containing protein At4g39952, mitochondrial isoform X2 ...	[more]
A0A6J1JGK6	1.2e-93	79.90	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g39952, mito...	[more]

BLAST of Spg013551 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39952.1	9.4e-51	47.95	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G03580.1	8.9e-25	32.98	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G23330.1	3.4e-24	30.77	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G50270.1	7.0e-22	30.81	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G61170.1	4.6e-21	30.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 60..177 e-value: 7.9E-12 score: 46.9 coord: 178..257 e-value: 1.2E-11 score: 46.3
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 120..148 e-value: 4.4E-4 score: 20.3 coord: 193..218 e-value: 0.15 score: 12.4 coord: 221..250 e-value: 0.005 score: 17.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 120..152 e-value: 5.6E-6 score: 24.2 coord: 221..254 e-value: 2.4E-4 score: 19.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 219..253 score: 9.065053
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 117..151 score: 9.930995
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 188..254 coord: 65..238
None	No IPR available	PANTHER	PTHR47929:SF1	SUBFAMILY NOT NAMED	coord: 188..254 coord: 65..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013551.1	Spg013551.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding