Spg013125 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg013125
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationscaffold1: 19200010 .. 19202576 (-)
RNA-Seq ExpressionSpg013125
SyntenySpg013125
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTCTCTCTCGGCCCTCTGGCGTGGCCCGATGGGCGACACTCGACGTGCCACCACTTCACTGTCTGCTCAGTGAGGGTCACAACCTACTCTCTTCTAGTATGGTTGTGACACGCAGCGCCACTCACACGTGATTTCCGCGTCACGCTCCGCACTCACACCCACACGTGATTTCCTTGCCACGCTCCGCACACACACCCGACACATGATTTACGCGTCATGCTCCGCCTCTCCCCAATGCACACACACTATGCAGACACGACTAACATGCAGCATAGTCCACTAACAACAACTTTCTCAAACATAACCAAACATGCTTAAAGTACCTCATGCTTAAGGAAACAAACATATCAACATGCTTAACTCACATAACAGATTATATAAACGTATATATATCAAACACGAAACGTATAAGCAAGGAAGCAAACAAGTGACATGCTCAAGCAAACAACCAAGCTCATCCAGATAGAAACTACTTACTCAAGCTTAAAAACGCTCCTAAACCAAACTACCGTTTGCTGGAAAAATATTGAAATAGGCTCTAAGCACACCTACAAGCACAATAAAGGCGTCCTAGAAGTTAGAAAACCACCTAACAATATTCCTAACACTTGTCATAGCTTAAAAGGGACCTAGAACGTGCTGTAAGGTGCTGAAACTTACCGAACAGGGGCGGAAACCTTGCTGGAAATTACCAATCAGCACTGAAATACCTTATACATGTGCTGTCCTGAGCCCGAAATGAGTTTAAACTGTAACTAGAGGATACCCAAAGGTTAAAAAGCATTCTAAAGCTAACTAAGATAGTTCTAAAGACTTTAAGGCCACTGGAACTTACCGAACAGAACTGAACCGGGATGATTACGTGCTGTACAGTATTCGAAAGTGGCCAAAATCTGCGATTTAAGGCACAATAAAGCATGGGTAGCTTAGACTTACGCTACTTGAGTCACGGGTAACTTAAATTTGAAGCCAAAAGAGAATGGGTCAAGATAAAACTTACTAAAATCGCCCAAATAACGCCGAATGAGGGTTGGAACCACGTTGAAACCCACTAAACAAAGGCAAAATTGTGAGAGGAACGAGATTCGAGATGCTGGACACACGGGATCTGAGCGAAACGAGAGAAAAGAAAATTAGATTGAGCTTAAAGCGACCAAAGACGAGGGAGGGAGGTACTTAGGCCTAGGTATTGATTTTTGATGAAGAACAACTGGAGAAGGAGGCGACGGTGCTTGCGGGACCTACTCACCGGAGGAAGAAAAACGAAGGGGAAGGCGGCGGCGGCGTGAACAGAAAAACGGGGGAAAAAAATGGGGAAGGAAAAGGCGACGGCGGCGGCTGCTGTGCGGCTGGGAGAAGAAAAAAAAAGGGAGAAGAGATTTGGGGGGGGTCTGCCGCACGAGGGAGAGAGAGAGAGAGAGATTTCCTGTTTCTTTCTTTTCTTTTCTTTTTTTTTTTAAACCTAACAAACTCCAAAACTACCCACTAACCAAGAGAAGAAAACGCTGACCAACTTCCCCACTCAGCCTGCACGATAAACTAAAAAAAAAAATCTTAATACACAAGGAAAAAAATATCTGAATCAGCCCAACATAACGATTAATTTAAAACAAATTTGGGTTACCTGGAATGTGGGGCATCACATGCAATCTCAAAGCTTCAGTATTCTTTCTTCGCAAATTTCAGATGGGAGGTGCGCAACGGTAAATCCATCCTTTTTTGGCTCTACAACTGGTCTGTTCTTGGTCCTTTGAAATATGTTTGTGATCGTCTCTATCAGTTGTCTTCAAACAAAAATCTCACAGTTGAGGAAGCTTGGTCGATTTCGGATAGAGTGTGGAATTTTAGTCCTCGCCGGCCTCTCCTTGATAGAGAAGTTCAAAGATGGAATGAGCTGTCTGGTCTTTTACCCATTCCAGATTCTTTTCGAGGTTCTGATGTTCAACGATGGCTTGCTTCTGAAGATGACTTTTTCTCCACAAAATATGCTCGATCCATCCTATCGGTCGCACCTTCCAGACCTTTTTCCAGCCATGGTTAAAAGATCCTTGACAACCTTTGGAAAGCTGACATCCCTAAAAAAATAAAGGTTTTCATTTGGTCCCTTTTTCACAGAAGCGTCAACACGACAGATAGGCTTCAGTCAATTTTCCGAAGCTCTTTTTTCAACCCATCCATCTGCCTCCAATGCAGAATGAGTTCCGAAAATATTGATCATCTCTTAATTCATTGCTGTTGTGTGTCTTTTCTTCGGAACAAGATTTACCATGCTTTGGGTATTTTATCTGTTCCTCCAGCATCAATCCAATCCTTTTGCGAAGACTTGTTTGCTTTTAAAGCCTCATCTCAAAGGAAAATTCTTCACAGGAATATCTCTATTGCTTCCCTTTGGATTGTGTGGAATGAGCGCAACAATCGCATTTTTCAGGAAAGGGCTCGCAGTTGGACTCAACTTTGGGAGGATGTCATTTCTCTTGCCGCTCTTTGGACTACAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTACTATTGCCTTAAATTATGAATCCTTTTTGTAG

mRNA sequence

ATGGCACTTCTCTCTCGGCCCTCTGGCGTGGCCCGATGGGCGACACTCGACGTGCCACCACTTCACTGTCTGCTCAGTGAGGGTCACAACCTACTCTCTTCTAGTATGGTTGTGACACGCAGCGCCACTCACACGGACCTAGAACGTGCTGTAAGATGGGAGGTGCGCAACGGTAAATCCATCCTTTTTTGGCTCTACAACTGGTCTGTTCTTGGTCCTTTGAAATATGTTTGTGATCGTCTCTATCAGTTGTCTTCAAACAAAAATCTCACAGTTGAGGAAGCTTGGTCGATTTCGGATAGAGTGTGGAATTTTAGTCCTCGCCGGCCTCTCCTTGATAGAGAAGTTCAAAGATGGAATGAGCTGTCTGGTCTTTTACCCATTCCAGATTCTTTTCGAGGTTCTGATGTTCAACGATGGCTTGCTTCTGAAGATGACTTTTTCTCCACAAAATATGCTCGATCCATCCTATCGATTTACCATGCTTTGGGTATTTTATCTGTTCCTCCAGCATCAATCCAATCCTTTTGCGAAGACTTGTTTGCTTTTAAAGCCTCATCTCAAAGGAAAATTCTTCACAGGAATATCTCTATTGCTTCCCTTTGGATTGTGTGGAATGAGCGCAACAATCGCATTTTTCAGGAAAGGGCTCGCAGTTGGACTCAACTTTGGGAGGATGTCATTTCTCTTGCCGCTCTTTGGACTACAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTACTATTGCCTTAAATTATGAATCCTTTTTGTAG

Coding sequence (CDS)

ATGGCACTTCTCTCTCGGCCCTCTGGCGTGGCCCGATGGGCGACACTCGACGTGCCACCACTTCACTGTCTGCTCAGTGAGGGTCACAACCTACTCTCTTCTAGTATGGTTGTGACACGCAGCGCCACTCACACGGACCTAGAACGTGCTGTAAGATGGGAGGTGCGCAACGGTAAATCCATCCTTTTTTGGCTCTACAACTGGTCTGTTCTTGGTCCTTTGAAATATGTTTGTGATCGTCTCTATCAGTTGTCTTCAAACAAAAATCTCACAGTTGAGGAAGCTTGGTCGATTTCGGATAGAGTGTGGAATTTTAGTCCTCGCCGGCCTCTCCTTGATAGAGAAGTTCAAAGATGGAATGAGCTGTCTGGTCTTTTACCCATTCCAGATTCTTTTCGAGGTTCTGATGTTCAACGATGGCTTGCTTCTGAAGATGACTTTTTCTCCACAAAATATGCTCGATCCATCCTATCGATTTACCATGCTTTGGGTATTTTATCTGTTCCTCCAGCATCAATCCAATCCTTTTGCGAAGACTTGTTTGCTTTTAAAGCCTCATCTCAAAGGAAAATTCTTCACAGGAATATCTCTATTGCTTCCCTTTGGATTGTGTGGAATGAGCGCAACAATCGCATTTTTCAGGAAAGGGCTCGCAGTTGGACTCAACTTTGGGAGGATGTCATTTCTCTTGCCGCTCTTTGGACTACAAAATCAAAAGCTTTCTCTGATTATTCTGCTTCTACTATTGCCTTAAATTATGAATCCTTTTTGTAG

Protein sequence

MALLSRPSGVARWATLDVPPLHCLLSEGHNLLSSSMVVTRSATHTDLERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSILSIYHALGILSVPPASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNERNNRIFQERARSWTQLWEDVISLAALWTTKSKAFSDYSASTIALNYESFL
Homology
[Close]
BLAST of Spg013125 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 4.6e-23
Identity = 73/290 (25.17%), Postives = 117/290 (40.34%), Query Frame = 0 

Query: 51   VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRP 110
            + W+V +G+ I FWL NW+   PL  V  RL+ LS+NK  +V++ W+ S + WN    RP
Sbjct: 747  IGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRP 806

Query: 111  LLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSIL------------S 170
            L D E   W+ +   LP P   RG     W  + ++ F T   +  L            S
Sbjct: 807  LRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPS 866

Query: 171  IYHALGILSVP------------------------------------------------- 230
            +Y  L  +  P                                                 
Sbjct: 867  LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 926

Query: 231  ----------------------PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNE 258
                                  P  ++S  +++ +    +Q+ ++  N     LW +W E
Sbjct: 927  IHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLE 986

[Close]
BLAST of Spg013125 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-22
Identity = 72/290 (24.83%), Postives = 116/290 (40.00%), Query Frame = 0 

Query: 51  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRP 110
           + W+V +G+ I FWL NW+   PL     RL+ LS+NK  +V++ W+ S + WN    RP
Sbjct: 653 IGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRP 712

Query: 111 LLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSIL------------S 170
           L D E   W+ +   LP P   RG     W  + ++ F T   +  L            S
Sbjct: 713 LRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPS 772

Query: 171 IYHALGILSVP------------------------------------------------- 230
           +Y  L  +  P                                                 
Sbjct: 773 LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 832

Query: 231 ----------------------PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNE 258
                                 P  ++S  +++ +    +Q+ ++  N     LW +W E
Sbjct: 833 IHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLE 892

[Close]
BLAST of Spg013125 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 6.6e-22
Identity = 72/290 (24.83%), Postives = 115/290 (39.66%), Query Frame = 0 

Query: 51   VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRP 110
            + W+V +G+ I FWL NW+   PL     RL+ LS+NK  +V+E W+ S   W+    RP
Sbjct: 855  ISWKVNDGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRP 914

Query: 111  LLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST-------------------- 170
            L D E   W+ +   LP P   RG     W  + ++ F T                    
Sbjct: 915  LRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPN 974

Query: 171  ------------------------------------------------------------ 230
                                                                        
Sbjct: 975  LYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 1034

Query: 231  ---KYARSILSIYHALGILSVPPASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNE 258
                Y++ + S   AL   +  P  +QS  +++ +    +Q+ ++  N +   LW +W E
Sbjct: 1035 IHCPYSQQLWSKAKALLNWNSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLE 1094

[Close]
BLAST of Spg013125 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 4.0e-19
Identity = 67/293 (22.87%), Postives = 117/293 (39.93%), Query Frame = 0 

Query: 48  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSP 107
           +R V W+++NG+S  FW  +W    PL +   RL+ LS+NK+ ++ + W+ +   W+ +P
Sbjct: 251 QRHVSWKIKNGRSFSFWHSHWHQNSPLSFHYPRLFALSTNKDSSIRDMWNNTLMDWDLNP 310

Query: 108 RRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSIL---------- 167
           RR L + E   W EL   L       G D   W  + +  ++    +  L          
Sbjct: 311 RRQLREWEYPLWAELKNSLNASFCENGKDSPTWTLNSNGLYTVASVKKALQQPDQSLLDL 370

Query: 168 ---SIYHALGILSVPPASI----------------------------------------- 227
              + +  L   S+P   I                                         
Sbjct: 371 QSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDR 430

Query: 228 ------------------------------QSFCEDLFAFKASSQRKILHRNISIASLWI 257
                                         +  C  + ++K  +++ ++  N   ++LW 
Sbjct: 431 IHLFILCPIAKSIWRLISSHLNSNVNCLSPKDLCITMCSWKQKTKKNVILYNTYASALWN 490

[Close]
BLAST of Spg013125 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-18
Identity = 67/293 (22.87%), Postives = 116/293 (39.59%), Query Frame = 0 

Query: 48   ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSP 107
            +R V W+++NG+S  FW  +W    PL     RLY LS+NK  ++ + W+ +   W+ +P
Sbjct: 827  QRHVSWKIKNGRSFSFWHGHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNP 886

Query: 108  RRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSIL---------- 167
            RR L + E+  W EL   +       G D   W  + +  ++    +  L          
Sbjct: 887  RRQLREWELPLWAELKNSINASFCENGKDSPMWALNSNGLYTVASVKKALQQPEQSLLDL 946

Query: 168  ---SIYHALGILSVPPASI----------------------------------------- 227
               + +  L   S+P   I                                         
Sbjct: 947  QSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPKLCSRPSWCVMCKRNDEDR 1006

Query: 228  ------------------------------QSFCEDLFAFKASSQRKILHRNISIASLWI 257
                                          +  C  + ++K  +++ ++  N   ++LW 
Sbjct: 1007 IHLFILCPIAKSIWRTISSHLNSNVNCLSPKELCITMCSWKQKTKKNVILFNTYASALWN 1066

[Close]
BLAST of Spg013125 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-23
Identity = 73/290 (25.17%), Postives = 117/290 (40.34%), Query Frame = 0 

Query: 51   VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRP 110
            + W+V +G+ I FWL NW+   PL  V  RL+ LS+NK  +V++ W+ S + WN    RP
Sbjct: 747  IGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRP 806

Query: 111  LLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSIL------------S 170
            L D E   W+ +   LP P   RG     W  + ++ F T   +  L            S
Sbjct: 807  LRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPS 866

Query: 171  IYHALGILSVP------------------------------------------------- 230
            +Y  L  +  P                                                 
Sbjct: 867  LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 926

Query: 231  ----------------------PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNE 258
                                  P  ++S  +++ +    +Q+ ++  N     LW +W E
Sbjct: 927  IHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLE 986

[Close]
BLAST of Spg013125 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.4e-23
Identity = 72/290 (24.83%), Postives = 116/290 (40.00%), Query Frame = 0 

Query: 51  VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRP 110
           + W+V +G+ I FWL NW+   PL     RL+ LS+NK  +V++ W+ S + WN    RP
Sbjct: 653 IGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRP 712

Query: 111 LLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSIL------------S 170
           L D E   W+ +   LP P   RG     W  + ++ F T   +  L            S
Sbjct: 713 LRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPS 772

Query: 171 IYHALGILSVP------------------------------------------------- 230
           +Y  L  +  P                                                 
Sbjct: 773 LYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 832

Query: 231 ----------------------PASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNE 258
                                 P  ++S  +++ +    +Q+ ++  N     LW +W E
Sbjct: 833 IHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNTIAILLWKIWLE 892

[Close]
BLAST of Spg013125 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-22
Identity = 72/290 (24.83%), Postives = 115/290 (39.66%), Query Frame = 0 

Query: 51   VRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSPRRP 110
            + W+V +G+ I FWL NW+   PL     RL+ LS+NK  +V+E W+ S   W+    RP
Sbjct: 855  ISWKVNDGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRP 914

Query: 111  LLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFST-------------------- 170
            L D E   W+ +   LP P   RG     W  + ++ F T                    
Sbjct: 915  LRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPN 974

Query: 171  ------------------------------------------------------------ 230
                                                                        
Sbjct: 975  LYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 1034

Query: 231  ---KYARSILSIYHALGILSVPPASIQSFCEDLFAFKASSQRKILHRNISIASLWIVWNE 258
                Y++ + S   AL   +  P  +QS  +++ +    +Q+ ++  N +   LW +W E
Sbjct: 1035 IHCPYSQQLWSKAKALLNWNSTPTDVQSLIQNICSLNIRNQKGLITFNTNATILWKIWLE 1094

[Close]
BLAST of Spg013125 vs. ExPASy TrEMBL
Match: A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 67/293 (22.87%), Postives = 117/293 (39.93%), Query Frame = 0 

Query: 48  ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSP 107
           +R V W+++NG+S  FW  +W    PL +   RL+ LS+NK+ ++ + W+ +   W+ +P
Sbjct: 251 QRHVSWKIKNGRSFSFWHSHWHQNSPLSFHYPRLFALSTNKDSSIRDMWNNTLMDWDLNP 310

Query: 108 RRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSIL---------- 167
           RR L + E   W EL   L       G D   W  + +  ++    +  L          
Sbjct: 311 RRQLREWEYPLWAELKNSLNASFCENGKDSPTWTLNSNGLYTVASVKKALQQPDQSLLDL 370

Query: 168 ---SIYHALGILSVPPASI----------------------------------------- 227
              + +  L   S+P   I                                         
Sbjct: 371 QSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDR 430

Query: 228 ------------------------------QSFCEDLFAFKASSQRKILHRNISIASLWI 257
                                         +  C  + ++K  +++ ++  N   ++LW 
Sbjct: 431 IHLFILCPIAKSIWRLISSHLNSNVNCLSPKDLCITMCSWKQKTKKNVILYNTYASALWN 490

[Close]
BLAST of Spg013125 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.6e-19
Identity = 68/293 (23.21%), Postives = 116/293 (39.59%), Query Frame = 0 

Query: 48   ERAVRWEVRNGKSILFWLYNWSVLGPLKYVCDRLYQLSSNKNLTVEEAWSISDRVWNFSP 107
            +R V W+++NG+S  FW  +W    PL     RLY LS+NK  ++ + W+ +   W+ +P
Sbjct: 764  QRHVSWKIKNGRSFSFWHSHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNP 823

Query: 108  RRPLLDREVQRWNELSGLLPIPDSFRGSDVQRWLASEDDFFSTKYARSIL---------- 167
            RR L + E   W EL   L       G+D   W  + +  ++    +  L          
Sbjct: 824  RRQLREWEHPLWAELKNSLNASFCENGNDSPMWTLNSNGLYTVASVKKTLQQPEQNLLDF 883

Query: 168  ---SIYHALGILSVPPASI----------------------------------------- 227
               + +  L   S+P   I                                         
Sbjct: 884  QSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDR 943

Query: 228  ------------------------------QSFCEDLFAFKASSQRKILHRNISIASLWI 257
                                          +  C  + ++K  +++ ++  N   ++LW 
Sbjct: 944  IHLFILCPIAKSIWRSISSHLSSNVNCLSPKELCITMCSWKQKTKKNVILFNTYASALWN 1003

The following BLAST results are available for this feature:
BLAST of Spg013125 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041397.14.6e-2325.17LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044556.11.3e-2224.83LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.16.6e-2224.83LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
KAA0040037.14.0e-1922.87LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK06777.11.2e-1822.87LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
BLAST of Spg013125 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg013125 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TIB82.2e-2325.17LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR156.4e-2324.83LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I73.2e-2224.83LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TES31.9e-1922.87LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DM725.6e-1923.21LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of Spg013125 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg013125.1Spg013125.1mRNA