Spg012572 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012572
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glycine rich RNA binding protein
Location	scaffold1: 13835832 .. 13838056 (-)
RNA-Seq Expression	Spg012572
Synteny	Spg012572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATATCACTTTTGGCCAACAAGCCACATGTTGTAAGAAATTAATAAAATTAAAAAAAATAAATAAATAAAAAATATTGAAATATGAGAATTAAACCAGCGCTTGTGTAAGCCAAAACCCTAACCCCTGAAAATCCAGCTCCTCTTTCTCCATCGGCTAATCGAAGATGGCTTTCCTCTCCAGTGTAAGGCGCGTTCTCAATGGATCTTCCTCCACTTCCTCCATTTTCCGATCGCAGTGGACTACCGTTCGTCTCAGCTCAACTCTTACATCGCCCAAGCTCTTCATCAGTGGTACGTTTTGCAGAAAAAGCAATCAGCTTTTCCCCTTTAATTTTGTTAATTTCACTCATCTGGATCATTGAGAATGGTATGGAGAATTGTCGTTAGGCTCAATTTTCTGTTTGGATGCTGAGAAATTTCTGAGGTTGTTGCTCACCCTTTATCTCTTACACTCAACCGGTTTTGGAGAACTAAATCAAAATGGGATCTCGTTGATCGACAATGCTCTGTTCTGTTGCATTTTCCCCCTTTATTTCTGGTTTTTCTCTTCAAGTGGATGCTTCTTTTCCTATTTGCACATTTGAAATTACTTCACTCTTTAGTAAGTGGTGGGGTTTGTTTTGGTTTGGCGTATGAAATTAGAAATGTATACCAATTATAGTTGTCACGTAGATTTGTGTCTGCTAGATATCTCGAGCAATTCCTGTATTGGAAAGTTCCAAGAAAGCTTTGCCCCAATTCATTTCTTATGCCACTCGATAAGCCCTTTTCGTTTGAAGGTTTGCAATCTGGAAGACAAACGTTCCAAAGAACGAAGGGAGTAGGTACTATGGGAGTACCAAAAATTTCCCCCGCCCCACCCCCAAAAAAGCATCCATAAACCTTCTCATTTCTGGGTTTGTATTTTTTGCCTCATTCCAGTGGAAACTGTCATATTACGGTAGTTCCTACCTATTCTATTGACTATTCACAATTTGACACATCACGAAGTGATATATTGTTTTATTTTATGAGCCTACACCATTCTTAAATGCTGACGTTGTAGCCAACACGAGTATAGTTCAACTAAAACCTGTATTAATGATTAAGAGGTCTGTGGTTCAAATTCTCCCGCCTCCAAATGTTGTAAAAATATGTTGTTGTTATAACAACCAATGAATAGAGGTGGTATGGAAGCTGCAGTACTAGAAATTTTACTTTGATGTCAAATGACCTCTATATACTGTTTTTCATGATCTAACATTCTTCATGAATCAAAGAGTAGTAGAAAATAGAAATAGATGACTAGCATCAAGGTTGATTATTTGTTGAACCATGATGAAGTATTTGATCTGTTTTTGATTGGATATGCCTGGTTAAGGTCTCATTCTTATAAAATGAACAGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGAAGGTTTAACCCTCTCTCTCTCTCTCTCTCTCTCAAATTTACAATTCTATAAACTTTTGTTGCAGAGTGCAGCATGTTGACATTGCCTCAACATTTGTACAGCCAAAGTTATAACTGATAGGGCGACGGGAAGATCGAAGGGATTCGGCTTTGTAACCTACGCTACAATAGAAGATGCCGAGAAAGCTAGAGAAGAAATGAATGCCAAGTTTCTGGATGGATGGGTAATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGATTGCTTGCAAAATCTATGAAATCTCATATCATTTGGTCATTTTTTCCAATTGCATATGGCTGAGTTTGATATAAGTTCATCATCCATGGGTACCATAGATATTAGATAAGTTTCATTAGACATCTCAAGGAGCCTCAAATAAAAACTTCCAGAAAGAGGGGTAAATTTTTGTTGTAGGTATGGATTCAGAAAAGGGGAAAGAAGTTCTTCATCAAAAGTATTTACTGACCTTAGGCTTGTTGTTCAACATATTTTAATTCCCAACATTTATAGTTATTTTGTTTTAGTCTTTATATTTAAATTATTATATTTTTATCTCTTTAAGTTATGAGTTAATTTAGCAAGGACTAAAGTATTCAAAGTTGAGACAGTTTTTAGCTCTTTGGGAAATGGTAAAAGTTGTGTTCTCTCTTCACTCTATATATATAACA

mRNA sequence

ATGGCTTTCCTCTCCAGTGTAAGGCGCGTTCTCAATGGATCTTCCTCCACTTCCTCCATTTTCCGATCGCAGTGGACTACCGTTCGTCTCAGCTCAACTCTTACATCGCCCAAGCTCTTCATCAGTGGCTCAATTTTCTGTTTGGATGCTGAGAAATTTCTGAGATATCTCGAGCAATTCCTGTATTGGAAAGTTCCAAGAAAGCTTTGCCCCAATTCATTTCTTATGCCACTCGATAAGCCCTTTTCGTTTGAAGGTTTGCAATCTGGAAGACAAACGTTCCAAAGAACGAAGGGAGTAGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGAAGCCAAAGTTATAACTGATAGGGCGACGGGAAGATCGAAGGGATTCGGCTTTGTAACCTACGCTACAATAGAAGATGCCGAGAAAGCTAGAGAAGAAATGAATGCCAAGTTTCTGGATGGATGGGTAATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGA

Coding sequence (CDS)

ATGGCTTTCCTCTCCAGTGTAAGGCGCGTTCTCAATGGATCTTCCTCCACTTCCTCCATTTTCCGATCGCAGTGGACTACCGTTCGTCTCAGCTCAACTCTTACATCGCCCAAGCTCTTCATCAGTGGCTCAATTTTCTGTTTGGATGCTGAGAAATTTCTGAGATATCTCGAGCAATTCCTGTATTGGAAAGTTCCAAGAAAGCTTTGCCCCAATTCATTTCTTATGCCACTCGATAAGCCCTTTTCGTTTGAAGGTTTGCAATCTGGAAGACAAACGTTCCAAAGAACGAAGGGAGTAGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGAAGCCAAAGTTATAACTGATAGGGCGACGGGAAGATCGAAGGGATTCGGCTTTGTAACCTACGCTACAATAGAAGATGCCGAGAAAGCTAGAGAAGAAATGAATGCCAAGTTTCTGGATGGATGGGTAATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGA

Protein sequence

MAFLSSVRRVLNGSSSTSSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLEQFLYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPPQPQSETSEFGIRTNKTIGWCG

Homology

[Close]

BLAST of Spg012572 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 237.7 bits (605), Expect = 9.0e-59
Identity = 138/204 (67.65%), Postives = 141/204 (69.12%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSST--SSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLE 60
           MAFLSSVRRVLNGSSS+  SSI +SQWTT+RLSSTLTSPKLFIS                
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFIS---------------- 60

Query: 61  QFLYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSF 120
                                                     GLSRLTTDEKLQEAFSSF
Sbjct: 61  ------------------------------------------GLSRLTTDEKLQEAFSSF 120

Query: 121 GQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRP 180
           GQLVEAKVITDRATGRSKGFGFVTYATIEDAEKARE MNAKFLDGWVIFVDPAKPREPR 
Sbjct: 121 GQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPR- 145

Query: 181 PPPQPQSETSEFGIRTNKTIGWCG 203
           PPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 181 PPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Spg012572 vs. NCBI nr
Match: XP_023517167.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-58
Identity = 133/203 (65.52%), Postives = 140/203 (68.97%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSTSSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLEQF 60
           MAF S+VRRVLNGSSS+SS+ RSQWT+ RLSSTLTSPKLFIS                  
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFIS------------------ 60

Query: 61  LYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSFGQ 120
                                                   GLSRLTTDEKLQEAF+SFGQ
Sbjct: 61  ----------------------------------------GLSRLTTDEKLQEAFTSFGQ 120

Query: 121 LVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRPPP 180
           LVEAKVITDRATGRSKGFGFVTY+TIE+AEKARE MNAKFLDGWVIFVDPAKPREPRPPP
Sbjct: 121 LVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPP 145

Query: 181 PQPQS-ETSEFGIRTNKTIGWCG 203
           PQPQS ETSEFGIRTNKTIGWCG
Sbjct: 181 PQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Spg012572 vs. NCBI nr
Match: XP_022962832.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >KAG6595304.1 Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027314.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 2.6e-58
Identity = 133/203 (65.52%), Postives = 139/203 (68.47%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSTSSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLEQF 60
           MAF S+VRRVLNGSSS+SS+ RSQWT  RLSSTLTSPKLFIS                  
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFIS------------------ 60

Query: 61  LYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSFGQ 120
                                                   GLSRLTTDEKLQEAF+SFGQ
Sbjct: 61  ----------------------------------------GLSRLTTDEKLQEAFTSFGQ 120

Query: 121 LVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRPPP 180
           LVEAKVITDRATGRSKGFGFVTY+TIE+AEKARE MNAKFLDGWVIFVDPAKPREPRPPP
Sbjct: 121 LVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPP 145

Query: 181 PQPQS-ETSEFGIRTNKTIGWCG 203
           PQPQS ETSEFGIRTNKTIGWCG
Sbjct: 181 PQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Spg012572 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 232.3 bits (591), Expect = 3.8e-57
Identity = 133/204 (65.20%), Postives = 140/204 (68.63%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSTSSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLEQF 60
           MAF S+VRRVLNGSSS+SS+ RSQWT+ RLSSTLTSPKLFIS                  
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFIS------------------ 60

Query: 61  LYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSFGQ 120
                                                   GLSRLTTDEKLQEAF+SFGQ
Sbjct: 61  ----------------------------------------GLSRLTTDEKLQEAFTSFGQ 120

Query: 121 LVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPR-PP 180
           LVEAKVITDRATGRSKGFGFVTY+TIE+AEKARE MNAKFLDGWVIFVDPAKPREPR PP
Sbjct: 121 LVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPP 146

Query: 181 PPQPQS-ETSEFGIRTNKTIGWCG 203
           PPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 181 PPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Spg012572 vs. NCBI nr
Match: XP_038881167.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-55
Identity = 132/204 (64.71%), Postives = 136/204 (66.67%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSTSSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLEQF 60
           MAF S+VRRVLNGSSS SSI RSQWT VRLSSTLTSP+LFIS                  
Sbjct: 1   MAFFSTVRRVLNGSSS-SSILRSQWTAVRLSSTLTSPRLFIS------------------ 60

Query: 61  LYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSFGQ 120
                                                   GLSRLTTDEKLQEAFSSFGQ
Sbjct: 61  ----------------------------------------GLSRLTTDEKLQEAFSSFGQ 120

Query: 121 LVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRP-- 180
           LVEAKVITDR TGRSKGFGFV+Y TIE+AEKAREEMNAKFLDGWVIFVDPAKPREPR   
Sbjct: 121 LVEAKVITDRVTGRSKGFGFVSYNTIEEAEKAREEMNAKFLDGWVIFVDPAKPREPREPR 145

Query: 181 PPPQPQSETSEFGIRTNKTIGWCG 203
           PPPQPQ ETSEFGIRTNKTIGWCG
Sbjct: 181 PPPQPQPETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Spg012572 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.6e-20
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 82  FSFEGLQSGRQTFQRTKG--------VGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATG 141
           FSF   Q+  QT  R +          GLS+ TT E L+ AF+ FG++ +AKV+TDR +G
Sbjct: 35  FSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94

Query: 142 RSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPPQPQSETS 189
            SKGFGFV YAT+ED+ K    M+ KFLDGWVIF + A+PRE +    QPQ+  S
Sbjct: 95  YSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPRE-QSQSYQPQNNMS 148

[Close]

BLAST of Spg012572 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.4e-15
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 101 GLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKF 160
           GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+A+ ++A+KA  E N + 
Sbjct: 40  GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99

Query: 161 LDGWVIFVDPAKPRE 176
           L+G  IFVD AK ++
Sbjct: 100 LNGRTIFVDYAKAKQ 114

[Close]

BLAST of Spg012572 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.2e-14
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 101 GLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKF 160
           GLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T E+A KA + M+ KF
Sbjct: 83  GLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKF 142

Query: 161 LDGWVIFVDPAKPR------EPRPPPPQPQSETSEF 191
           LDG VIFV+ AK R      +PR   P+PQS+   F
Sbjct: 143 LDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTF 178

[Close]

BLAST of Spg012572 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-13
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 101 GLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKF 160
           GL+  T +E L++AF++FGQ++++KVITDR TGRS+GFGFVT+++ +    A E MN K 
Sbjct: 14  GLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKE 73

Query: 161 LDGWVIFVDPAKPR 175
           LDG  I V+ A+ R
Sbjct: 74  LDGRNITVNQAQSR 87

[Close]

BLAST of Spg012572 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.5e-13
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 101 GLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKF 160
           GL   T D+ LQ AFS +G ++++K+ITDR TGRS+GFGFVT+A+ E   +A E MN + 
Sbjct: 12  GLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQD 71

Query: 161 LDGWVIFVDPAKPR 175
           LDG  I V+ A+ R
Sbjct: 72  LDGRNITVNEAQSR 85

[Close]

BLAST of Spg012572 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.4e-59
Identity = 138/204 (67.65%), Postives = 141/204 (69.12%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSST--SSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLE 60
           MAFLSSVRRVLNGSSS+  SSI +SQWTT+RLSSTLTSPKLFIS                
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFIS---------------- 60

Query: 61  QFLYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSF 120
                                                     GLSRLTTDEKLQEAFSSF
Sbjct: 61  ------------------------------------------GLSRLTTDEKLQEAFSSF 120

Query: 121 GQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRP 180
           GQLVEAKVITDRATGRSKGFGFVTYATIEDAEKARE MNAKFLDGWVIFVDPAKPREPR 
Sbjct: 121 GQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPR- 145

Query: 181 PPPQPQSETSEFGIRTNKTIGWCG 203
           PPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 181 PPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Spg012572 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.3e-58
Identity = 133/203 (65.52%), Postives = 139/203 (68.47%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSTSSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLEQF 60
           MAF S+VRRVLNGSSS+SS+ RSQWT  RLSSTLTSPKLFIS                  
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFIS------------------ 60

Query: 61  LYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSFGQ 120
                                                   GLSRLTTDEKLQEAF+SFGQ
Sbjct: 61  ----------------------------------------GLSRLTTDEKLQEAFTSFGQ 120

Query: 121 LVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRPPP 180
           LVEAKVITDRATGRSKGFGFVTY+TIE+AEKARE MNAKFLDGWVIFVDPAKPREPRPPP
Sbjct: 121 LVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPP 145

Query: 181 PQPQS-ETSEFGIRTNKTIGWCG 203
           PQPQS ETSEFGIRTNKTIGWCG
Sbjct: 181 PQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Spg012572 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.8e-57
Identity = 133/204 (65.20%), Postives = 140/204 (68.63%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSTSSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLEQF 60
           MAF S+VRRVLNGSSS+SS+ RSQWT+ RLSSTLTSPKLFIS                  
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFIS------------------ 60

Query: 61  LYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSFGQ 120
                                                   GLSRLTTDEKLQEAF+SFGQ
Sbjct: 61  ----------------------------------------GLSRLTTDEKLQEAFTSFGQ 120

Query: 121 LVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPR-PP 180
           LVEAKVITDRATGRSKGFGFVTY+TIE+AEKARE MNAKFLDGWVIFVDPAKPREPR PP
Sbjct: 121 LVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPP 146

Query: 181 PPQPQS-ETSEFGIRTNKTIGWCG 203
           PPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 181 PPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Spg012572 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 6.5e-55
Identity = 128/204 (62.75%), Postives = 138/204 (67.65%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGS--SSTSSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLE 60
           MAF S+VRRVL+GS  SS+SSI RSQW  VRLSSTLTSPKLFIS                
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFIS---------------- 60

Query: 61  QFLYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSF 120
                                                     GLSRLTTDEKL+EAFSSF
Sbjct: 61  ------------------------------------------GLSRLTTDEKLREAFSSF 120

Query: 121 GQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRP 180
           GQLV+AKV+TDRATGRSKGF FVTY+TIE+AE+AR+EMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 121 GQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREPR- 145

Query: 181 PPPQPQSETSEFGIRTNKTIGWCG 203
           PPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 181 PPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Spg012572 vs. ExPASy TrEMBL
Match: A0A7N2LNA5 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 3.1e-49
Identity = 117/203 (57.64%), Postives = 131/203 (64.53%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSST-SSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLEQ 60
           MAF+S +RRVL G SST SSI +S +T++R ++TLTSPKLFIS                 
Sbjct: 1   MAFVSGIRRVLGGGSSTASSILQSHYTSIRFNTTLTSPKLFIS----------------- 60

Query: 61  FLYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSFG 120
                                                    GLSRLTTD+KLQEAFS FG
Sbjct: 61  -----------------------------------------GLSRLTTDQKLQEAFSPFG 120

Query: 121 QLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRPP 180
           QLV+AKVITDRATGRSKGFGFV+YATIE+AEKARE MNAKFLDGWVIFVDPAKPREPR P
Sbjct: 121 QLVDAKVITDRATGRSKGFGFVSYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR-P 144

Query: 181 PPQPQSETSEFGIRTNKTIGWCG 203
           PPQPQ E SE G RTN+T+GWCG
Sbjct: 181 PPQPQQEPSETGFRTNRTVGWCG 144

[Close]

BLAST of Spg012572 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-42
Identity = 104/202 (51.49%), Postives = 119/202 (58.91%), Query Frame = 0


Query: 1   MAFLSSVRRVLNGSSSTSSIFRSQWTTVRLSSTLTSPKLFISGSIFCLDAEKFLRYLEQF 60
           MAF+SS RR++ GS   SS+  S    VR  STLTSP+LF+S                  
Sbjct: 1   MAFVSSFRRLVAGS---SSLLSSPSLCVRRCSTLTSPRLFVS------------------ 60

Query: 61  LYWKVPRKLCPNSFLMPLDKPFSFEGLQSGRQTFQRTKGVGLSRLTTDEKLQEAFSSFGQ 120
                                                   GLSRLTT+EKLQ+AF+SFGQ
Sbjct: 61  ----------------------------------------GLSRLTTNEKLQDAFASFGQ 120

Query: 121 LVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRPPP 180
           LV+A+VITDR +GRSKGFGFVTYATIEDAEKA+ EMNAKFLDGWVIFVDPA+PREPR P 
Sbjct: 121 LVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPL 141

Query: 181 PQ-PQSETSEFGIRTNKTIGWC 202
            Q P   +SE G  TNKTIGWC
Sbjct: 181 QQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of Spg012572 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-21
Identity = 56/115 (48.70%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 82  FSFEGLQSGRQTFQRTKG--------VGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATG 141
           FSF   Q+  QT  R +          GLS+ TT E L+ AF+ FG++ +AKV+TDR +G
Sbjct: 35  FSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94

Query: 142 RSKGFGFVTYATIEDAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPPQPQSETS 189
            SKGFGFV YAT+ED+ K    M+ KFLDGWVIF + A+PRE +    QPQ+  S
Sbjct: 95  YSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPRE-QSQSYQPQNNMS 148

[Close]

BLAST of Spg012572 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.5e-16
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 101 GLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKF 160
           GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+A+ ++A+KA  E N + 
Sbjct: 40  GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99

Query: 161 LDGWVIFVDPAKPRE 176
           L+G  IFVD AK ++
Sbjct: 100 LNGRTIFVDYAKAKQ 114

[Close]

BLAST of Spg012572 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-15
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 101 GLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKF 160
           GLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T E+A KA + M+ KF
Sbjct: 83  GLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKF 142

Query: 161 LDGWVIFVDPAKPR------EPRPPPPQPQSETSEF 191
           LDG VIFV+ AK R      +PR   P+PQS+   F
Sbjct: 143 LDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTF 178

[Close]

BLAST of Spg012572 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-14
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 101 GLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREEMNAKF 160
           GLS  T+++ L+ AF  FG+LVE K+I D+ + RSKG+ F+ Y T E A  A +EMN K 
Sbjct: 288 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKI 347

Query: 161 LDGWVIFVDPAKPREPRPPPPQP 184
           ++GW+I VD AK +  R    QP
Sbjct: 348 INGWMIVVDVAKTKPFRQNRSQP 370

The following BLAST results are available for this feature:

BLAST of Spg012572 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143719.1	9.0e-59	67.65	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_023517167.1	1.5e-58	65.52	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. ...	[more]
XP_022962832.1	2.6e-58	65.52	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >K...	[more]
XP_022972736.1	3.8e-57	65.20	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]
XP_038881167.1	1.2e-55	64.71	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]

BLAST of Spg012572 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	6.6e-20	48.70	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	6.4e-15	53.33	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FX45	9.2e-14	43.75	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q99070	2.0e-13	51.35	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
Q43472	3.5e-13	51.35	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]

BLAST of Spg012572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ59	4.4e-59	67.65	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1HDN1	1.3e-58	65.52	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A6J1I6S8	1.8e-57	65.20	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A1S3BHV3	6.5e-55	62.75	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A7N2LNA5	3.1e-49	57.64	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Spg012572 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	2.8e-42	51.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	4.7e-21	48.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	4.5e-16	53.33	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	6.5e-15	43.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	2.5e-14	46.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 101..169 e-value: 2.6E-19 score: 80.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 101..163 e-value: 6.9E-19 score: 67.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 101..173 score: 16.107859
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 100..196 e-value: 5.0E-25 score: 90.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..194
None	No IPR available	PANTHER	PTHR48029:SF3	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 78..202 coord: 1..51
None	No IPR available	PANTHER	PTHR48029	NUCLEOLAR PROTEIN 8	coord: 78..202 coord: 1..51
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 101..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012572.1	Spg012572.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding