Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCAGACTTGTTTCGATCGGCTCTGCAACATCCCCTTAACCCAGAAGTACTTCATTGAGACGAGAGTTGACGAGACACAGTCATTTGGGTAGAGAAAATATCCAACAGAAAGGGACACTCGGCCGAAATAGCTAAGCTTGGATCAAATGGGGGCATTAATAAATTGATTGTACCTGTGGGCGAGAATAGAAAAGGATGGCAGAGCCTCATAACCAGCATTCAATCCCTCACCAACCTCAGCCAACAAGCAGTTAATGTGCCTGAAGCCCCAAATGATGGCAACCGAAATGTCTCATATAAAGATGCATTAAAGAAGAACCAAGAGGACCACCACACCCACAAACAAAAGCAAGCCTACGTAGTTGTTTCAGCCCAACCAGCCTTGACCAATCCCGAGTTCGCTGCCATCTTCTTGTCATCCTCAGTTATAATCCAAAGAAAGCACTTCCACGGTAACTGGTATGATATCATGAGAGCTCTCCAACAACATTTATCTGCCTTTGCATCAGTCAGCCCTCTCCAACCCGATAAAGCCCGGCTAGCTTGCGAGGATGAAGAACAAACCCATACCCTTGCCAAAATAAAAGGATGGTATAAGGTGGGTAAATACCAGGTCCGTTTTTACCCTTGGAGCGCCGAAACCATGGTTGGTGAACCTAAGGTTCCCTCGTATGGAGGATGGATAAAGATCAGGAACTTTCCTCTTGATAAATGGTCTATAGAAACGTTTAAGCACATTGGTGATGAATGTGGAGGGTACTTGGAAACCGCTAATAAAACCCTAGCACGTATGGACATGATGGAAGTCAGTATTAAAGTCAAGGAGAACTACACAAGCTTCATCCCAGCTGAAATTCACCTCCCATCAGCATCATCAAACCCTACGACCATCAAAATCGACCCCTTCTTCATGGAAGAATATAACATTGGTTACATTGTCGGAATACATGGCAAAATCCCTCCCAGCATGGCGAATTATGATGAGAAAGATGATCGCGACCACCCACGCGCCGCCCCAACGCGATTAGGATCCAATGAAGGTAGTAGGCTGCAGAAACCGTACAAGTGGGAAACCCAAGGCACCCCCATTGATGCAAAGTTCTCTGCTCCTGATTTGACTTCAAATGATACTACGAGAGGGGCCCACGAACATCTCCATCTCCCAAGGAGTCCCAATCCCCAAAATCCCCACCTTTCAGATATAATGGGACCCACCCATCAAAATCCCCCACTCAAGCTACGCTAGCCGACCCAATCCAAAGAAGCCCAATACCAGCCCAATCTGAGACAGTCACCCAATCAAAGAGCTCCACCCACATTAAGCCAACCCACCAGCCAGACAACCGCACGCACAGGAAAAAGCCCATCATCATTAATAACAAGGAAACCTTCCTCCTCACGGGTACAATGCACTCCACAAACTCTGAGTTACCCGTCTCTGATTCCGAAGAAGGGATGTCTTCACCTTGCTTCACAGCCATGGAAGAAACACCAATAACCACTCGAGGGGCCCCCCAAATCGCATCTCCTCCGACCATATGCAAGCTTTTCGAAGATGATCAGGAGCCGCTACAACAGATAGAAAATCTTATCCCCCTGAGAATTGAAGAACCTATTAACCGATGCTCCAACCAAAACTCTATCAGAGAAGAATCTGCTCTTATAGAGATTGATGTGGAAGATGAGGAAAACGATGCATTCCCAACAGAAGCAACAAGCACAGACCTAGCGGTTTATCTCCCTATCTTATTCCCTTGGCTAACCGAGCACGGTATGTGCATCATGCATATGCCCGGCAGACAAAAGACCTCCACTGCCACCAAGAAGAAGGTCAAATGGGTTAAGGAATTACAAAATCTCCACACATCTGTGAACTACAATAAGTCCTCTACAGGTTACATATCAACGGGGTCGTCTGCTCCATCATGATTATAATCTCTTGGAATGTTCGAGGCATGGGCTCACGGAAAAAACGAGCCCTCATTAAAGACTTTCTATCCTCCCATAATCCGACTTTGGTGATTATCCAAGAGACTAAGATGGTTAACATTACCGAGCATTATCTGGGCTTCCATTGATGTTGAAGGAGCTTCGGGCGGGATTGTTATCTTATGGAATTAATCCTCTTTTGATGTTAAGGAGATTGTCGAAGGTATGTTCTCCCTATCCCTACACCTTTCTTTATCTGATGGCTTCTCCTTCTGGATCACAGGCGTCTATGGTCCTAATTCTACCAAAGATAGACGTTTGTTTTGGAAAGAACTAGCGGATCTTCAAGCTCTTTGTCTTCCTAACTGGATATTGGGGGGTGATTTCAATGTCATTCGTTGGACTTGGGAGAAATCCACACACACAGCTCCTACCCGTGCCATGAGGAGATTCAACCGTTTCATCAATGATAATGATCTTCAAGACATCCCCCTTGCCAATGGCAAATACTCTTGGTCCAACTTTAGACCTAATCCCACCATGACCCTTATTGACAGGTTTCTTATAACCGATAGCAGTATTACCAAATTCTCTAACGCCACAGCCCGTCGATTGGACAAAATCACCTCTGATCATTTCCCTATCAGCCTCACATTGGGGAAAGAAAAATGGGGACCAGCCCCTTTTAGGCTCAACAACGTTTGGCTTAACCACAAATCCTTCCTCATTACCGTGGATTCATGGTGGAAAAACACTCCATCTAGGGGTTGGCCCGGTCATGGATTCATCCAGAAATTAAAGGATCTCAAAAAGGAGATTAAACAGTGGAATCAATCGGTTTTCGGTCAGTATAGAGAGAAAAAATCTTGCCTGAATAAAGAGCTATCTTCCTTAGACCATAGGGAGGAACACGGTCAGCTATCTGCCCACGATGCTATCAGAAGAATAGAGATCAAGGCTGAACTCATCTCTATATCGGCCAATGAAGAGATCCTGTGGAGGCAAAATTGA
mRNA sequence
ATGGCTCCAGACTTGTTTCGATCGGCTCTGCAACATCCCCTTAACCCAGAAGGACACTCGGCCGAAATAGCTAAGCTTGGATCAAATGGGGGCATTAATAAATTGATTGTACCTGTGGGCGAGAATAGAAAAGGATGGCAGAGCCTCATAACCAGCATTCAATCCCTCACCAACCTCAGCCAACAAGCAGTTAATGTGCCTGAAGCCCCAAATGATGGCAACCGAAATGTCTCATATAAAGATGCATTAAAGAAGAACCAAGAGGACCACCACACCCACAAACAAAAGCAAGCCTACGTAGTTGTTTCAGCCCAACCAGCCTTGACCAATCCCGAGTTCGCTGCCATCTTCTTGTCATCCTCAGTTATAATCCAAAGAAAGCACTTCCACGGTAACTGGTATGATATCATGAGAGCTCTCCAACAACATTTATCTGCCTTTGCATCAGTCAGCCCTCTCCAACCCGATAAAGCCCGGCTAGCTTGCGAGGATGAAGAACAAACCCATACCCTTGCCAAAATAAAAGGATGGTATAAGGTGGGTAAATACCAGGTCCGTTTTTACCCTTGGAGCGCCGAAACCATGGTTGGTGAACCTAAGGTTCCCTCGTATGGAGGATGGATAAAGATCAGGAACTTTCCTCTTGATAAATGGTCTATAGAAACGTTTAAGCACATTGGTGATGAATGTGGAGGGTACTTGGAAACCGCTAATAAAACCCTAGCACGTATGGACATGATGGAAGTCAGTATTAAAGTCAAGGAGAACTACACAAGCTTCATCCCAGCTGAAATTCACCTCCCATCAGCATCATCAAACCCTACGACCATCAAAATCGACCCCTTCTTCATGGAAGAATATAACATTGGTTACATTGTCGGAATACATGGCAAAATCCCTCCCAGCATGGCGAATTATGATGAGAAAGATGATCGCGACCACCCACGCGCCGCCCCAACGCGATTAGGATCCAATGAAGGTAGTAGGCTGCAGAAACCGTACAAGTGGGAAACCCAAGGCACCCCCATTGATGCAAAATATAATGGGACCCACCCATCAAAATCCCCCACTCAAGCTACGCTAGCCGACCCAATCCAAAGAAGCCCAATACCAGCCCAATCTGAGACAGTCACCCAATCAAAGAGCTCCACCCACATTAAGCCAACCCACCAGCCAGACAACCGCACGCACAGGAAAAAGCCCATCATCATTAATAACAAGGAAACCTTCCTCCTCACGGGTACAATGCACTCCACAAACTCTGAGTTACCCGTCTCTGATTCCGAAGAAGGGATGTCTTCACCTTGCTTCACAGCCATGGAAGAAACACCAATAACCACTCGAGGGGCCCCCCAAATCGCATCTCCTCCGACCATATGCAAGCTTTTCGAAGATGATCAGGAGCCGCTACAACAGATAGAAAATCTTATCCCCCTGAGAATTGAAGAACCTATTAACCGATGCTCCAACCAAAACTCTATCAGAGAAGAATCTGCTCTTATAGAGATTGATGTGGAAGATGAGGAAAACGATGCATTCCCAACAGAAGCAACAAGCACAGACCTAGCGGTTTATCTCCCTATCTTATTCCCTTGGCTAACCGAGCACGGTATGTGCATCATGCATATGCCCGGCAGACAAAAGACCTCCACTGCCACCAAGAAGAAGGTCAAATGGGTTAAGGAATTACAAAATCTCCACACATCTGTGAACTACAATAAGTCCTCTACAGGTTACATATCAACGGGGTCGTTTCTTATAACCGATAGCAGTATTACCAAATTCTCTAACGCCACAGCCCGTCGATTGGACAAAATCACCTCTGATCATTTCCCTATCAGCCTCACATTGGGGAAAGAAAAATGGGGACCAGCCCCTTTTAGGCTCAACAACGTTTGGCTTAACCACAAATCCTTCCTCATTACCGTGGATTCATGGTGGAAAAACACTCCATCTAGGGGTTGGCCCGGTCATGGATTCATCCAGAAATTAAAGGATCTCAAAAAGGAGATTAAACAGTGGAATCAATCGGTTTTCGGTCAGTATAGAGAGAAAAAATCTTGCCTGAATAAAGAGCTATCTTCCTTAGACCATAGGGAGGAACACGGTCAGCTATCTGCCCACGATGCTATCAGAAGAATAGAGATCAAGGCTGAACTCATCTCTATATCGGCCAATGAAGAGATCCTGTGGAGGCAAAATTGA
Coding sequence (CDS)
ATGGCTCCAGACTTGTTTCGATCGGCTCTGCAACATCCCCTTAACCCAGAAGGACACTCGGCCGAAATAGCTAAGCTTGGATCAAATGGGGGCATTAATAAATTGATTGTACCTGTGGGCGAGAATAGAAAAGGATGGCAGAGCCTCATAACCAGCATTCAATCCCTCACCAACCTCAGCCAACAAGCAGTTAATGTGCCTGAAGCCCCAAATGATGGCAACCGAAATGTCTCATATAAAGATGCATTAAAGAAGAACCAAGAGGACCACCACACCCACAAACAAAAGCAAGCCTACGTAGTTGTTTCAGCCCAACCAGCCTTGACCAATCCCGAGTTCGCTGCCATCTTCTTGTCATCCTCAGTTATAATCCAAAGAAAGCACTTCCACGGTAACTGGTATGATATCATGAGAGCTCTCCAACAACATTTATCTGCCTTTGCATCAGTCAGCCCTCTCCAACCCGATAAAGCCCGGCTAGCTTGCGAGGATGAAGAACAAACCCATACCCTTGCCAAAATAAAAGGATGGTATAAGGTGGGTAAATACCAGGTCCGTTTTTACCCTTGGAGCGCCGAAACCATGGTTGGTGAACCTAAGGTTCCCTCGTATGGAGGATGGATAAAGATCAGGAACTTTCCTCTTGATAAATGGTCTATAGAAACGTTTAAGCACATTGGTGATGAATGTGGAGGGTACTTGGAAACCGCTAATAAAACCCTAGCACGTATGGACATGATGGAAGTCAGTATTAAAGTCAAGGAGAACTACACAAGCTTCATCCCAGCTGAAATTCACCTCCCATCAGCATCATCAAACCCTACGACCATCAAAATCGACCCCTTCTTCATGGAAGAATATAACATTGGTTACATTGTCGGAATACATGGCAAAATCCCTCCCAGCATGGCGAATTATGATGAGAAAGATGATCGCGACCACCCACGCGCCGCCCCAACGCGATTAGGATCCAATGAAGGTAGTAGGCTGCAGAAACCGTACAAGTGGGAAACCCAAGGCACCCCCATTGATGCAAAATATAATGGGACCCACCCATCAAAATCCCCCACTCAAGCTACGCTAGCCGACCCAATCCAAAGAAGCCCAATACCAGCCCAATCTGAGACAGTCACCCAATCAAAGAGCTCCACCCACATTAAGCCAACCCACCAGCCAGACAACCGCACGCACAGGAAAAAGCCCATCATCATTAATAACAAGGAAACCTTCCTCCTCACGGGTACAATGCACTCCACAAACTCTGAGTTACCCGTCTCTGATTCCGAAGAAGGGATGTCTTCACCTTGCTTCACAGCCATGGAAGAAACACCAATAACCACTCGAGGGGCCCCCCAAATCGCATCTCCTCCGACCATATGCAAGCTTTTCGAAGATGATCAGGAGCCGCTACAACAGATAGAAAATCTTATCCCCCTGAGAATTGAAGAACCTATTAACCGATGCTCCAACCAAAACTCTATCAGAGAAGAATCTGCTCTTATAGAGATTGATGTGGAAGATGAGGAAAACGATGCATTCCCAACAGAAGCAACAAGCACAGACCTAGCGGTTTATCTCCCTATCTTATTCCCTTGGCTAACCGAGCACGGTATGTGCATCATGCATATGCCCGGCAGACAAAAGACCTCCACTGCCACCAAGAAGAAGGTCAAATGGGTTAAGGAATTACAAAATCTCCACACATCTGTGAACTACAATAAGTCCTCTACAGGTTACATATCAACGGGGTCGTTTCTTATAACCGATAGCAGTATTACCAAATTCTCTAACGCCACAGCCCGTCGATTGGACAAAATCACCTCTGATCATTTCCCTATCAGCCTCACATTGGGGAAAGAAAAATGGGGACCAGCCCCTTTTAGGCTCAACAACGTTTGGCTTAACCACAAATCCTTCCTCATTACCGTGGATTCATGGTGGAAAAACACTCCATCTAGGGGTTGGCCCGGTCATGGATTCATCCAGAAATTAAAGGATCTCAAAAAGGAGATTAAACAGTGGAATCAATCGGTTTTCGGTCAGTATAGAGAGAAAAAATCTTGCCTGAATAAAGAGCTATCTTCCTTAGACCATAGGGAGGAACACGGTCAGCTATCTGCCCACGATGCTATCAGAAGAATAGAGATCAAGGCTGAACTCATCTCTATATCGGCCAATGAAGAGATCCTGTGGAGGCAAAATTGA
Protein sequence
MAPDLFRSALQHPLNPEGHSAEIAKLGSNGGINKLIVPVGENRKGWQSLITSIQSLTNLSQQAVNVPEAPNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNPEFAAIFLSSSVIIQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAKIKGWYKVGKYQVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETANKTLARMDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHGKIPPSMANYDEKDDRDHPRAAPTRLGSNEGSRLQKPYKWETQGTPIDAKYNGTHPSKSPTQATLADPIQRSPIPAQSETVTQSKSSTHIKPTHQPDNRTHRKKPIIINNKETFLLTGTMHSTNSELPVSDSEEGMSSPCFTAMEETPITTRGAPQIASPPTICKLFEDDQEPLQQIENLIPLRIEEPINRCSNQNSIREESALIEIDVEDEENDAFPTEATSTDLAVYLPILFPWLTEHGMCIMHMPGRQKTSTATKKKVKWVKELQNLHTSVNYNKSSTGYISTGSFLITDSSITKFSNATARRLDKITSDHFPISLTLGKEKWGPAPFRLNNVWLNHKSFLITVDSWWKNTPSRGWPGHGFIQKLKDLKKEIKQWNQSVFGQYREKKSCLNKELSSLDHREEHGQLSAHDAIRRIEIKAELISISANEEILWRQN
Homology
BLAST of Spg012975 vs. NCBI nr
Match:
KAA0056838.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99341.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 176.0 bits (445), Expect = 1.2e-39
Identity = 210/900 (23.33%), Postives = 333/900 (37.00%), Query Frame = 0
Query: 20 SAEIAKLGSNGGINKLIVPVGENRKGWQSLITSIQSLTNLSQQAVNVP------------ 79
+AEI ++ + G ++VP G + GW+ + I ++ + +
Sbjct: 65 TAEIFRIDNKGRKCSILVPEGPDSFGWKCFLALITFRSSAPTKRIRSEIRKEPVSTFSDS 124
Query: 80 -EAPNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNPEFAAIFLS-----SS 139
+ +D +R SY L + ED + K+ +A S+ ++ F LS +
Sbjct: 125 FSSDSDSSRK-SYAKVLSDSSEDDN-KKRYKATSDDSSSRRSSSIGFKPFTLSGNSFEKT 184
Query: 140 VIIQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAK--IKGWYK 199
VII R+ FH +W IM +L++ S P Q DKA L + + GW
Sbjct: 185 VIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAILFLNSDHAKLLCSNKGANGWST 244
Query: 200 VGKYQVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETANK 259
VG YQV+F W + +PSYGGW++ R PL W+ TF+HIG CGG+L+ A +
Sbjct: 245 VGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKE 304
Query: 260 TLARMDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHGKI 319
T+ +++ IKV+ NYT F+PA I + + + + V +HG
Sbjct: 305 TMQMDKLIDAKIKVRYNYTGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSF 364
Query: 320 PPSMANYDEKDDRDHPRAAPTRLGSNEGSRLQKPYKWETQGTPIDAKYNGTHPSKSPTQA 379
A DE D +H T G + P T G + H TQA
Sbjct: 365 RTKAA--DEFDQHNHLAETYT----YNGFQAIPPEPTRTHG-DYSIHNSDKHSISYHTQA 424
Query: 380 --TLADPIQRSPIPAQSETVTQSKSSTHIKPTHQPDNRTHRKKPIIINNKETFLLTGTM- 439
+ + P Q + K + Q ++ I N K +FL G +
Sbjct: 425 KKNNSSESEYDPFDQQLSDRRKEKGKAILIINDQNHGHYSKRSKRISNRKVSFLSPGGIQ 484
Query: 440 -HSTNSEL----------PVSDSEEGMSSPCFTAMEETPITTRGAPQIASPPTICKLFED 499
+S+N+E+ ++D E SP + + PQ ++ L E
Sbjct: 485 SNSSNTEINTKGKSLEISTINDQFEKRWSPRQKTKTKLTYRIKKDPQESTEDHNLSLKET 544
Query: 500 -----------DQEPLQQIENLIPLRIEEPINRCSNQ----NSIREESA----------- 559
D P+ +E++I ++ +NQ NS +SA
Sbjct: 545 GEGSKQMNLSVDMGPISPLESMIQSENNHGLDTLNNQTPDGNSKSTDSAEAKNLTVSVKE 604
Query: 560 ------------------------LIEIDVEDEE-----------------------NDA 619
+EID +E + +
Sbjct: 605 GADQNKSASRSTAEGNSKDAKTGSEMEIDRAFKEKLVIWLKENELKLSPKYTNDVPSSSS 664
Query: 620 FPTEAT--STDLAVYLP------ILFPW----------------------LTEHGMCIMH 679
FP + + D+A + P IL W T +
Sbjct: 665 FPVIVSDQNMDIAGHGPLGDKGGILVLWDDTKFKVNDIKVGNYSISLNILNTNGNWWLTS 724
Query: 680 MPGRQKTSTATK----------------------KKVKWVKE----------LQNLHTSV 734
+ G K + TK V+W +E + N + +
Sbjct: 725 VYGPYKYNDRTKLWPELEILQSLCLPNWLIAGDFNIVRWERETNAKSLDKRNMANFNNFI 784
BLAST of Spg012975 vs. NCBI nr
Match:
TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 174.5 bits (441), Expect = 3.4e-39
Identity = 205/900 (22.78%), Postives = 331/900 (36.78%), Query Frame = 0
Query: 20 SAEIAKLGSNGGINKLIVPVGENRKGWQSLITSIQSLTNLSQQAVNVP------------ 79
+AEI ++ + G ++VP G + GW+S + I ++ + +
Sbjct: 65 TAEIFRIDNKGRKCSILVPEGPDSFGWKSFLALITFRSSAPTKRIRSEIRKEPVSTFSDS 124
Query: 80 -EAPNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNPEFAAIFLS-----SS 139
+ +D +R SY L + ED + K+ +A S+ ++ F LS +
Sbjct: 125 FSSDSDSSRK-SYAKVLSDSSEDDN-KKRYKATSDDSSSRRSSSIGFKPFTLSGNSFEKT 184
Query: 140 VIIQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAK--IKGWYK 199
VII R+ FH +W IM +L++ S P Q DKA L + + GW
Sbjct: 185 VIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAILFLNPDHAKLLCSNKGANGWST 244
Query: 200 VGKYQVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETANK 259
VG YQV+F W + +PSYGGW++ R PL W+ TF+HIG CGG+L+ A +
Sbjct: 245 VGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKE 304
Query: 260 TLARMDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHGKI 319
T+ +++ IKV+ NY F+PA I + + + + V +HG
Sbjct: 305 TMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSF 364
Query: 320 PPSMANYDEKDDRDHPRAAPTRLGSNEGSRLQKPYKWETQGTPIDAKYNGTHPSKSPTQA 379
A DE D +H T G + P T G + H TQA
Sbjct: 365 RTKAA--DEFDQHNHLAETYT----YNGFQAIPPEPTRTHG-DYSIHNSDKHSISYHTQA 424
Query: 380 --TLADPIQRSPIPAQSETVTQSKSSTHIKPTHQPDNRTHRKKPIIINNKETFLLTGTM- 439
+ + P Q + K + Q ++ I N K +FL G +
Sbjct: 425 KKNNSSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGIQ 484
Query: 440 -HSTNSEL----------PVSDSEEGMSSPCFTAMEETPITTRGAPQIASPPTICKLFED 499
+S+N+E+ ++D E SP + + PQ ++ L E
Sbjct: 485 SNSSNTEINTKGKSLEISTINDQFEKRWSPRQKTKTKLTYRIKKDPQESTEDHKLSLKET 544
Query: 500 -----------DQEPLQQIENLIPLRIEEPINRCSNQ----NSIREESA----------- 559
D P+ +E++I ++ +NQ NS +SA
Sbjct: 545 GEGSKQMNLSVDMGPISPLESMIQSENNHGLDTFNNQTPDGNSKSTDSAEAKNLTVSVKE 604
Query: 560 ------------------------LIEID----------VEDEENDAFPTEATSTDLAVY 619
+EID +++ E P + Y
Sbjct: 605 GADQNKSASRSTAEGNSKDAKTGSELEIDRAFKEKLVIWLKENELKLSPKYTNDVPSSSY 664
Query: 620 LPILF-----------PWLTEHGMCIM--------------------------------H 679
P++ P + G+ ++
Sbjct: 665 FPVIVSDQNMDIAGHGPLGDKGGILVLWDDTNFKVNDIKVGNYSISLNILNTNGNWWLTS 724
Query: 680 MPGRQKTSTATK----------------------KKVKWVKE----------LQNLHTSV 734
+ G K + TK V+W +E + N + +
Sbjct: 725 VYGPYKYNDRTKLWPELEILQSLCLPNWLIAGDFNIVRWERETNAKSLDKRNMANFNNFI 784
BLAST of Spg012975 vs. NCBI nr
Match:
KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 174.5 bits (441), Expect = 3.4e-39
Identity = 205/900 (22.78%), Postives = 331/900 (36.78%), Query Frame = 0
Query: 20 SAEIAKLGSNGGINKLIVPVGENRKGWQSLITSIQSLTNLSQQAVNVP------------ 79
+AEI ++ + G ++VP G + GW+S + I ++ + +
Sbjct: 65 TAEIFRIDNKGRKCSILVPEGPDSFGWKSFLALITFRSSAPTKRIRSEIRKEPVSTFSDS 124
Query: 80 -EAPNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNPEFAAIFLS-----SS 139
+ +D +R SY L + ED + K+ +A S+ ++ F LS +
Sbjct: 125 FSSDSDSSRK-SYAKVLSDSSEDDN-KKRYKATSDDSSSRRSSSIGFKPFTLSGNSFEKT 184
Query: 140 VIIQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAK--IKGWYK 199
VII R+ FH +W IM +L++ S P Q DKA L + + GW
Sbjct: 185 VIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAILFLNPDHAKLLCSNKGANGWST 244
Query: 200 VGKYQVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETANK 259
VG YQV+F W + +PSYGGW++ R PL W+ TF+HIG CGG+L+ A +
Sbjct: 245 VGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKE 304
Query: 260 TLARMDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHGKI 319
T+ +++ IKV+ NY F+PA I + + + + V +HG
Sbjct: 305 TMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSF 364
Query: 320 PPSMANYDEKDDRDHPRAAPTRLGSNEGSRLQKPYKWETQGTPIDAKYNGTHPSKSPTQA 379
A DE D +H T G + P T G + H TQA
Sbjct: 365 RTKAA--DEFDQHNHLAETYT----YNGFQAIPPEPTRTHG-DYSIHNSDKHSISYHTQA 424
Query: 380 --TLADPIQRSPIPAQSETVTQSKSSTHIKPTHQPDNRTHRKKPIIINNKETFLLTGTM- 439
+ + P Q + K + Q ++ I N K +FL G +
Sbjct: 425 KKNNSSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGIQ 484
Query: 440 -HSTNSEL----------PVSDSEEGMSSPCFTAMEETPITTRGAPQIASPPTICKLFED 499
+S+N+E+ ++D E SP + + PQ ++ L E
Sbjct: 485 SNSSNTEINTKGKSLEISTINDQFEKRWSPRQKTKTKLTYRIKKDPQESTEDHKLSLKET 544
Query: 500 -----------DQEPLQQIENLIPLRIEEPINRCSNQ----NSIREESA----------- 559
D P+ +E++I ++ +NQ NS +SA
Sbjct: 545 GEGSKQMNLSVDMGPISPLESMIQSENNHGLDTFNNQTPDGNSKSTDSAEAKNLTVSVKE 604
Query: 560 ------------------------LIEID----------VEDEENDAFPTEATSTDLAVY 619
+EID +++ E P + Y
Sbjct: 605 GADQNKSASRSTAEGNSKDAKTGSELEIDRAFKEKLVIWLKENELKLSPKYTNDVPSSSY 664
Query: 620 LPILF-----------PWLTEHGMCIM--------------------------------H 679
P++ P + G+ ++
Sbjct: 665 FPVIVSDQNMDIAGHGPLGDKGGILVLWDDTNFKVNDIKVGNYSISLNILNTNGNWWLTS 724
Query: 680 MPGRQKTSTATK----------------------KKVKWVKE----------LQNLHTSV 734
+ G K + TK V+W +E + N + +
Sbjct: 725 VYGPYKYNDRTKLWPELEILQSLCLPNWLIAGDFNIVRWERETNAKSLDKRNMANFNNFI 784
BLAST of Spg012975 vs. NCBI nr
Match:
KAA0039309.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 162.5 bits (410), Expect = 1.3e-35
Identity = 193/907 (21.28%), Postives = 351/907 (38.70%), Query Frame = 0
Query: 15 NPEGHSAEIAKLGSNGGINKLIVPVGENRKGWQSLITSIQSLTNLSQQAVNV------PE 74
N +G +AEI ++ + ++VP G + W S ++ I + + + PE
Sbjct: 88 NGKGCTAEIFRVDHKNRKSCILVPEGLEKSCWVSFLSMITPKVEVKAKTRPIFLPRSSPE 147
Query: 75 ---APNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNP--EFAAIFLSSSVI 134
+P SY A+ + + + S+Q + +P + L ++V+
Sbjct: 148 FRLSPPIDYHKRSYAKAVSEGRSSISSDSSDSYASSDSSQSSGNSPCDSPFPVLLENTVV 207
Query: 135 IQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAKIKGWYKVGKY 194
+ R+ FH +W I++ L++ + + +K + + L + KGW VGKY
Sbjct: 208 LVRRFFHDDWQKILQNLRKQTEESFTYNAFHAEKVLVHFNSNVPANLLCQNKGWTTVGKY 267
Query: 195 QVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETANKTLAR 254
VRF W+ + +PSYGGW R PL W++ TF+ IG CGG ++ A +T
Sbjct: 268 TVRFEKWAPASHASPKLIPSYGGWTTFRGIPLHLWNMMTFQQIGKACGGLIKVAEETKTA 327
Query: 255 MDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHGKIP-PS 314
+++E +K++ NY+ F+PA + + N +++ ++ + V +HG +
Sbjct: 328 RNLIEAKLKIRYNYSGFLPAYVKIFDQEGNKFVVQVVTHSEGKWLMERNVRLHGTFKRQA 387
Query: 315 MANYDE-KDDRDH------PRAAPTRLGSNEGSR--------------LQKPYKWETQGT 374
A++D+ D + +P L + GSR + KP K+ T T
Sbjct: 388 AASFDDFNPDSEQFLFDGLEAISPDLLNTISGSRKSISPEQPSALKSVIIKPAKYATSPT 447
Query: 375 PIDAKY---NGTHPSKSPTQATLADPI----------QRSPIPAQSETV----------- 434
++ + N H + + ++ + I Q+ IP+Q +
Sbjct: 448 TLNEEVVNDNSLHATANKSKLKILSGISNDGSLDKGKQKVDIPSQLTSAFIFYKPKRKVS 507
Query: 435 --TQSKSSTHIKPTHQPDNRTHRKKPIIINNKETFLLTGTMHSTNSELPVSDSEEG---- 494
+ S +T P P N + KK + + + T+ P + +G
Sbjct: 508 FNSPSNKTTFFNPDSAPANHSPEKKKRVSRERSVKKKSSTIQ------PKLRANQGKGNL 567
Query: 495 MSSPCFTAMEETPITTRG---APQIASPPTI--CKLFED----DQEPLQQIEN--LIP-- 554
++ P + + +G + + P + K FED D + I N ++P
Sbjct: 568 ITQPLQVVAHDLDASKKGLSLTVDLGNLPVLDPSKSFEDHHSSDNAEVIDITNTEVVPET 627
Query: 555 --LRIEEP--------INRCSNQNSIREES--ALIEIDVEDEENDAFPTE---------- 614
L++ +P +N ++S R E +D ++AF +
Sbjct: 628 PELKMTDPEKSNSSPEVNYRKQKHSHRRRHYYRKKEDKEKDTNSEAFKNQLVTWLKENGL 687
Query: 615 ----------ATSTDLAVYLP-------ILFPWLTEHGMCIMHMPGRQKTS--------- 674
AT++ A++ IL W +H + G+ S
Sbjct: 688 KLSIDTDSSGATTSTNALFSQLGSSAGGILILWDAQHHSLLSQEEGKFSLSANFSSFNNS 747
Query: 675 ---------TATKKKVKWVKELQNLH----------------------TSVNYNKSSTGY 734
++++ ++L NLH T+V ++ S+
Sbjct: 748 WWLTGLYGPVKRRERLNVWEDLHNLHHLNSSPWIIGGDLNVVRMREESTAVTFSSHSSNM 807
BLAST of Spg012975 vs. NCBI nr
Match:
TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 162.5 bits (410), Expect = 1.3e-35
Identity = 193/907 (21.28%), Postives = 351/907 (38.70%), Query Frame = 0
Query: 15 NPEGHSAEIAKLGSNGGINKLIVPVGENRKGWQSLITSIQSLTNLSQQAVNV------PE 74
N +G +AEI ++ + ++VP G + W S ++ I + + + PE
Sbjct: 88 NGKGCTAEIFRVDHKNRKSCILVPEGLEKSCWVSFLSMITPKVEVKAKTRPIFLPRSSPE 147
Query: 75 ---APNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNP--EFAAIFLSSSVI 134
+P SY A+ + + + S+Q + +P + L ++V+
Sbjct: 148 FRLSPPIDYHKRSYAKAVSEGRSSISSDSSDSYASSDSSQSSGNSPCDSPFPVLLENTVV 207
Query: 135 IQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAKIKGWYKVGKY 194
+ R+ FH +W I++ L++ + + +K + + L + KGW VGKY
Sbjct: 208 LVRRFFHDDWQKILQNLRKQTEESFTYNAFHAEKVLVHFNSNVPANLLCQNKGWTTVGKY 267
Query: 195 QVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETANKTLAR 254
VRF W+ + +PSYGGW R PL W++ TF+ IG CGG ++ A +T
Sbjct: 268 TVRFEKWAPASHASPKLIPSYGGWTTFRGIPLHLWNMMTFQQIGKACGGLIKVAEETKTA 327
Query: 255 MDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHGKIP-PS 314
+++E +K++ NY+ F+PA + + N +++ ++ + V +HG +
Sbjct: 328 RNLIEAKLKIRYNYSGFLPAYVKIFDQEGNKFVVQVVTHSEGKWLMERNVRLHGTFKRQA 387
Query: 315 MANYDE-KDDRDH------PRAAPTRLGSNEGSR--------------LQKPYKWETQGT 374
A++D+ D + +P L + GSR + KP K+ T T
Sbjct: 388 AASFDDFNPDSEQFLFDGLEAISPDLLNTISGSRKSISPEQPSALKSVIIKPAKYATSPT 447
Query: 375 PIDAKY---NGTHPSKSPTQATLADPI----------QRSPIPAQSETV----------- 434
++ + N H + + ++ + I Q+ IP+Q +
Sbjct: 448 TLNEEVVNDNSLHATANKSKLKILSGISNDGSLDKGKQKVDIPSQLTSAFIFYKPKRKVS 507
Query: 435 --TQSKSSTHIKPTHQPDNRTHRKKPIIINNKETFLLTGTMHSTNSELPVSDSEEG---- 494
+ S +T P P N + KK + + + T+ P + +G
Sbjct: 508 FNSPSNKTTFFNPDSAPANHSPEKKKRVSRERSVKKKSSTIQ------PKLRANQGKGNL 567
Query: 495 MSSPCFTAMEETPITTRG---APQIASPPTI--CKLFED----DQEPLQQIEN--LIP-- 554
++ P + + +G + + P + K FED D + I N ++P
Sbjct: 568 ITQPLQVVAHDLDASKKGLSLTVDLGNLPVLDPSKSFEDHHSSDNAEVIDITNTEVVPET 627
Query: 555 --LRIEEP--------INRCSNQNSIREES--ALIEIDVEDEENDAFPTE---------- 614
L++ +P +N ++S R E +D ++AF +
Sbjct: 628 PELKMTDPEKSNSSPEVNYRKQKHSHRRRHYYRKKEDKEKDTNSEAFKNQLVTWLKENGL 687
Query: 615 ----------ATSTDLAVYLP-------ILFPWLTEHGMCIMHMPGRQKTS--------- 674
AT++ A++ IL W +H + G+ S
Sbjct: 688 KLSIDTDSSGATTSTNALFSQLGSSAGGILILWDAQHHSLLSQEEGKFSLSANFSSFNNS 747
Query: 675 ---------TATKKKVKWVKELQNLH----------------------TSVNYNKSSTGY 734
++++ ++L NLH T+V ++ S+
Sbjct: 748 WWLTGLYGPVKRRERLNVWEDLHNLHHLNSSPWIIGGDLNVVRMREESTAVTFSSHSSNM 807
BLAST of Spg012975 vs. ExPASy TrEMBL
Match:
A0A5D3BKT8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005570 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 5.7e-40
Identity = 210/900 (23.33%), Postives = 333/900 (37.00%), Query Frame = 0
Query: 20 SAEIAKLGSNGGINKLIVPVGENRKGWQSLITSIQSLTNLSQQAVNVP------------ 79
+AEI ++ + G ++VP G + GW+ + I ++ + +
Sbjct: 65 TAEIFRIDNKGRKCSILVPEGPDSFGWKCFLALITFRSSAPTKRIRSEIRKEPVSTFSDS 124
Query: 80 -EAPNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNPEFAAIFLS-----SS 139
+ +D +R SY L + ED + K+ +A S+ ++ F LS +
Sbjct: 125 FSSDSDSSRK-SYAKVLSDSSEDDN-KKRYKATSDDSSSRRSSSIGFKPFTLSGNSFEKT 184
Query: 140 VIIQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAK--IKGWYK 199
VII R+ FH +W IM +L++ S P Q DKA L + + GW
Sbjct: 185 VIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAILFLNSDHAKLLCSNKGANGWST 244
Query: 200 VGKYQVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETANK 259
VG YQV+F W + +PSYGGW++ R PL W+ TF+HIG CGG+L+ A +
Sbjct: 245 VGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKE 304
Query: 260 TLARMDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHGKI 319
T+ +++ IKV+ NYT F+PA I + + + + V +HG
Sbjct: 305 TMQMDKLIDAKIKVRYNYTGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSF 364
Query: 320 PPSMANYDEKDDRDHPRAAPTRLGSNEGSRLQKPYKWETQGTPIDAKYNGTHPSKSPTQA 379
A DE D +H T G + P T G + H TQA
Sbjct: 365 RTKAA--DEFDQHNHLAETYT----YNGFQAIPPEPTRTHG-DYSIHNSDKHSISYHTQA 424
Query: 380 --TLADPIQRSPIPAQSETVTQSKSSTHIKPTHQPDNRTHRKKPIIINNKETFLLTGTM- 439
+ + P Q + K + Q ++ I N K +FL G +
Sbjct: 425 KKNNSSESEYDPFDQQLSDRRKEKGKAILIINDQNHGHYSKRSKRISNRKVSFLSPGGIQ 484
Query: 440 -HSTNSEL----------PVSDSEEGMSSPCFTAMEETPITTRGAPQIASPPTICKLFED 499
+S+N+E+ ++D E SP + + PQ ++ L E
Sbjct: 485 SNSSNTEINTKGKSLEISTINDQFEKRWSPRQKTKTKLTYRIKKDPQESTEDHNLSLKET 544
Query: 500 -----------DQEPLQQIENLIPLRIEEPINRCSNQ----NSIREESA----------- 559
D P+ +E++I ++ +NQ NS +SA
Sbjct: 545 GEGSKQMNLSVDMGPISPLESMIQSENNHGLDTLNNQTPDGNSKSTDSAEAKNLTVSVKE 604
Query: 560 ------------------------LIEIDVEDEE-----------------------NDA 619
+EID +E + +
Sbjct: 605 GADQNKSASRSTAEGNSKDAKTGSEMEIDRAFKEKLVIWLKENELKLSPKYTNDVPSSSS 664
Query: 620 FPTEAT--STDLAVYLP------ILFPW----------------------LTEHGMCIMH 679
FP + + D+A + P IL W T +
Sbjct: 665 FPVIVSDQNMDIAGHGPLGDKGGILVLWDDTKFKVNDIKVGNYSISLNILNTNGNWWLTS 724
Query: 680 MPGRQKTSTATK----------------------KKVKWVKE----------LQNLHTSV 734
+ G K + TK V+W +E + N + +
Sbjct: 725 VYGPYKYNDRTKLWPELEILQSLCLPNWLIAGDFNIVRWERETNAKSLDKRNMANFNNFI 784
BLAST of Spg012975 vs. ExPASy TrEMBL
Match:
A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 1.7e-39
Identity = 205/900 (22.78%), Postives = 331/900 (36.78%), Query Frame = 0
Query: 20 SAEIAKLGSNGGINKLIVPVGENRKGWQSLITSIQSLTNLSQQAVNVP------------ 79
+AEI ++ + G ++VP G + GW+S + I ++ + +
Sbjct: 65 TAEIFRIDNKGRKCSILVPEGPDSFGWKSFLALITFRSSAPTKRIRSEIRKEPVSTFSDS 124
Query: 80 -EAPNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNPEFAAIFLS-----SS 139
+ +D +R SY L + ED + K+ +A S+ ++ F LS +
Sbjct: 125 FSSDSDSSRK-SYAKVLSDSSEDDN-KKRYKATSDDSSSRRSSSIGFKPFTLSGNSFEKT 184
Query: 140 VIIQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAK--IKGWYK 199
VII R+ FH +W IM +L++ S P Q DKA L + + GW
Sbjct: 185 VIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAILFLNPDHAKLLCSNKGANGWST 244
Query: 200 VGKYQVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETANK 259
VG YQV+F W + +PSYGGW++ R PL W+ TF+HIG CGG+L+ A +
Sbjct: 245 VGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKE 304
Query: 260 TLARMDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHGKI 319
T+ +++ IKV+ NY F+PA I + + + + V +HG
Sbjct: 305 TMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSF 364
Query: 320 PPSMANYDEKDDRDHPRAAPTRLGSNEGSRLQKPYKWETQGTPIDAKYNGTHPSKSPTQA 379
A DE D +H T G + P T G + H TQA
Sbjct: 365 RTKAA--DEFDQHNHLAETYT----YNGFQAIPPEPTRTHG-DYSIHNSDKHSISYHTQA 424
Query: 380 --TLADPIQRSPIPAQSETVTQSKSSTHIKPTHQPDNRTHRKKPIIINNKETFLLTGTM- 439
+ + P Q + K + Q ++ I N K +FL G +
Sbjct: 425 KKNNSSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGIQ 484
Query: 440 -HSTNSEL----------PVSDSEEGMSSPCFTAMEETPITTRGAPQIASPPTICKLFED 499
+S+N+E+ ++D E SP + + PQ ++ L E
Sbjct: 485 SNSSNTEINTKGKSLEISTINDQFEKRWSPRQKTKTKLTYRIKKDPQESTEDHKLSLKET 544
Query: 500 -----------DQEPLQQIENLIPLRIEEPINRCSNQ----NSIREESA----------- 559
D P+ +E++I ++ +NQ NS +SA
Sbjct: 545 GEGSKQMNLSVDMGPISPLESMIQSENNHGLDTFNNQTPDGNSKSTDSAEAKNLTVSVKE 604
Query: 560 ------------------------LIEID----------VEDEENDAFPTEATSTDLAVY 619
+EID +++ E P + Y
Sbjct: 605 GADQNKSASRSTAEGNSKDAKTGSELEIDRAFKEKLVIWLKENELKLSPKYTNDVPSSSY 664
Query: 620 LPILF-----------PWLTEHGMCIM--------------------------------H 679
P++ P + G+ ++
Sbjct: 665 FPVIVSDQNMDIAGHGPLGDKGGILVLWDDTNFKVNDIKVGNYSISLNILNTNGNWWLTS 724
Query: 680 MPGRQKTSTATK----------------------KKVKWVKE----------LQNLHTSV 734
+ G K + TK V+W +E + N + +
Sbjct: 725 VYGPYKYNDRTKLWPELEILQSLCLPNWLIAGDFNIVRWERETNAKSLDKRNMANFNNFI 784
BLAST of Spg012975 vs. ExPASy TrEMBL
Match:
A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 1.7e-39
Identity = 205/900 (22.78%), Postives = 331/900 (36.78%), Query Frame = 0
Query: 20 SAEIAKLGSNGGINKLIVPVGENRKGWQSLITSIQSLTNLSQQAVNVP------------ 79
+AEI ++ + G ++VP G + GW+S + I ++ + +
Sbjct: 65 TAEIFRIDNKGRKCSILVPEGPDSFGWKSFLALITFRSSAPTKRIRSEIRKEPVSTFSDS 124
Query: 80 -EAPNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNPEFAAIFLS-----SS 139
+ +D +R SY L + ED + K+ +A S+ ++ F LS +
Sbjct: 125 FSSDSDSSRK-SYAKVLSDSSEDDN-KKRYKATSDDSSSRRSSSIGFKPFTLSGNSFEKT 184
Query: 140 VIIQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAK--IKGWYK 199
VII R+ FH +W IM +L++ S P Q DKA L + + GW
Sbjct: 185 VIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAILFLNPDHAKLLCSNKGANGWST 244
Query: 200 VGKYQVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETANK 259
VG YQV+F W + +PSYGGW++ R PL W+ TF+HIG CGG+L+ A +
Sbjct: 245 VGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDVAKE 304
Query: 260 TLARMDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHGKI 319
T+ +++ IKV+ NY F+PA I + + + + V +HG
Sbjct: 305 TMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSF 364
Query: 320 PPSMANYDEKDDRDHPRAAPTRLGSNEGSRLQKPYKWETQGTPIDAKYNGTHPSKSPTQA 379
A DE D +H T G + P T G + H TQA
Sbjct: 365 RTKAA--DEFDQHNHLAETYT----YNGFQAIPPEPTRTHG-DYSIHNSDKHSISYHTQA 424
Query: 380 --TLADPIQRSPIPAQSETVTQSKSSTHIKPTHQPDNRTHRKKPIIINNKETFLLTGTM- 439
+ + P Q + K + Q ++ I N K +FL G +
Sbjct: 425 KKNNSSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGIQ 484
Query: 440 -HSTNSEL----------PVSDSEEGMSSPCFTAMEETPITTRGAPQIASPPTICKLFED 499
+S+N+E+ ++D E SP + + PQ ++ L E
Sbjct: 485 SNSSNTEINTKGKSLEISTINDQFEKRWSPRQKTKTKLTYRIKKDPQESTEDHKLSLKET 544
Query: 500 -----------DQEPLQQIENLIPLRIEEPINRCSNQ----NSIREESA----------- 559
D P+ +E++I ++ +NQ NS +SA
Sbjct: 545 GEGSKQMNLSVDMGPISPLESMIQSENNHGLDTFNNQTPDGNSKSTDSAEAKNLTVSVKE 604
Query: 560 ------------------------LIEID----------VEDEENDAFPTEATSTDLAVY 619
+EID +++ E P + Y
Sbjct: 605 GADQNKSASRSTAEGNSKDAKTGSELEIDRAFKEKLVIWLKENELKLSPKYTNDVPSSSY 664
Query: 620 LPILF-----------PWLTEHGMCIM--------------------------------H 679
P++ P + G+ ++
Sbjct: 665 FPVIVSDQNMDIAGHGPLGDKGGILVLWDDTNFKVNDIKVGNYSISLNILNTNGNWWLTS 724
Query: 680 MPGRQKTSTATK----------------------KKVKWVKE----------LQNLHTSV 734
+ G K + TK V+W +E + N + +
Sbjct: 725 VYGPYKYNDRTKLWPELEILQSLCLPNWLIAGDFNIVRWERETNAKSLDKRNMANFNNFI 784
BLAST of Spg012975 vs. ExPASy TrEMBL
Match:
A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 5.5e-35
Identity = 89/312 (28.53%), Postives = 153/312 (49.04%), Query Frame = 0
Query: 10 LQHPLNPEGHSAEIAKLGSNGGINKLIVPVGENRKGWQSLI------------TSIQSLT 69
+Q N +G+ AEI ++ G ++VP G + GW + T+ ++L
Sbjct: 121 VQKTYNRKGYIAEIYRVDDRGRKCCILVPEGSEKSGWAQFVSLLYGKKDSSKKTNYRTLL 180
Query: 70 NLSQQAVNVPEAPNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNPEFAAIF 129
N + D + SY +A+ K + ++ ++ + +N F+ +
Sbjct: 181 NTKLKDGFSSSESGDDTKRRSYAEAVIKGSS---SDEETNSWTTNIKKTGKSNTNFSFEW 240
Query: 130 LSSSVIIQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAKIKGW 189
+V++ R+ FH +W I+ L + L P DKA + ++EEQ + + K KGW
Sbjct: 241 -ERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHADKALICFKNEEQANLICKNKGW 300
Query: 190 YKVGKYQVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETA 249
VG++ V+F W+ + +PSYGGWIK+R PL W++E+F IGD CGG++E A
Sbjct: 301 TTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVA 360
Query: 250 NKTLARMDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHG 309
+T D++E SI++K+NY+ FIPA I L + I++ ++++ IHG
Sbjct: 361 KETRELTDIIEASIRIKDNYSGFIPAFIKLFDKEEHSFIIQVIVKTEGKWHLERSPSIHG 420
BLAST of Spg012975 vs. ExPASy TrEMBL
Match:
A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 5.5e-35
Identity = 89/312 (28.53%), Postives = 153/312 (49.04%), Query Frame = 0
Query: 10 LQHPLNPEGHSAEIAKLGSNGGINKLIVPVGENRKGWQSLI------------TSIQSLT 69
+Q N +G+ AEI ++ G ++VP G + GW + T+ ++L
Sbjct: 173 VQKTYNRKGYIAEIYRVDDRGRKCCILVPEGSEKSGWAQFVSLLYGKKDSSTKTNYRTLL 232
Query: 70 NLSQQAVNVPEAPNDGNRNVSYKDALKKNQEDHHTHKQKQAYVVVSAQPALTNPEFAAIF 129
N + D + SY +A+ K + ++ ++ + +N F+ +
Sbjct: 233 NTKLKDRFSSSESGDDTKRRSYAEAVIKGSS---SDEETNSWTTNIKKTGKSNTNFSFEW 292
Query: 130 LSSSVIIQRKHFHGNWYDIMRALQQHLSAFASVSPLQPDKARLACEDEEQTHTLAKIKGW 189
+V++ R+ FH +W I+ L + L P DKA + ++EEQ + + K KGW
Sbjct: 293 -ERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHADKALICFKNEEQANLICKNKGW 352
Query: 190 YKVGKYQVRFYPWSAETMVGEPKVPSYGGWIKIRNFPLDKWSIETFKHIGDECGGYLETA 249
VG++ V+F W+ + +PSYGGWIK+R PL W++E+F IGD CGG++E A
Sbjct: 353 TTVGRFYVKFEEWNQKAHASPKVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVA 412
Query: 250 NKTLARMDMMEVSIKVKENYTSFIPAEIHLPSASSNPTTIKIDPFFMEEYNIGYIVGIHG 309
+T D++E SI++K+NY+ FIPA I L + I++ ++++ IHG
Sbjct: 413 KETRELTDIIEASIRIKDNYSGFIPAFIKLFDKEEHSFIIQVIVKTEGKWHLERSPSIHG 472
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0056838.1 | 1.2e-39 | 23.33 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... | [more] |
TYK08190.1 | 3.4e-39 | 22.78 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0057507.1 | 3.4e-39 | 22.78 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039309.1 | 1.3e-35 | 21.28 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK00493.1 | 1.3e-35 | 21.28 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BKT8 | 5.7e-40 | 23.33 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7US62 | 1.7e-39 | 22.78 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3CA17 | 1.7e-39 | 22.78 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7U495 | 5.5e-35 | 28.53 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3CFS8 | 5.5e-35 | 28.53 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |