Spg013456 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg013456
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RanBP2-type domain-containing protein
Location	scaffold1: 5491902 .. 5494234 (-)
RNA-Seq Expression	Spg013456
Synteny	Spg013456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTATTTGGTGTGGATGGACTGCTTGGTGTGCGTATACCTGGCTTGCTTGTGGGTTGGGTTTGTCTGGCTCTGGTGCAATAGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAAAAGTGTGGACAACCAAAGGAGATAGCAGCAATGCCAGCAATTGCAATCCCTGGAGCTTCTTTTCCAACTTATTCACACTATTTTGCCAGGACCCAAGGAGGATTGGATACAAAGATGAATCTTGGATTAATAGGAAATGGCACTTCACAGCAACTGCATCCTCTGAGCTCCAATTGGTCCCTGGGAGGTGCTGATAAGTATGGAATTCATGCAGCTCCAACATTTCCTTTGGGTGGAAATAATTCTGCCATCTCGTATATGAGTTCTCCTAATCAGATCCTTTCAGTTCCGAAGGGTTGGCGGAGTGGTGACTGGATATGCAACTGTGGTTTCCATAATTACTCTTCACGTGCGCAGGTGGGATTTCCACCTTCTCATACTGAGTCGTTTTCTTTCTTTTCCTATGGGTGCTTTTAATTTCCCATTTTTGTTTACACCTGTTGTTTATATAACTAAACTTTGTCTTACTTGCAGTGCAAAAAATGCAATGCTTCACCACAAGGTACATGCACCTCTTTCTCTCTGGGTTTTAAATGGTCGCACTAGGACTATGATATAGCTATTTTATAGTTTCTGTATGTAATAACAAAGGAGTTATGGACCTATGGTGTCCTGCACACAAAAATCTTTCTATTGTTTCATTTATCCTATTTATCTTCTTTGTTGTTGGTTGAATGAATAGATTCATATTTTGGAATTTGGAGTAGTAATGTTTGATAGAAGGAAATTTTAGTAGAATGGAGAAACTTAGTTCCCTAGGGGTGGCTGTACTGGTATTTTTGAAGGTGAAAGGTATTTCAGCTGAGATAAAGAAGTCAATAGAGATAAGAGTTGATTAGAGTTATCAATTATATTTCTGTGTGAAGTTGAGCACCTCCTGGGGGATTCGACTCACCTTTCTCTCTCTCTCTCTCTCTCACGCTCTCTCTCTCTCTCTCTTTGGATTTTGCAGCACTTGGAATGAAACGCTTAGCATCCGAAGAACTTGTTCATCACTGGGATAACAAGAGATTAAATATTGGACAGGTATTCACCATGCACAGAAAAAAATGACGATAAAAATTTGATATTAAGGAAATATATGCTGTTAAAATTTGGTGAAACTAATAACTGGCTTGTTGTTCTTTTCTTGTCATTCAGACAAATGAGCAACAACAATCTTACCCAGGTTTTGAGCAGATGATAGGTTCCAGTAGTGACCCAAATGTGGGACTATATAATTCTTATACCCACGAAAGTTCTGGTGTAGCTCCAAATTTGGAAATGCAAATGCAGTTTCCCCAACAAGCAACTGCACCAACGCTCCTAGGGAAAGGGTATATGTAGTTGCATTAACTAGCTGTATTTCATTTTCTCTGACCCTTCTAATTAAACCCTTTTCTTCTTGGCCACACTGCTAATAAGGCTGTGATGTCATGAATCCTCATTTATAATGTTTGATTGATATCGCCCAAAATTTTAATAGCATGGAACAACTAGGATTTTAGTTAACTATGAACTCTTTACTGATTGAGATAAAACATCCTTACCTTATTGAATCTACAGAGCAAAGCAGTGGCGCAACGGAGATTGGATGTGCACAAATTGCAATAATCATAATTATGCATCTCGCTTACAATGTAACAGGTTATCATCTAAACTAGTTTTTTTCTTCACATTCATGTTGAATGCACATGTGTACGTGCCGTATGTACTATGCATTGATCTTTTGACCTTTGAATCTTATAATTCAATTACTCCACAAGTTCTTATTGATCCTGTCAGGAGAATGGTTGGATCCTATGTTCTTCTGGTTGTTAATTTAGTAGGTTTCTTCCATCTTAAATGGAATTTGGTAGCTCACATTGCATTGCACATCCAATATTTAAATGTTCTTTTGTAACAGGTGCAAGACTCAAAGAGATTCACTTTCTCTGCCACTCAGTGCCATCTGAGCAGATTTATACAGACTTCGGATGGCTGTTATTCTCTTGCCGCAATGTTCTTTCATAGAGGGAAAAAAAAAATTCATTTAGCGGCAATAATGCCTCAACTTTTTGGTTGTCTTAATCGACTCTCCTAGTCTCCAATATGTTGATTGATTATGAGTTTTTCATTACTTAGGAAAGCAAGTTTGGCTGTGAATGACATTACTGTTTTTGCTGAACAGTTGAGAATTTTAGTGTCGAATCATTATATAGATAAAGATATATATTTTCAGTTTTGCA

mRNA sequence

ATGTGTATTTGGTGTGGATGGACTGCTTGGTGTGCGTATACCTGGCTTGCTTGTGGGTTGGGTTTGTCTGGCTCTGGTGCAATAGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAAAAGTGTGGACAACCAAAGGAGATAGCAGCAATGCCAGCAATTGCAATCCCTGGAGCTTCTTTTCCAACTTATTCACACTATTTTGCCAGGACCCAAGGAGGATTGGATACAAAGATGAATCTTGGATTAATAGGAAATGGCACTTCACAGCAACTGCATCCTCTGAGCTCCAATTGGTCCCTGGGAGGTGCTGATAAGTATGGAATTCATGCAGCTCCAACATTTCCTTTGGGTGGAAATAATTCTGCCATCTCGTATATGAGTTCTCCTAATCAGATCCTTTCAGTTCCGAAGGGTTGGCGGAGTGGTGACTGGATATGCAACTGTGGTTTCCATAATTACTCTTCACGTGCGCAGGTGGGATTTCCACCTTCTCATACTGAGTCTGCAAAAAATGCAATGCTTCACCACAAGACAAATGAGCAACAACAATCTTACCCAGGTTTTGAGCAGATGATAGGTTCCAGTAGTGACCCAAATGTGGGACTATATAATTCTTATACCCACGAAAGTTCTGGTGTAGCTCCAAATTTGGAAATGCAAATGCAGTTTCCCCAACAAGCAACTGCACCAACGCTCCTAGGGAAAGGTGGCGCAACGGAGATTGGATGTGCACAAATTGCAATAATCATAATTATGCATCTCGCTTACAATGTAACAGGTGCAAGACTCAAAGAGATTCACTTTCTCTGCCACTCAGTGCCATCTGAGCAGATTTATACAGACTTCGGATGGCTGTTATTCTCTTGCCGCAATGTTCTTTCATAG

Coding sequence (CDS)

ATGTGTATTTGGTGTGGATGGACTGCTTGGTGTGCGTATACCTGGCTTGCTTGTGGGTTGGGTTTGTCTGGCTCTGGTGCAATAGGTTGCACTAACAACAATTATGCATCAAGAGAGAAGTGCAAAAAGTGTGGACAACCAAAGGAGATAGCAGCAATGCCAGCAATTGCAATCCCTGGAGCTTCTTTTCCAACTTATTCACACTATTTTGCCAGGACCCAAGGAGGATTGGATACAAAGATGAATCTTGGATTAATAGGAAATGGCACTTCACAGCAACTGCATCCTCTGAGCTCCAATTGGTCCCTGGGAGGTGCTGATAAGTATGGAATTCATGCAGCTCCAACATTTCCTTTGGGTGGAAATAATTCTGCCATCTCGTATATGAGTTCTCCTAATCAGATCCTTTCAGTTCCGAAGGGTTGGCGGAGTGGTGACTGGATATGCAACTGTGGTTTCCATAATTACTCTTCACGTGCGCAGGTGGGATTTCCACCTTCTCATACTGAGTCTGCAAAAAATGCAATGCTTCACCACAAGACAAATGAGCAACAACAATCTTACCCAGGTTTTGAGCAGATGATAGGTTCCAGTAGTGACCCAAATGTGGGACTATATAATTCTTATACCCACGAAAGTTCTGGTGTAGCTCCAAATTTGGAAATGCAAATGCAGTTTCCCCAACAAGCAACTGCACCAACGCTCCTAGGGAAAGGTGGCGCAACGGAGATTGGATGTGCACAAATTGCAATAATCATAATTATGCATCTCGCTTACAATGTAACAGGTGCAAGACTCAAAGAGATTCACTTTCTCTGCCACTCAGTGCCATCTGAGCAGATTTATACAGACTTCGGATGGCTGTTATTCTCTTGCCGCAATGTTCTTTCATAG

Protein sequence

MCIWCGWTAWCAYTWLACGLGLSGSGAIGCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTESAKNAMLHHKTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKGGATEIGCAQIAIIIIMHLAYNVTGARLKEIHFLCHSVPSEQIYTDFGWLLFSCRNVLS

Homology

[Close]

BLAST of Spg013456 vs. NCBI nr
Match: KAA0025683.1 (putative RNA-binding protein C17H9.04c [Cucumis melo var. makuwa] >TYK12558.1 putative RNA-binding protein C17H9.04c [Cucumis melo var. makuwa])

HSP 1 Score: 377.9 bits (969), Expect = 8.2e-101
Identity = 194/294 (65.99%), Postives = 216/294 (73.47%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGN
Sbjct: 73  GCTNNNYASREKCKKCGQPKEVAAMPALAIPGASFPTYSHYFARTQGGLDSKMNLGLIGN 132

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           GTSQ LHPLSSNWS+GGADKYGIHAAPTFPLGGNNSAISYMS  NQ+LSVPKGWR+GDW+
Sbjct: 133 GTSQHLHPLSSNWSMGGADKYGIHAAPTFPLGGNNSAISYMSLANQLLSVPKGWRNGDWL 192

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPG EQ
Sbjct: 193 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHQWDNKRLNIGQANEQQQSYPGLEQ 252

Query: 209 MIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKGG------------- 268
           M+G+SSDPNVGLYN Y HESS VAPNLEM +QFP QATAPTLLGKG              
Sbjct: 253 MMGTSSDPNVGLYNPYPHESSSVAPNLEMPIQFPPQATAPTLLGKGAKQWRNGDWMCTNC 312

Query: 269 -----ATEIGCAQIAII----------IIMHLAYNVTGARLKEIHFLCHSVPSE 280
                A+ + C   A            + + LA  + GARLKEIHFLC SVPS+
Sbjct: 313 NNHNYASRLHCNSCATSSYYLARKMADLYVLLAATLVGARLKEIHFLCPSVPSK 366

[Close]

BLAST of Spg013456 vs. NCBI nr
Match: XP_038883349.1 (uncharacterized RNA-binding protein C17H9.04c [Benincasa hispida])

HSP 1 Score: 368.6 bits (945), Expect = 5.0e-98
Identity = 180/226 (79.65%), Postives = 192/226 (84.96%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLD+K+NLGLIGN
Sbjct: 73  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDSKINLGLIGN 132

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           GTSQ LHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMS  NQ+LSVPKGWR+GDW+
Sbjct: 133 GTSQHLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSLANQLLSVPKGWRNGDWL 192

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++HH         + NEQQQSYPGFEQ
Sbjct: 193 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHHWDNKRLNIGQANEQQQSYPGFEQ 252

Query: 209 MIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKG 240
           M+GSSSDPNVGLYNSY HESS VAPNLEM MQFP QATAP LLGKG
Sbjct: 253 MMGSSSDPNVGLYNSYPHESSNVAPNLEMPMQFPPQATAPALLGKG 298

[Close]

BLAST of Spg013456 vs. NCBI nr
Match: XP_004134868.1 (uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >KGN48905.1 hypothetical protein Csa_003493 [Cucumis sativus])

HSP 1 Score: 362.8 bits (930), Expect = 2.7e-96
Identity = 176/226 (77.88%), Postives = 190/226 (84.07%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGN
Sbjct: 73  GCTNNNYASREKCKKCGQPKEVAAMPALAIPGASFPTYSHYFARTQGGLDSKMNLGLIGN 132

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           GTSQ LHPLSSNWSLGGADKYGIHAAPTFPL GNNSAISYMS  NQ+LSVPKGWR+GDW+
Sbjct: 133 GTSQHLHPLSSNWSLGGADKYGIHAAPTFPLSGNNSAISYMSLANQLLSVPKGWRNGDWL 192

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPGFEQ
Sbjct: 193 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHQWDNKRLNIGQANEQQQSYPGFEQ 252

Query: 209 MIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKG 240
           M+G+ SDPNVGLYNSY HESS VAPNLEM MQFP QATAPTLLGKG
Sbjct: 253 MMGAGSDPNVGLYNSYPHESSSVAPNLEMPMQFPPQATAPTLLGKG 298

[Close]

BLAST of Spg013456 vs. NCBI nr
Match: XP_008440810.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo])

HSP 1 Score: 360.1 bits (923), Expect = 1.8e-95
Identity = 174/226 (76.99%), Postives = 190/226 (84.07%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGN
Sbjct: 73  GCTNNNYASREKCKKCGQPKEVAAMPALAIPGASFPTYSHYFARTQGGLDSKMNLGLIGN 132

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           GTSQ LHPLSSNWS+GGADKYGIHAAPTFPLGGNNSAISYMS  NQ+LSVPKGWR+GDW+
Sbjct: 133 GTSQHLHPLSSNWSMGGADKYGIHAAPTFPLGGNNSAISYMSLANQLLSVPKGWRNGDWL 192

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPG EQ
Sbjct: 193 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHQWDNKRLNIGQANEQQQSYPGLEQ 252

Query: 209 MIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKG 240
           M+G+SSDPNVGLYN Y HESS VAPNLEM +QFP QATAPTLLGKG
Sbjct: 253 MMGTSSDPNVGLYNPYPHESSSVAPNLEMPIQFPPQATAPTLLGKG 298

[Close]

BLAST of Spg013456 vs. NCBI nr
Match: XP_022132998.1 (uncharacterized RNA-binding protein C17H9.04c [Momordica charantia])

HSP 1 Score: 358.6 bits (919), Expect = 5.2e-95
Identity = 177/226 (78.32%), Postives = 190/226 (84.07%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKE+AAMPAIAIPGASFPTYSHYFARTQGGL+TKMNLGLIGN
Sbjct: 73  GCTNNNYASREKCKKCGQPKEVAAMPAIAIPGASFPTYSHYFARTQGGLNTKMNLGLIGN 132

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           GTSQQ HPLSSNW LGG DKYGIHAA TFPLGGNNSAISYMSS NQIL VPKGWR+GDWI
Sbjct: 133 GTSQQPHPLSSNWPLGGVDKYGIHAAQTFPLGGNNSAISYMSSTNQILLVPKGWRNGDWI 192

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLH---------HKTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++H          +TNEQQQSYPGFEQ
Sbjct: 193 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHPWDSKRLNIGQTNEQQQSYPGFEQ 252

Query: 209 MIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKG 240
           ++ SSSD NVGLYNSY+HESSGVAPNLEM M FPQQ+TAPTLLGKG
Sbjct: 253 IVSSSSDLNVGLYNSYSHESSGVAPNLEMVMNFPQQSTAPTLLGKG 298

[Close]

BLAST of Spg013456 vs. ExPASy TrEMBL
Match: A0A5A7SLZ2 (Putative RNA-binding protein C17H9.04c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001400 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 4.0e-101
Identity = 194/294 (65.99%), Postives = 216/294 (73.47%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGN
Sbjct: 73  GCTNNNYASREKCKKCGQPKEVAAMPALAIPGASFPTYSHYFARTQGGLDSKMNLGLIGN 132

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           GTSQ LHPLSSNWS+GGADKYGIHAAPTFPLGGNNSAISYMS  NQ+LSVPKGWR+GDW+
Sbjct: 133 GTSQHLHPLSSNWSMGGADKYGIHAAPTFPLGGNNSAISYMSLANQLLSVPKGWRNGDWL 192

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPG EQ
Sbjct: 193 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHQWDNKRLNIGQANEQQQSYPGLEQ 252

Query: 209 MIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKGG------------- 268
           M+G+SSDPNVGLYN Y HESS VAPNLEM +QFP QATAPTLLGKG              
Sbjct: 253 MMGTSSDPNVGLYNPYPHESSSVAPNLEMPIQFPPQATAPTLLGKGAKQWRNGDWMCTNC 312

Query: 269 -----ATEIGCAQIAII----------IIMHLAYNVTGARLKEIHFLCHSVPSE 280
                A+ + C   A            + + LA  + GARLKEIHFLC SVPS+
Sbjct: 313 NNHNYASRLHCNSCATSSYYLARKMADLYVLLAATLVGARLKEIHFLCPSVPSK 366

[Close]

BLAST of Spg013456 vs. ExPASy TrEMBL
Match: A0A0A0KGM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505830 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.3e-96
Identity = 176/226 (77.88%), Postives = 190/226 (84.07%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGN
Sbjct: 73  GCTNNNYASREKCKKCGQPKEVAAMPALAIPGASFPTYSHYFARTQGGLDSKMNLGLIGN 132

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           GTSQ LHPLSSNWSLGGADKYGIHAAPTFPL GNNSAISYMS  NQ+LSVPKGWR+GDW+
Sbjct: 133 GTSQHLHPLSSNWSLGGADKYGIHAAPTFPLSGNNSAISYMSLANQLLSVPKGWRNGDWL 192

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPGFEQ
Sbjct: 193 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHQWDNKRLNIGQANEQQQSYPGFEQ 252

Query: 209 MIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKG 240
           M+G+ SDPNVGLYNSY HESS VAPNLEM MQFP QATAPTLLGKG
Sbjct: 253 MMGAGSDPNVGLYNSYPHESSSVAPNLEMPMQFPPQATAPTLLGKG 298

[Close]

BLAST of Spg013456 vs. ExPASy TrEMBL
Match: A0A1S3B1J3 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103485118 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 8.6e-96
Identity = 174/226 (76.99%), Postives = 190/226 (84.07%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGN
Sbjct: 73  GCTNNNYASREKCKKCGQPKEVAAMPALAIPGASFPTYSHYFARTQGGLDSKMNLGLIGN 132

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           GTSQ LHPLSSNWS+GGADKYGIHAAPTFPLGGNNSAISYMS  NQ+LSVPKGWR+GDW+
Sbjct: 133 GTSQHLHPLSSNWSMGGADKYGIHAAPTFPLGGNNSAISYMSLANQLLSVPKGWRNGDWL 192

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPG EQ
Sbjct: 193 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHQWDNKRLNIGQANEQQQSYPGLEQ 252

Query: 209 MIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKG 240
           M+G+SSDPNVGLYN Y HESS VAPNLEM +QFP QATAPTLLGKG
Sbjct: 253 MMGTSSDPNVGLYNPYPHESSSVAPNLEMPIQFPPQATAPTLLGKG 298

[Close]

BLAST of Spg013456 vs. ExPASy TrEMBL
Match: A0A6J1BXT0 (uncharacterized RNA-binding protein C17H9.04c OS=Momordica charantia OX=3673 GN=LOC111005702 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.5e-95
Identity = 177/226 (78.32%), Postives = 190/226 (84.07%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKE+AAMPAIAIPGASFPTYSHYFARTQGGL+TKMNLGLIGN
Sbjct: 73  GCTNNNYASREKCKKCGQPKEVAAMPAIAIPGASFPTYSHYFARTQGGLNTKMNLGLIGN 132

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           GTSQQ HPLSSNW LGG DKYGIHAA TFPLGGNNSAISYMSS NQIL VPKGWR+GDWI
Sbjct: 133 GTSQQPHPLSSNWPLGGVDKYGIHAAQTFPLGGNNSAISYMSSTNQILLVPKGWRNGDWI 192

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLH---------HKTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++H          +TNEQQQSYPGFEQ
Sbjct: 193 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHPWDSKRLNIGQTNEQQQSYPGFEQ 252

Query: 209 MIGSSSDPNVGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKG 240
           ++ SSSD NVGLYNSY+HESSGVAPNLEM M FPQQ+TAPTLLGKG
Sbjct: 253 IVSSSSDLNVGLYNSYSHESSGVAPNLEMVMNFPQQSTAPTLLGKG 298

[Close]

BLAST of Spg013456 vs. ExPASy TrEMBL
Match: A0A6J1EFP4 (uncharacterized RNA-binding protein C17H9.04c OS=Cucurbita moschata OX=3662 GN=LOC111433894 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 9.5e-95
Identity = 180/227 (79.30%), Postives = 191/227 (84.14%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQPKEIAAMPAIAI GASFPTYSHYFARTQGGLDTKMNLGL  N
Sbjct: 74  GCTNNNYASREKCKKCGQPKEIAAMPAIAIHGASFPTYSHYFARTQGGLDTKMNLGL-RN 133

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
           G  QQLHPLSSNWSLGGADKY IHA+P FPLGGNNSAISYMSSPNQILSVPKGWR+GDWI
Sbjct: 134 GPLQQLHPLSSNWSLGGADKYEIHASPAFPLGGNNSAISYMSSPNQILSVPKGWRNGDWI 193

Query: 149 CNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQ 208
           CNCGFHNYSSRAQ     +  ++      A   ++H          +TNEQQQS+PGFEQ
Sbjct: 194 CNCGFHNYSSRAQCKKCNASPQALGMKRLASEELVHQWDNKRLNIGQTNEQQQSFPGFEQ 253

Query: 209 MIGSSSDPNVG-LYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKG 240
           M+GSSSDPNVG LYNSY HESSG+APNLEM MQFPQQATAPTLLGKG
Sbjct: 254 MVGSSSDPNVGLLYNSYPHESSGIAPNLEMPMQFPQQATAPTLLGKG 299

[Close]

BLAST of Spg013456 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 119.0 bits (297), Expect = 6.4e-27
Identity = 79/217 (36.41%), Postives = 101/217 (46.54%), Query Frame = 0


Query: 29  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGN 88
           GCTNNNYASREKCKKCGQ KE+AA+ A+AIPGAS  T+ HYF R     D   +L    N
Sbjct: 56  GCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGSLLAFSN 115

Query: 89  GTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWI 148
            T+Q                                            SV K WRSGDWI
Sbjct: 116 ATNQ-------------------------------------------ASVHKEWRSGDWI 175

Query: 149 CNCGFHNYSSRAQ------VGFPPSHTESAKNAMLHHKTNEQQQSYPGFEQMIGSSSDPN 208
           C CGFHNYSSR Q      +      T+   +  L H+ + ++ +  G+  M   S+   
Sbjct: 176 CRCGFHNYSSRIQCKKCNEIAPLALGTKRLASEALAHEWDSKRLN-QGYTSMQTQSA--- 223

Query: 209 VGLYNSYTHESSGVAPNLEMQMQFPQQATAPTLLGKG 240
             +Y S+   S G   N ++ + F QQ + P LLG G
Sbjct: 236 --IYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMG 223

The following BLAST results are available for this feature:

BLAST of Spg013456 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025683.1	8.2e-101	65.99	putative RNA-binding protein C17H9.04c [Cucumis melo var. makuwa] >TYK12558.1 pu...	[more]
XP_038883349.1	5.0e-98	79.65	uncharacterized RNA-binding protein C17H9.04c [Benincasa hispida]	[more]
XP_004134868.1	2.7e-96	77.88	uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus] >KGN48905.1 hypo...	[more]
XP_008440810.1	1.8e-95	76.99	PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo]	[more]
XP_022132998.1	5.2e-95	78.32	uncharacterized RNA-binding protein C17H9.04c [Momordica charantia]	[more]

BLAST of Spg013456 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg013456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLZ2	4.0e-101	65.99	Putative RNA-binding protein C17H9.04c OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KGM9	1.3e-96	77.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505830 PE=4 SV=1	[more]
A0A1S3B1J3	8.6e-96	76.99	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1BXT0	2.5e-95	78.32	uncharacterized RNA-binding protein C17H9.04c OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1EFP4	9.5e-95	79.30	uncharacterized RNA-binding protein C17H9.04c OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Spg013456 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17975.1	6.4e-27	36.41	zinc finger (Ran-binding) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.1060.10		coord: 9..50 e-value: 2.3E-5 score: 25.5
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 140..161 coord: 29..110
None	No IPR available	PANTHER	PTHR23111:SF71	OS04G0110600 PROTEIN	coord: 140..161 coord: 29..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg013456.1	Spg013456.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding