Spg013169 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg013169
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Locationscaffold1: 21489932 .. 21494192 (+)
RNA-Seq ExpressionSpg013169
SyntenySpg013169
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTCTCGACCAAGAGGTCAGAGGTTCGAATCCCCCACCCCCTAATGTTGTTGTACTAAAAAAAAAGCTAATGGATAGTGGTCGGCGATGAAATAATCTTGAAAAGGCTATCAACAAAAATAAGTCAAGCATATGTACAATTTCAAGAACTAAACAAAAGTCATCATGAAGTTTCAACATGAAAATCTAATGAAGCTCTTGGGATGATGTGTTGAAAGACTTGAGATGATGTGTTGAAAGAGTCTATGAATACATGAAAAATAAGTAAAGTTTCTCATTGATTTTCATAGAGGAAGATTATGTAGAGGGAGGAAGGAAAAAAAAAAAAAAACAAACCCCATAGTTCGAGGGTACTTTTTATAATTTTCATTTTCTTTCTTTCTTTTTTTGAAAAAAAAATTCACTCCTTGGCTCAAGTTGGTCTCTTTTTAGTTATTTAAGGTCTCTATTTGGCTAAATACTAGTCCTTTAACACGTGCCGAGGATTAAAATGTGGATAATAAAATGCGATGGACATTTAAAATATTCCAAACCAACAATTTTAAAAATATATTTAAATTAATAAATAAATATTTTACATTTCAAAAATATTTTTAAATACTCATTATTAATATAATTTCCATATTAGTTGCATTTCATTACTTTTTTGTTTACTAGTACAAAAAAACGTGCATCGCACGTGAAATTTTAATAGTTTATTTTAAAGTATAAAATAAAGTACAATGAATTTTTATATTAATGAATAAAAGACAAATTGATTTTATGAAAATAACTATATTGGTACTAAATAAATATTATTTAATAAAGTACAATCCATCCGTTGTTTTAATCTTGCTCTTCTGGCGAAACAAGGGTGGAGGATTCTCAAATGCCCAGATAGCTTATTATCAAGGATATATAAGGATCGTTATTTCAAGCACACTGATTTTTTAGGGGCGACGGCTAAGGGGCGAGTTTCATGGGGTTGGCGAAGTATCATAGATGGGAGAGATGTTCTTCGACAAGGGTTTTGTTGGCGGGTAGGCATGGAGACGAAATTAAAGATCTGGGAAGATCCTTGGGTACCAAGGCCCTCAACGTTTAAACCACTGCGATGTTTGAATAATGAGTGGAGCTTGGTTAAAGATTTGTTGGAAGAGAATGGGTCAAAATGGAGGGGAGATCGTTTGAGAAGTTCATTATCGCCTGAGGATGTGGAGTTGGTTATGGCTATTCCGATCAGCAGAAGAGAGGCTACCGATCGAGCAGTATGGCACTTTACAAACTCCGGGGAGTATACTGTTAAATCGGGCTATCGCACGGCAAAGAATCTGCTGTCCAATGCGGAATCAAGCGCTAATGGGGGTAGACGCCTCCTATGGAAGAAGATATGGAATTTGCCTTGTATTCCAAAGATAAGAAACTTTATTTGGAGGGCCTCTAAAAATTTTCTTGCAGTAGGTGGGAACCTGGTCCGAAGGGGTATGCAGACGGATGGATTTTGCCAAATTTGTGGGGGAGAATTAGAGACAGTAAACCATGCCCTTCTGGAGTGTGAGCCGGCCAGGGCCTTTTGGTTTGGTTCACCACTACAGTTGGACACAAGGGGATATAAGGGGTTGAGTTTTGCTGTGAGTTGGGAGAAAATATATCTAAGAATGGAAGGGAAGGATAATTCGGATGAGGCCCTCTGTTACCTAGGACATGGGTTGTGGAGGGTTTGGAAGGAAAGGAATGCGGTGATTTTCAAAAACAAGGCTCCGGAAATTGAGAATAACATTGTATTCACCATCAGAGATGTTAGTGAATACAGAAAAGCTGTGGGAGAGGCAGCAATTGGTAGGCGAGAAGAGCCGGGTAGTGAGGATCAGCAGGTGGGTCGAAATCCAGATCGGCCGACTTTGTGGATAGATGCTGCATGGATAAAGGAGACTTTATCGTCTGGACTGGGCTGGTCATTGCGAGGCCCTGATGGAAGCATTTGGCTAGAACAAGCAGAAAATGGTGGGAACAGTTTGAACAGCATGCATGCAGAGGGAAAAGCATTAGTCCGTGGCTTGGAATGCGCGAAGACGATGGGCATTCAAGAGCTGCTTGTTAAGTCTGATGCTTTACGAGTGGTGAACATCATGAATGGGAAGGAAAAATGCCCAGTGGACTTTGAACCAATACATGACTGCTTTTGTCATCTACTTGAGGATTTTAATTCTTGCGAATTGTTATTTGTCAAGAGGGAGCTCAATGAGAGAACTCATATGTTAGCCAAGAATGGCCTTTGTAACTAGTTATTTCTTCGAATAAAGCTTTCGTTTGGAACAAAAAAAAATAACTTGGTAATAAAAAAAAAAAAAAAAGCAATTATACACATAACTAACGTAACAGTATAACTATTATTGTTATAAACTAACACAAGCATAGATCAATGATAATTGACATCTACTCATTCCCTCAAAATTAGAGTTTCAGAACTTCATACCTGCACATTTGTAATGTTAAAAAAACCTATATAATTAAATTGTAGTGTATTTATTAAAAAACTGATGTTTAATATAAGAAACATAGTATGCATTTAAAATTAAATCTAAAAGATGTAAAATGTATATTTATATATGAAATGGAAGTTAAGACAACACATTTAATTTAATTTAATTTTTGAAAATTAAATTGCAACATCGACCCATAAATATAACTTTATACAAATGTTTACCTTATATTTTTATTACTAAACCATATTATTTTTAGTAATAATTATTCTACATTTCAACTCATTAAAAATAAAAAGTGAATTAATATGACATATTATCAGTCCAATTTGTATGATTCAAAATAAAAATAGAAAGTGAATTAATAAGAAGTATTGTCACTCCAATTTGTATGATTCAAAATAGCTATCTTTTTTTGGAATTACACCAACATTTTATAAGAATGCATGAAAGTAAAATTTAGCCCAATATGTTTTATTCAATTGAATTTATAAAATAAAATGAAAAAAAAAATCACTTGAACTTGAACCAAATATTGTTCTAAGAATATGTGAAATTCAATCTTTCTAACTCATATATAATCGAATATTTAAAATGAAAGGGCAAAAATGTCACACACTTGACTCTCTATTGCCTTTTATGGATACACAATACTTGTTTAAAAATCAATTCATTGGATTTGATGTTTATATCAACTAATGATCACCACAATTGTCTTCCATTGTTTTATTTTCTTTTGGAATTTAAATCAATATAGTATATTTTATTTCCTTTTTAAAATTGAATCAATGAAGAAAATTTTATTTATCACCTTTCGAAAATACTAAAAATATATTAGAAATTTGGAGAGTCAGAGAAGATATAACAATAAAGAGAGATTACTTTAACAAAAATATAGTTTGTCATACTAAAAAAAAATAATAATAATATAATGTAGAAATTTGCAACCTCTTCCAATTCCCTAAAATCGAGCTAGCAATAGCATTTTCGAATATAGATATACTATGGCTTATTGTTGAGAGCAAGAAGGAGAGAAGCAATATTTATGTATAGAGGGGAAAAACAAGAAAAGAAAAGATGAAAGAGCGAGAGAGGGAAGAGTGTGAATAGATGTTGGGGAAGCCAATGGTCCAAAAAAACTCGAAGGTTTTCTTAATTTACTTCTTCTCCAACCGAAAAACTTCTCCACGTCATAAATGATAAAACCTATTTATTTGAAATTGATGAGTTGTTGATTTATACTATAAAATTTTCCCTAATGTTTTGATTAATTTTTCAATTACATCCGAACTTTTTGTTATATTATCAATTATCAATTTTATCTAAACAATGTGTTAAAAATTTTCAATGAACTCATTTTGTAAAAAAAAAAAATGATATTATATATGTTGATGGTCAAATTTGGACTGGAAGAACTCACCTGACCTTCACGGAATTTGTATGATAGGGGGGAAGACGTGGCCTGCAAGACAGAAAAACATGCACACCAGTGTGGTGCTTGCCAAATCGCCTCCGATGCTTAAGTCAGCAAGCAGAACGATGGGAAGCAAGAGCAAGAGTAAGAGGAGAGTCATAGAATATAGTTTGGGATTCGGGTTTAAATACATTTTCCTGCCTTAGGCTTTCTAGGCATTCGGAGAGGATTTAGGCTGAACCAGGTGGAACCGGGACATCTAGGGGCACTAGGGATCGAGCGGAGGGGAGGAGACTCGACCCACACAAGTGGGTCGAGCATGGGATTGGGCCGGGATGACCCAATCCCTTCAGCTCACCTTCCTTCGGGGTCCGCTTCCTAG

mRNA sequence

ATGTACTCTCGACCAAGAGTACAATCCATCCGTTGTTTTAATCTTGCTCTTCTGGCGAAACAAGGGTGGAGGATTCTCAAATGCCCAGATAGCTTATTATCAAGGATATATAAGGATCGTTATTTCAAGCACACTGATTTTTTAGGGGCGACGGCTAAGGGGCGAGTTTCATGGGGTTGGCGAAGTATCATAGATGGGAGAGATGTTCTTCGACAAGGGTTTTGTTGGCGGGTAGGCATGGAGACGAAATTAAAGATCTGGGAAGATCCTTGGGTACCAAGGCCCTCAACGTTTAAACCACTGCGATGTTTGAATAATGAGTGGAGCTTGGTTAAAGATTTGTTGGAAGAGAATGGGTCAAAATGGAGGGGAGATCGTTTGAGAAGTTCATTATCGCCTGAGGATGTGGAGTTGGTTATGGCTATTCCGATCAGCAGAAGAGAGGCTACCGATCGAGCAGTATGGCACTTTACAAACTCCGGGGATTTTGCTGTGAGTTGGGAGAAAATATATCTAAGAATGGAAGGGAAGGATAATTCGGATGAGGCCCTCTGTTACCTAGGACATGGGTTGTGGAGGGTTTGGAAGGAAAGGAATGCGGTGATTTTCAAAAACAAGGCTCCGGAAATTGAGAATAACATTGTATTCACCATCAGAGATGTTAGTGAATACAGAAAAGCTGTGGGAGAGGCAGCAATTGGGGGGAAGACGTGGCCTGCAAGACAGAAAAACATGCACACCAGTGTGGTGCTTGCCAAATCGCCTCCGATGCTTAAGTCAGCAAGCAGAACGATGGGAAGCAAGAGCAAGAGCTTTCTAGGCATTCGGAGAGGATTTAGGCTGAACCAGGTGGAACCGGGACATCTAGGGGCACTAGGGATCGAGCGGAGGGGAGGAGACTCGACCCACACAAGTGGGTCGAGCATGGGATTGGGCCGGGATGACCCAATCCCTTCAGCTCACCTTCCTTCGGGGTCCGCTTCCTAG

Coding sequence (CDS)

ATGTACTCTCGACCAAGAGTACAATCCATCCGTTGTTTTAATCTTGCTCTTCTGGCGAAACAAGGGTGGAGGATTCTCAAATGCCCAGATAGCTTATTATCAAGGATATATAAGGATCGTTATTTCAAGCACACTGATTTTTTAGGGGCGACGGCTAAGGGGCGAGTTTCATGGGGTTGGCGAAGTATCATAGATGGGAGAGATGTTCTTCGACAAGGGTTTTGTTGGCGGGTAGGCATGGAGACGAAATTAAAGATCTGGGAAGATCCTTGGGTACCAAGGCCCTCAACGTTTAAACCACTGCGATGTTTGAATAATGAGTGGAGCTTGGTTAAAGATTTGTTGGAAGAGAATGGGTCAAAATGGAGGGGAGATCGTTTGAGAAGTTCATTATCGCCTGAGGATGTGGAGTTGGTTATGGCTATTCCGATCAGCAGAAGAGAGGCTACCGATCGAGCAGTATGGCACTTTACAAACTCCGGGGATTTTGCTGTGAGTTGGGAGAAAATATATCTAAGAATGGAAGGGAAGGATAATTCGGATGAGGCCCTCTGTTACCTAGGACATGGGTTGTGGAGGGTTTGGAAGGAAAGGAATGCGGTGATTTTCAAAAACAAGGCTCCGGAAATTGAGAATAACATTGTATTCACCATCAGAGATGTTAGTGAATACAGAAAAGCTGTGGGAGAGGCAGCAATTGGGGGGAAGACGTGGCCTGCAAGACAGAAAAACATGCACACCAGTGTGGTGCTTGCCAAATCGCCTCCGATGCTTAAGTCAGCAAGCAGAACGATGGGAAGCAAGAGCAAGAGCTTTCTAGGCATTCGGAGAGGATTTAGGCTGAACCAGGTGGAACCGGGACATCTAGGGGCACTAGGGATCGAGCGGAGGGGAGGAGACTCGACCCACACAAGTGGGTCGAGCATGGGATTGGGCCGGGATGACCCAATCCCTTCAGCTCACCTTCCTTCGGGGTCCGCTTCCTAG

Protein sequence

MYSRPRVQSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGRDVLRQGFCWRVGMETKLKIWEDPWVPRPSTFKPLRCLNNEWSLVKDLLEENGSKWRGDRLRSSLSPEDVELVMAIPISRREATDRAVWHFTNSGDFAVSWEKIYLRMEGKDNSDEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVFTIRDVSEYRKAVGEAAIGGKTWPARQKNMHTSVVLAKSPPMLKSASRTMGSKSKSFLGIRRGFRLNQVEPGHLGALGIERRGGDSTHTSGSSMGLGRDDPIPSAHLPSGSAS
Homology
BLAST of Spg013169 vs. NCBI nr
Match: XP_021818901.1 (uncharacterized protein LOC110760860 [Prunus avium])

HSP 1 Score: 176.8 bits (447), Expect = 3.1e-40
Identity = 86/236 (36.44%), Postives = 128/236 (54.24%), Query Frame = 0

Query: 8   QSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGR 67
           + +RCFNLA+LAK GWRI+K PDSLL+  ++D+YF+ +DF+ A      SWGW+ I+ GR
Sbjct: 122 RDLRCFNLAMLAKIGWRIIKHPDSLLATTFRDKYFRSSDFMRAVVGCGSSWGWKGIVQGR 181

Query: 68  DVLRQGFCWRVGMETKLKIWEDPWVPRPSTFKPLRCLNNEWSLVKDLLEENGSKWRGDRL 127
            +L  G  WR+G   ++ I  D WVP+PSTFK      +   LV+ L++     W  D +
Sbjct: 182 KILEAGMRWRLGNGHQVHICLDNWVPKPSTFKIYSRHPDMPILVQGLIDNQMKMWNQDLI 241

Query: 128 RSSLSPEDVELVMAIPISRREATDRAVWHFTNSG------------DFAVSWEKIYLRME 187
               S  + + ++++P+SR    D+ VWHFT  G            +F+  WE I  + E
Sbjct: 242 LRCFSCVEAQTILSLPLSRWGCDDKLVWHFTAHGGYTLDVLQLVGEEFSECWESILKKYE 301

Query: 188 GKDNSDEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVFTIRDVSEYRKAVGEA 232
              N  E L  +  GLWR+WK RN+ +F+    +    +      V EYR A+  A
Sbjct: 302 KNVNFQEILQVVVFGLWRLWKTRNSAVFEGTVTDPTTMVRSLQAQVQEYRAALMSA 357

BLAST of Spg013169 vs. NCBI nr
Match: XP_009757415.1 (PREDICTED: uncharacterized protein LOC104210254 [Nicotiana sylvestris])

HSP 1 Score: 159.1 bits (401), Expect = 6.6e-35
Identity = 78/213 (36.62%), Postives = 119/213 (55.87%), Query Frame = 0

Query: 15  LALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGRDVLRQGF 74
           +ALLAKQ WRIL  PDSLL+R++K +YF H+ FL A      SW WRSI+ GRD+L  G 
Sbjct: 1   MALLAKQAWRILSYPDSLLARVFKRKYFPHSTFLDAFTPSTGSWSWRSILWGRDLLVTGL 60

Query: 75  CWRVGMETKLKIWEDPWVPRPSTFKP--LRCLNNEWSLVKDLLEENGSKWRGDRLRSSLS 134
            WR+     + +W DPW+PR + F P  ++  NN    V DL++E+   W+  ++ ++  
Sbjct: 61  RWRISDGKNINVWIDPWIPRNNGFTPKSIQMQNNLDFKVADLIDEDTHTWKLHKISTTFE 120

Query: 135 PEDVELVMAIPISRREATDRAVWHFTNSGDFAVSWEKIYLRMEGKDNSDEALCYLGHGLW 194
           PEDV+ ++ IPIS     DR +WH + SG++ V       +        E L    + +W
Sbjct: 121 PEDVDAILFIPISIIGLNDRLLWHHSKSGNYEVKSGNYLAK-----GLTELLYLSVNIMW 180

Query: 195 RVWKERNAVIFKNKAPEIENNIVFTIRDVSEYR 226
           ++WK RN+  F  +  E  + +  T  +  EY+
Sbjct: 181 QIWKGRNSWCFNQEMLEPTDIVSKTPFEYEEYK 208

BLAST of Spg013169 vs. NCBI nr
Match: XP_016458490.1 (PREDICTED: uncharacterized protein LOC107782157 [Nicotiana tabacum])

HSP 1 Score: 156.0 bits (393), Expect = 5.6e-34
Identity = 67/160 (41.88%), Postives = 102/160 (63.75%), Query Frame = 0

Query: 8   QSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGR 67
           + ++ FN+ALLAKQ WRIL  PDSLL+R+ K +YF H+ FL A+     SW WRSI+ GR
Sbjct: 21  RDLKAFNMALLAKQAWRILSYPDSLLTRVLKSKYFSHSTFLDASTSSTGSWIWRSILWGR 80

Query: 68  DVLRQGFCWRVGMETKLKIWEDPWVPRPSTFKP--LRCLNNEWSLVKDLLEENGSKWRGD 127
           D+L  G  WR+     + +W DPW+PR + F P  ++  NN    V DL++E+   W+  
Sbjct: 81  DLLVTGLRWRISNGKNINVWTDPWIPRKNGFTPKSIQMQNNLDLKVADLIDEDTHTWKLH 140

Query: 128 RLRSSLSPEDVELVMAIPISRREATDRAVWHFTNSGDFAV 166
           ++ ++  PED++ +++IPIS     DR +WH + SG++ V
Sbjct: 141 KISTTFEPEDIDAILSIPISIIGLNDRLLWHHSKSGNYEV 180

BLAST of Spg013169 vs. NCBI nr
Match: XP_016455260.1 (PREDICTED: uncharacterized protein LOC107779354 [Nicotiana tabacum])

HSP 1 Score: 155.6 bits (392), Expect = 7.3e-34
Identity = 76/213 (35.68%), Postives = 117/213 (54.93%), Query Frame = 0

Query: 15  LALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGRDVLRQGF 74
           +ALLAKQ WR+L  PDSLL+R+ K +YF H+ FL        SW WRSI+ GRD+L  G 
Sbjct: 1   MALLAKQAWRVLSYPDSLLARVLKRKYFPHSTFLDVFTPSTGSWSWRSILWGRDLLVTGL 60

Query: 75  CWRVGMETKLKIWEDPWVPRPSTFKP--LRCLNNEWSLVKDLLEENGSKWRGDRLRSSLS 134
            WR+     + +W DPW+PR + F P  ++  NN    V DL++E+   W+  ++ ++  
Sbjct: 61  RWRISDGKNINVWIDPWIPRNNGFTPKSIQMQNNLDFKVADLIDEDTHTWKLHKISTTFE 120

Query: 135 PEDVELVMAIPISRREATDRAVWHFTNSGDFAVSWEKIYLRMEGKDNSDEALCYLGHGLW 194
           PEDV+ ++ IPIS     DR +WH + SG++ V       +        E L    + +W
Sbjct: 121 PEDVDAILFIPISIIGLNDRLLWHHSKSGNYEVKSGNYLAK-----GLTELLYLSVNIMW 180

Query: 195 RVWKERNAVIFKNKAPEIENNIVFTIRDVSEYR 226
           ++WK RN+  F  +  E  + +  T  +  EY+
Sbjct: 181 QIWKGRNSWCFNQEMLEPTDIVSKTPFEYEEYK 208

BLAST of Spg013169 vs. NCBI nr
Match: XP_008359713.2 (uncharacterized protein LOC103423419 [Malus domestica])

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-33
Identity = 82/242 (33.88%), Postives = 118/242 (48.76%), Query Frame = 0

Query: 8   QSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGR-VSWGWRSIIDG 67
           + I+C NLALLAK GWRI + P SLL+ +  D+YF    F G   KG+  SWGW+ + + 
Sbjct: 286 KDIQCVNLALLAKIGWRITQNPLSLLASVLSDKYFPGKSF-GEALKGKNTSWGWKGLFEA 345

Query: 68  RDVLRQGFCWRVGMETKLKIWEDPWVPRPSTFKPLRCLNNEWSLVKDLLEENGSKWRGDR 127
           R VL+ G  WRVG    + I +DPW+P+PST+K +     E ++V DL++   + WR D 
Sbjct: 346 RKVLKLGLRWRVGNGKSINIRKDPWLPKPSTYKVIPKPILEGTMVCDLIDPVTNSWRTDL 405

Query: 128 LRSSLSPEDVELVMAIPISRREATDRAVWHFTNS-------------------------- 187
           +      EDV  +++IP+S     DR VWH+T +                          
Sbjct: 406 IELGFQREDVLPILSIPLSHAGIDDRLVWHYTTNEIFSVKTGFQIRSNASFGNAATMLWR 465

Query: 188 ------------------GDFAVSWEKIYLRMEGKDNSDEALCYLGHGLWRVWKERNAVI 205
                              DF  SW     +++  +N+D+       GLWR+WK RN VI
Sbjct: 466 HVFWFCSPLHLNSHALEGSDFLESWSNFCAQVKDMNNADDIRQEFSFGLWRLWKNRNDVI 525

BLAST of Spg013169 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-14
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 13  FNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGRDVLRQ 72
           FN ALLAKQ +RI+  P +LLSR+ + RYF H+  +  +   R S+ WRSII GR++L +
Sbjct: 65  FNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSR 124

Query: 73  GFCWRVGMETKLKIWEDPWVPRPSTFKPL 102
           G    +G     K+W D W+   +   PL
Sbjct: 125 GLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Spg013169 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-09
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 0

Query: 7   VQSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYF--KHTDFLGATAKGRVSWGWRSII 66
           V++ +  N AL++K GWR+L+  +SL + + + +Y   +  D      KG  S  WRSI 
Sbjct: 103 VRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIA 162

Query: 67  DG-RDVLRQGFCWRVGMETKLKIWEDPWVPRPSTFKPLRCLNN-------EWSLVKDLLE 126
            G RDV+  G  W  G   +++ W D WV    + KPL  L+N       +  + KDL  
Sbjct: 163 IGLRDVVSHGVGWIPGDGQQIRFWTDRWV----SGKPLLELDNGERPTDCDTVVAKDLWI 222

Query: 127 ENGSKWRGDRLRS-SLSPEDVELVMAIPISRREATDRAVWHFTNSGDFAV 166
             G  W   ++   + +   +EL   +      A DR  W F+  G F+V
Sbjct: 223 P-GRGWDFAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSV 267

BLAST of Spg013169 vs. ExPASy TrEMBL
Match: A0A6P5SYW2 (uncharacterized protein LOC110760860 OS=Prunus avium OX=42229 GN=LOC110760860 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-40
Identity = 86/236 (36.44%), Postives = 128/236 (54.24%), Query Frame = 0

Query: 8   QSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGR 67
           + +RCFNLA+LAK GWRI+K PDSLL+  ++D+YF+ +DF+ A      SWGW+ I+ GR
Sbjct: 122 RDLRCFNLAMLAKIGWRIIKHPDSLLATTFRDKYFRSSDFMRAVVGCGSSWGWKGIVQGR 181

Query: 68  DVLRQGFCWRVGMETKLKIWEDPWVPRPSTFKPLRCLNNEWSLVKDLLEENGSKWRGDRL 127
            +L  G  WR+G   ++ I  D WVP+PSTFK      +   LV+ L++     W  D +
Sbjct: 182 KILEAGMRWRLGNGHQVHICLDNWVPKPSTFKIYSRHPDMPILVQGLIDNQMKMWNQDLI 241

Query: 128 RSSLSPEDVELVMAIPISRREATDRAVWHFTNSG------------DFAVSWEKIYLRME 187
               S  + + ++++P+SR    D+ VWHFT  G            +F+  WE I  + E
Sbjct: 242 LRCFSCVEAQTILSLPLSRWGCDDKLVWHFTAHGGYTLDVLQLVGEEFSECWESILKKYE 301

Query: 188 GKDNSDEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVFTIRDVSEYRKAVGEA 232
              N  E L  +  GLWR+WK RN+ +F+    +    +      V EYR A+  A
Sbjct: 302 KNVNFQEILQVVVFGLWRLWKTRNSAVFEGTVTDPTTMVRSLQAQVQEYRAALMSA 357

BLAST of Spg013169 vs. ExPASy TrEMBL
Match: A0A2N9H9S6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36216 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-35
Identity = 78/176 (44.32%), Postives = 105/176 (59.66%), Query Frame = 0

Query: 8   QSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGR 67
           + ++ FN ALLA+QGWR+L+ P SL+ RI K +YF HT FL A   G  S+ WRSI + R
Sbjct: 796 RDLQLFNRALLARQGWRLLQQPHSLIFRILKAKYFPHTSFLEAQVTGNASYIWRSICEAR 855

Query: 68  DVLRQGFCWRVGMETKLKIWEDPWVPRPSTFK---PLRCLNNEWSLVKDLLEENGSKWRG 127
            VLR G  WRVG    +KIW+D W+P PSTF+   PL   N+E   V  L+ EN  +W  
Sbjct: 856 HVLRDGLRWRVGNGVNIKIWKDAWLPSPSTFRVISPLSIPNSE-DTVDSLIVENDMRWDE 915

Query: 128 DRLRSSLSPEDVELVMAIPISRREATDRAVWHFTNSGDFAVSWEKIYLRMEGKDNS 181
           D+L     P DVE++  IP+S R   D+ +W  T SG+F V      L  + +D+S
Sbjct: 916 DKLEQMFIPRDVEIIKQIPLSLRRPRDKLIWTGTKSGNFTVRSAYNLLLHQSRDDS 970

BLAST of Spg013169 vs. ExPASy TrEMBL
Match: A0A1U7V6R2 (uncharacterized protein LOC104210254 OS=Nicotiana sylvestris OX=4096 GN=LOC104210254 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-35
Identity = 78/213 (36.62%), Postives = 119/213 (55.87%), Query Frame = 0

Query: 15  LALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGRDVLRQGF 74
           +ALLAKQ WRIL  PDSLL+R++K +YF H+ FL A      SW WRSI+ GRD+L  G 
Sbjct: 1   MALLAKQAWRILSYPDSLLARVFKRKYFPHSTFLDAFTPSTGSWSWRSILWGRDLLVTGL 60

Query: 75  CWRVGMETKLKIWEDPWVPRPSTFKP--LRCLNNEWSLVKDLLEENGSKWRGDRLRSSLS 134
            WR+     + +W DPW+PR + F P  ++  NN    V DL++E+   W+  ++ ++  
Sbjct: 61  RWRISDGKNINVWIDPWIPRNNGFTPKSIQMQNNLDFKVADLIDEDTHTWKLHKISTTFE 120

Query: 135 PEDVELVMAIPISRREATDRAVWHFTNSGDFAVSWEKIYLRMEGKDNSDEALCYLGHGLW 194
           PEDV+ ++ IPIS     DR +WH + SG++ V       +        E L    + +W
Sbjct: 121 PEDVDAILFIPISIIGLNDRLLWHHSKSGNYEVKSGNYLAK-----GLTELLYLSVNIMW 180

Query: 195 RVWKERNAVIFKNKAPEIENNIVFTIRDVSEYR 226
           ++WK RN+  F  +  E  + +  T  +  EY+
Sbjct: 181 QIWKGRNSWCFNQEMLEPTDIVSKTPFEYEEYK 208

BLAST of Spg013169 vs. ExPASy TrEMBL
Match: A0A2N9GW67 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31640 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.2e-35
Identity = 81/193 (41.97%), Postives = 113/193 (58.55%), Query Frame = 0

Query: 8    QSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGR 67
            + ++ FN ALLA+QGWR+++ P SL+ R  K +YF HT FL A   G VS+ WRSI + R
Sbjct: 1243 RDLQLFNKALLARQGWRLMQHPQSLIFRFLKSKYFPHTTFLEAQLSGNVSYVWRSICEAR 1302

Query: 68   DVLRQGFCWRVGMETKLKIWEDPWVPRPSTFK---PLRCLNNEWSLVKDLLEENGSKWRG 127
             VLR G  WRVG  T +KIW+D W+P P++FK   P    ++E S V  L++ N  +W  
Sbjct: 1303 QVLRDGLRWRVGNGTDIKIWKDAWLPTPTSFKVISPAHVSHSEAS-VDWLIDGNVMQWNL 1362

Query: 128  DRLRSSLSPEDVELVMAIPISRREATDRAVWHFTNSGDFAV-SWEKIYLRMEGKDNSDEA 187
            D+LR  L P DVE++  IP+S R   D+ +W  T SG+F V S  K+ L      +   +
Sbjct: 1363 DKLRQFLLPRDVEIIKQIPLSLRRPRDKLIWTGTKSGNFTVKSAYKLLLNQTNVASGSSS 1422

Query: 188  LCYLGHGLW-RVW 196
                   LW R+W
Sbjct: 1423 NGMGAASLWTRIW 1434

BLAST of Spg013169 vs. ExPASy TrEMBL
Match: A0A2N9IMU5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54064 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-34
Identity = 73/160 (45.62%), Postives = 100/160 (62.50%), Query Frame = 0

Query: 8    QSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGR 67
            + +  FN ALLA+QGWR+L  P SL+ RI K +YF HT FL A   G VS+ WRSI + R
Sbjct: 1215 RDLHLFNKALLARQGWRLLHHPQSLVCRILKAKYFPHTSFLEAQLSGNVSYIWRSICEAR 1274

Query: 68   DVLRQGFCWRVGMETKLKIWEDPWVPRPSTFKPLRCLN--NEWSLVKDLLEENGSKWRGD 127
             VLR G  WRVG  + +KIW+D W+P PSTF+ +  +N  N  + V  L++ N   W  D
Sbjct: 1275 QVLRDGLRWRVGNGSNIKIWKDAWLPSPSTFRLISPINDSNSEATVDSLIDGNSMCWVVD 1334

Query: 128  RLRSSLSPEDVELVMAIPISRREATDRAVWHFTNSGDFAV 166
            +L     P DVE++  IP+S R+  D+ +W  T SG+F+V
Sbjct: 1335 KLEQMFLPRDVEIIKQIPLSLRKPRDKLIWTGTKSGNFSV 1374

BLAST of Spg013169 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 8.1e-23
Identity = 56/167 (33.53%), Postives = 88/167 (52.69%), Query Frame = 0

Query: 8   QSIRCFNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGR 67
           + I  FNLALL KQ WR+L  P+SL+++++K RYF  +D L A    R S+ W+SI   +
Sbjct: 59  KDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQ 118

Query: 68  DVLRQGFCWRVGMETKLKIWEDPWV---PRPSTFKPLRCLNNEWS------LVKDLLEEN 127
           ++LRQG    VG    + IW   W+   P  +  +  R    E++       V DL++E+
Sbjct: 119 EILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDES 178

Query: 128 GSKWRGDRLRSSLSPEDVELVMAIPISRREATDRAVWHFTNSGDFAV 166
           G +WR D +       + +L+  +    R   D   W +T+SGD+ V
Sbjct: 179 GREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTV 225

BLAST of Spg013169 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-15
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 13  FNLALLAKQGWRILKCPDSLLSRIYKDRYFKHTDFLGATAKGRVSWGWRSIIDGRDVLRQ 72
           FN ALLAKQ +RI+  P +LLSR+ + RYF H+  +  +   R S+ WRSII GR++L +
Sbjct: 65  FNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSR 124

Query: 73  GFCWRVGMETKLKIWEDPWVPRPSTFKPL 102
           G    +G     K+W D W+   +   PL
Sbjct: 125 GLLRTIGDGIHTKVWLDRWIMDETPLPPL 153

BLAST of Spg013169 vs. TAIR 10
Match: AT2G22440.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1); Has 208 Blast hits to 191 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-11
Identity = 38/180 (21.11%), Postives = 80/180 (44.44%), Query Frame = 0

Query: 85  KIWEDPWVP----RPSTFKPLRCLNNEWSLVKDLLEENGSKWRGDRLRSSLSPEDVELVM 144
           ++W+DPW+P    RP+  K +  + +    V DL+++N + W+ DRL++ + P D+ L++
Sbjct: 4   RVWKDPWIPTILARPA--KSILNIRDSLLYVNDLIDQNTNLWKLDRLQALIDPVDIPLIL 63

Query: 145 AIPISRREATDRAVWHFTNSGDFAV---------------------------------SW 204
            I  SR   +D   W  T SG++ V                                 ++
Sbjct: 64  GIRPSRTYLSDGFSWSHTKSGNYTVKSGYWVARDLSRPTCDPPFQGPGNIFPRNSLFYNF 123

Query: 205 EKIYLRMEGKDNSDEALCYLGHGLWRVWKERNAVIFKNKAPEIENNIVFTIRDVSEYRKA 228
           + ++ R       ++ L      +W +WK +N  +F+N        +V  +++ + +++A
Sbjct: 124 DFLFWRDREFGIGEKVLELFPWIIWYIWKSKNRFVFENFREPPPETLVLALQETAVWKQA 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021818901.13.1e-4036.44uncharacterized protein LOC110760860 [Prunus avium][more]
XP_009757415.16.6e-3536.62PREDICTED: uncharacterized protein LOC104210254 [Nicotiana sylvestris][more]
XP_016458490.15.6e-3441.88PREDICTED: uncharacterized protein LOC107782157 [Nicotiana tabacum][more]
XP_016455260.17.3e-3435.68PREDICTED: uncharacterized protein LOC107779354 [Nicotiana tabacum][more]
XP_008359713.21.6e-3333.88uncharacterized protein LOC103423419 [Malus domestica][more]
Match NameE-valueIdentityDescription
P932951.8e-1441.57Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
P0C2F65.0e-0930.00Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A6P5SYW21.5e-4036.44uncharacterized protein LOC110760860 OS=Prunus avium OX=42229 GN=LOC110760860 PE... [more]
A0A2N9H9S61.9e-3544.32Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36216 PE=4 SV=1[more]
A0A1U7V6R23.2e-3536.62uncharacterized protein LOC104210254 OS=Nicotiana sylvestris OX=4096 GN=LOC10421... [more]
A0A2N9GW677.2e-3541.97Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31640 PE=4 SV=1[more]
A0A2N9IMU51.2e-3445.63Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54064 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G29090.18.1e-2333.53Ribonuclease H-like superfamily protein [more]
ATMG00310.11.3e-1541.57RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT2G22440.11.1e-1121.11BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily prot... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 290..328
NoneNo IPR availablePANTHERPTHR33116:SF41SUBFAMILY NOT NAMEDcoord: 10..164
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 10..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg013169.1Spg013169.1mRNA