Spg013161 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg013161
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationscaffold1: 21005361 .. 21008446 (+)
RNA-Seq ExpressionSpg013161
SyntenySpg013161
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCAAATTACCCCCCCTTCGAGGCCCTTAGCGTCGAGGAACATGTACTAGGGTGTATGTGCGGATCGGGACAAAAGAAAATACAAAATTTTTCCCGTATCAGTGATAAGTACCAGTTAATAGGATAGAATGAATGGAAGAACTCCGTTCACTACCGAAAAATAAATAAAAAAGATTTATCGTATTCTTTTATTGTGTATAAAATTTATGGTTTCTAATATGAAATCCAATCTTGGAAATACAACATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCATTGGCAGAATGGAAAGAATTAGGAGAAGAAGAACCAGCGGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAAAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCGTCCCAAGTTGAGACCTATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACACCAGAAGAATTAGTAATGTGTTAGGAGAAATTGGTACAAGAAGCCGTGGACACACTTCTTGATAATGGAATCCACGAACACCCAATGAGGGATGGCCATAATAAGGTTTGCATTTGTTATTTTGGCACAAATCTTTTTAGTTCTTAAAAAGAAACAATTTGAGAAGGTTCAATTGTCCGAAATGAATTTCTAAATCTCTAGATTTATCAACATCAAGTTCCTCAAAGATCCCTATTCTTGGTTTCAATTTTTCCCGGTTTATCAGAACCTTTTTTTTTTCGATTTATTACATAAGTAGTGAACAAATTAATTTATAAATTTCTCTATCCATGATTCTGCTATTTACTGAAATAATGTTACTCGAATATAGGATGTATCCTTCTGGATGGGTAGAAGGAATAAGTACAATTTTGAATGTTTTACTTATGTACAAAGTCACAAACATCAGATTTCTGAAACGAGGAGGGAGGGAGGGACCTCCCCCCTCGATTTTCCGACGAGAAATCGAAGGAGGGAGGTCCCTCCCTCCCTCCTTCGATTTTCTGGCGAAACCGATGAGGGAGTCCCTCCTTGGTTTCACCGGAAGTCAAGTTTTTTTTTTTTTTTTAAAAAAAAAAGAAAGAGATAAAGGTTGGAGAAAAGGAGAAACAGAATAAGAAGAAAAGAGGAGGAAAGAAGAAGAAAAAAAAAAAAAAAACAGTCGCCAGCGGCGGCCGGCGACATGCTGAAGAAGAAGCATGAAGAAGAAAAGGTTGAAGAAGGTTGAAGAAAAGAAGAAAAAGAAGAATAATAAGAGAGAGGGAGAAATAATTAAAACAAAAATAAAATAATAATATTTTTATTTAGAAAAAGTAAAAAATAATTTTTAATATATTTTTATTTAGCAAACTGTTAGGGTTTAACAGAAAATTGGACGGAGGGACCAAAAGTGTAACGAAATCCAAACCTCAGGGATAATTTTGTTGAGTTTTAAAACTCAAGGACCAAAGTGTAACCTAACCCAAACCTTAGGGACCAAAAGTGTATTTTTCCCTATATTCTTTTGATTTTTTTTTAATTAAGTGGTTAATTTATTGCAACAAATATTCATTTAAACGACTAATGATCAATTTTACAGTTCTAACATATCAAATTATTCAAGCCATTTAACATTAAACTTTATGTATGTATGTATGTGGAGTGGGCAAGGGATGAGGTGAGAAATATGTTCCAAGTCTCTGTCTTCGTTTCACTCATAAATTTTTTTTTCTTCCACTCACTCTTCTATTTCCCATAAACGAAGATAGGGGTGAACATTACAGACCGAAAAACCAATCTGACCGACCGAACTGACGTAGGTCAGTCGATTTTCTATCAAATTTTGGTCGAAAAGAAAAACCAACTAGTCGGTCGGTTGGTGGGCCTAAAGGCCCAAACCGATCGAACTGACCAATACCCTTAAATATTTAAAAAAATAAAAAATAAATAAATAGAAAGGAAAAGTCATCTGCTCATCCATTCAGGCCATCAAGTCCATTTATTATACTTTATTACATATCTGTAGGTAATCATTACTCTTTTAAAAAAAATATATATTTTTGTTCTCAGAGCCTTTTATCTCTTTCCTTTCTCTATCTTCTTCCACACTTTCTCTCTTTCTCTTCTTTATTTTTCGGTCTCTCTCTTTTCAATCTTTTTTATTATCATTATTATTATTATTTTTTATCTTTGTTGGCAAAGAAACAAACTTCTTCACCTCGCCGGAACAACGCCTCACTTTGCTGGAGCTTAGCTTAGTGCCACCACTGTAACGCCCGTAACTTTAAGGAGAATTCAATTTATTTAGTTTGGGTGTTAATTTGTATTAAGAGGGAATTTGAATTTCAAAAAAAAAAAAAAAAAAAAAAGATAGTGAAATTTTAAAAAGGTAGGGCTGGAGTGGCACTTTGGTAATTTTTGAGAATGTTAAGCCAAACAAGCCCTAGTTCCCCTTTTTATTTTAGCTAGTGCGCAGCCCAAGGTATCTCCTTCTCTCCTTCCTCTTCTCCTCGTGAGTGCAGCCGCCAAGTTCGTGGATGCTCCTTCTTCCCCAACCGTGAGTCATCGACGGCATCCCTTCCCTTCTCCGGTTTCTCCTTCTTCTCATTCCGGCGACAATGCGTAACGGCGGCGGCGAAGCAGAGCGGTCCGGCGAGCCCTCAGCGGCGTTTCGGTTCGTGTAGGCGGAAGGGGCGGCGGTTCTTCGTGGGTTTTTCCGTTCTTCGCGTGCACTTCCGACCGGTCCGTGCGACGTCTCCGACGAAGCTGTACCAGTCTCGGTGTGCGACGGCTGCGGTTTCAACGTGCGTGACGAGTTCGTGGCGACAGAGCAGCAGGTGAGTTTTCGCGGGCGTTTGGCGTTGACGGCAACGACTTTCAGGCGGTGTGAATAG

mRNA sequence

ATGTCACCAAATTACCCCCCCTTCGAGGCCCTTAGCGTCGAGGAACATGTACTAGGGTGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCATTGGCAGAATGGAAAGAATTAGGAGAAGAAGAACCAGCGGCTAGTGCGCAGCCCAAGGTATCTCCTTCTCTCCTTCCTCTTCTCCTCGTGAGTGCAGCCGCCAAGTTCGTGGATGCTCCTTCTTCCCCAACCGCGGAAGGGGCGGCGGTTCTTCGTGGGTTTTTCCGTTCTTCGCGTGCACTTCCGACCGGTCCGTGCGACGTCTCCGACGAAGCTGTACCAGTCTCGGTGTGCGACGGCTGCGGTTTCAACGTGCGTGACGAGTTCGTGGCGACAGAGCAGCAGGTGAGTTTTCGCGGGCGTTTGGCGTTGACGGCAACGACTTTCAGGCGGTGTGAATAG

Coding sequence (CDS)

ATGTCACCAAATTACCCCCCCTTCGAGGCCCTTAGCGTCGAGGAACATGTACTAGGGTGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCATTGGCAGAATGGAAAGAATTAGGAGAAGAAGAACCAGCGGCTAGTGCGCAGCCCAAGGTATCTCCTTCTCTCCTTCCTCTTCTCCTCGTGAGTGCAGCCGCCAAGTTCGTGGATGCTCCTTCTTCCCCAACCGCGGAAGGGGCGGCGGTTCTTCGTGGGTTTTTCCGTTCTTCGCGTGCACTTCCGACCGGTCCGTGCGACGTCTCCGACGAAGCTGTACCAGTCTCGGTGTGCGACGGCTGCGGTTTCAACGTGCGTGACGAGTTCGTGGCGACAGAGCAGCAGGTGAGTTTTCGCGGGCGTTTGGCGTTGACGGCAACGACTTTCAGGCGGTGTGAATAG

Protein sequence

MSPNYPPFEALSVEEHVLGCAIREQLADLDLRLIIDYSLAEWKELGEEEPAASAQPKVSPSLLPLLLVSAAAKFVDAPSSPTAEGAAVLRGFFRSSRALPTGPCDVSDEAVPVSVCDGCGFNVRDEFVATEQQVSFRGRLALTATTFRRCE
Homology
[Close]
BLAST of Spg013161 vs. NCBI nr
Match: MBC9828788.1 (hypothetical protein [Adiantum capillus-veneris])

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-06
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 11   LSVEEHVLGCAIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
            +   + VLG AIREQLADLDLRLIIDYSL EWKELGEE PA +
Sbjct: 1894 IRARQEVLG-AIREQLADLDLRLIIDYSLVEWKELGEEGPAGN 1935

[Close]
BLAST of Spg013161 vs. NCBI nr
Match: ATV97007.1 (DNA-directed RNA polymerase beta subunit [Eschweilera wachenheimii] >ATV97098.1 DNA-directed RNA polymerase beta subunit [Eschweilera alata] >ATV98727.1 DNA-directed RNA polymerase beta subunit [Eschweilera micrantha])

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Sbjct: 199 AIREQLADLDLRIIIDYSLVEWKELGEEEPAGN 231

[Close]
BLAST of Spg013161 vs. NCBI nr
Match: ATV98369.1 (DNA-directed RNA polymerase beta subunit [Eschweilera pittieri])

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Sbjct: 199 AIREQLADLDLRIIIDYSLVEWKELGEEEPAGN 231

[Close]
BLAST of Spg013161 vs. NCBI nr
Match: YP_009430618.1 (RNA polymerase beta' subunit [Gynostemma cardiospermum] >YP_009439795.1 RNA polymerase beta' subunit [Gynostemma laxiflorum] >YP_010015130.1 RNA polymerase beta' subunit [Gynostemma yixingense] >ART65052.1 RNA polymerase beta' subunit [Gynostemma cardiospermum] >ATG86632.1 RNA polymerase beta' subunit [Gynostemma laxiflorum] >QOI14255.1 RNA polymerase beta' subunit [Gynostemma yixingense])

HSP 1 Score: 61.6 bits (148), Expect = 6.6e-06
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 6   PPFEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           P F+     E   G  AIREQLADLDLRLIIDYSL EWKELGEE PA +
Sbjct: 182 PGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGN 230

[Close]
BLAST of Spg013161 vs. NCBI nr
Match: ATV98099.1 (DNA-directed RNA polymerase beta subunit [Lecythis ampla])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLR+IIDYSL EWKELGEEEP  +
Sbjct: 199 AIREQLADLDLRIIIDYSLVEWKELGEEEPTGN 231

[Close]
BLAST of Spg013161 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-08
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLRLIIDYSL EWKELGEE PA +
Sbjct: 198 AIREQLADLDLRLIIDYSLVEWKELGEEGPAGN 230

[Close]
BLAST of Spg013161 vs. ExPASy Swiss-Prot
Match: Q589B9 (DNA-directed RNA polymerase subunit beta' OS=Silene latifolia OX=37657 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-08
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 8   FEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           F+A    E   G  AIREQLADLDLR IIDYS AEWKELGEE+P  +
Sbjct: 187 FDAFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEEDPTGN 233

[Close]
BLAST of Spg013161 vs. ExPASy Swiss-Prot
Match: Q49L07 (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLR+IIDYSL EWKELGEE P  +
Sbjct: 198 AIREQLADLDLRIIIDYSLVEWKELGEERPTGN 230

[Close]
BLAST of Spg013161 vs. ExPASy Swiss-Prot
Match: Q09X26 (DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 8   FEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           F+A    E   G  AIREQLADLDL +IIDYSL EWKELGEE P  +
Sbjct: 184 FDAFRNREISTGAGAIREQLADLDLPIIIDYSLVEWKELGEERPTVN 230

[Close]
BLAST of Spg013161 vs. ExPASy Swiss-Prot
Match: A1XGM9 (DNA-directed RNA polymerase subunit beta' OS=Ranunculus macranthus OX=334596 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-07
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLRLIID SL EWKELGEE PA +
Sbjct: 198 AIREQLADLDLRLIIDCSLLEWKELGEEGPAGN 230

[Close]
BLAST of Spg013161 vs. ExPASy TrEMBL
Match: A0A2H4NY39 (DNA-directed RNA polymerase subunit beta' OS=Eschweilera pittieri OX=1401404 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Sbjct: 199 AIREQLADLDLRIIIDYSLVEWKELGEEEPAGN 231

[Close]
BLAST of Spg013161 vs. ExPASy TrEMBL
Match: A0A2H4NUD4 (DNA-directed RNA polymerase subunit beta' OS=Eschweilera alata OX=372703 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Sbjct: 199 AIREQLADLDLRIIIDYSLVEWKELGEEEPAGN 231

[Close]
BLAST of Spg013161 vs. ExPASy TrEMBL
Match: A0A2H4NZ42 (DNA-directed RNA polymerase subunit beta' OS=Eschweilera micrantha OX=372720 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Sbjct: 199 AIREQLADLDLRIIIDYSLVEWKELGEEEPAGN 231

[Close]
BLAST of Spg013161 vs. ExPASy TrEMBL
Match: A0A2H4NU33 (DNA-directed RNA polymerase subunit beta' OS=Eschweilera wachenheimii OX=372731 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLR+IIDYSL EWKELGEEEPA +
Sbjct: 199 AIREQLADLDLRIIIDYSLVEWKELGEEEPAGN 231

[Close]
BLAST of Spg013161 vs. ExPASy TrEMBL
Match: A0A286KTW9 (DNA-directed RNA polymerase subunit beta' OS=Gynostemma cardiospermum OX=1739658 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 33/49 (67.35%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 6   PPFEALSVEEHVLGC-AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           P F+     E   G  AIREQLADLDLRLIIDYSL EWKELGEE PA +
Sbjct: 182 PGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGN 230

[Close]
BLAST of Spg013161 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 52.0 bits (123), Expect = 4.9e-07
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 21  AIREQLADLDLRLIIDYSLAEWKELGEEEPAAS 54
           AIREQLADLDLR+II+ SL EWK+LGEE P  +
Sbjct: 198 AIREQLADLDLRIIIENSLVEWKQLGEEGPTGN 230

The following BLAST results are available for this feature:
BLAST of Spg013161 vs. NCBI nr
Match NameE-valueIdentityDescription
MBC9828788.13.0e-0674.42hypothetical protein [Adiantum capillus-veneris][more]
ATV97007.13.9e-0687.88DNA-directed RNA polymerase beta subunit [Eschweilera wachenheimii] >ATV97098.1 ... [more]
ATV98369.13.9e-0687.88DNA-directed RNA polymerase beta subunit [Eschweilera pittieri][more]
YP_009430618.16.6e-0667.35RNA polymerase beta' subunit [Gynostemma cardiospermum] >YP_009439795.1 RNA poly... [more]
ATV98099.11.1e-0584.85DNA-directed RNA polymerase beta subunit [Lecythis ampla][more]
BLAST of Spg013161 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP21.9e-0887.88DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE... [more]
Q589B94.3e-0865.96DNA-directed RNA polymerase subunit beta' OS=Silene latifolia OX=37657 GN=rpoC1 ... [more]
Q49L075.6e-0881.82DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus... [more]
Q09X262.1e-0763.83DNA-directed RNA polymerase subunit beta' OS=Morus indica OX=248361 GN=rpoC1 PE=... [more]
A1XGM92.8e-0784.85DNA-directed RNA polymerase subunit beta' OS=Ranunculus macranthus OX=334596 GN=... [more]
BLAST of Spg013161 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2H4NY391.9e-0687.88DNA-directed RNA polymerase subunit beta' OS=Eschweilera pittieri OX=1401404 GN=... [more]
A0A2H4NUD41.9e-0687.88DNA-directed RNA polymerase subunit beta' OS=Eschweilera alata OX=372703 GN=rpoC... [more]
A0A2H4NZ421.9e-0687.88DNA-directed RNA polymerase subunit beta' OS=Eschweilera micrantha OX=372720 GN=... [more]
A0A2H4NU331.9e-0687.88DNA-directed RNA polymerase subunit beta' OS=Eschweilera wachenheimii OX=372731 ... [more]
A0A286KTW93.2e-0667.35DNA-directed RNA polymerase subunit beta' OS=Gynostemma cardiospermum OX=1739658... [more]
BLAST of Spg013161 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00180.14.9e-0772.73DNA-directed RNA polymerase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg013161.1Spg013161.1mRNA