Spg012454 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012454
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold1: 8975584 .. 8977359 (+)
RNA-Seq Expression	Spg012454
Synteny	Spg012454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAAAGAAGCAGTCGTATTCTGTGGTTGACCCACATTTTTATATTCTGTCACAAAACCCAAACCCAATCATTTTGCTTCACAGATGTGTCTTTCTGAATCCCCCACCTGCCGGTCAAAATCCAAGCTTTATCCTTCTCCGTTGTGAAGCAGGAAGGTTAGCGATTGGATTGTGTGTGTTAATGGGTAATTTGGGGTGAAATTTTATGGTTTTGGATTTGTGTTGTTATTGGGAAGGTGAGTGCTGGGTTTTGATTAGTGGTTTGGTCTGGTTGTTGTTGTGTATATAATGTTGAAGATTGGATTGATTCTTGTTATGAATGATTGAATGGGTTTTTATGATAATTATGTTGGTGATGTGATGTGATTGGATCTACCTGTCCTGCTTTGGGGGGTGGGGTTCTGTGGATCCATTCGTGTTCTCAAATGGGACACTCCTTTTCTTTGATTTTTCTTCTTCTCTATTTAATGCTCTGTTTTTTTGTTTTTTAAAAATCAAATCTTTAATTTCGGTGGGTTGATTTTTTCTTTCTGGGTTCGTGGTTCTTGAAGATGACACATCGATGGGATGGTGTTTACTGTTTTGTGGGGTACGTACGGTAGATTTATTCTTAGAAAAGTACTGTCCGGTTAAAACACAAGGAAATAGAAATTAGGGAAAAATATACTTTTGATCATTTAGATTAAGTTACACTTTGGTTTCTGAGTTTTCAAACTCAACAAAAATACCCTTAAGTTTGAGATAAGCAACATTTTGGTTCCTACCGTTGAGTTTGCCGTTAAATGCCAACGAACTGCTGACGTGACACTATTATTTTAATAAAAAAATATTAAAATAATAAAATATTCATATTTTATCCCCTTTTTTTATTCTTTTTCCCTCTCTCTTATTCTTCTCTTTCTTCCCCACTTTCTTCTCCAACTTCTTCTTCAACTCCGGTGGTCGGCCGCCGTTCGCCGGCCGGGAGTTTTTTATTTTTCCTCTCTCTCTTCTTCTCTTCTCTCCCATTTCTTCCCCTTTTCTTTTTTTTTTTAAATAAAGAAGAGGGAGGAGGAGGTTCTCCCTCCTCCCGTCCCCGCCCCCTGCATACCCCTCCACGAACGCCGCCTTGCGTCGTCGCCTGCATACCCACGAAGACCCGCATCTTCTTCTTGTTCTCCCTTCCCCTTCGTTTCAGACCGATTTCGAGAGAAAGAGAGGGTGTTCGACGCTGCAGCTAGTTCGTGGAAGGGAGAAAAAACGCGGGGGAAAGAAGGTGCTTGGCGCTGCTGCTCGGGGAAGGGAGAAACACGGAAGGGAGAGGGACACATTCCGGCGAAAAAGAAAGAAAAGAAATAAGGGATATGCTCACGATGGGTTTGCGCGAAGAGGACAAATTTCGGGCGTGCGTGGATCTTCTCACGATGGGTTCGCGCGAAGAGGACAGATTTCGGGCGTGCGTGGATCTTCTCATGATGGGTTCGCGCGGCGTGGATCTGCGAGAAAGAGAGATCGAGAGGGAAGGTTCAGCGAGAGAGAGATTCGAAGAAAAAACCACTGGAACTCGCGTCTGCTAGTACCGGAGAAGATGCACGTCGGAAGTGCGAAACGTTGCCGGAGTTGGGACTGGAGAAGCGGCAACCATCGGGTAGAAGAGAGGAAGGAGATGAGAGTGTTAAAGAAGAGAAAAGAGAAGAGAAAGAGAAAGAGAGAGAGAGAAAAAAAAGGTTGTCGGGGCCGACGAGCGGTGGTTGCCGGCCATGTGTTGAAGAAGAAGAAGATCCTTTGTTGA

mRNA sequence

ATGATTGAAAAGAAGCAGTCGTATTCTGTGGTTGACCCACATTTTTATATTCTGTCACAAAACCCAAACCCAATCATTTTGCTTCACAGATGTGTCTTTCTGAATCCCCCACCTGCCGGTCAAAATCCAAGCTTTATCCTTCTCCGTTGTGAAGCAGGAAGAAGAGGGAGGAGGAGGTTCTCCCTCCTCCCGTCCCCGCCCCCTGCATACCCCTCCACGAACGCCGCCTTGCGTCGTCGCCTGCATACCCACGAAGACCCGCATCTTCTTCTTGTTCTCCCTTCCCCTTCGTTTCAGACCGATTTCGAGAGAAAGAGAGGGTGTTCGACGCTGCAGCTAGTTCGTGGAAGGGAGAAAAAACGCGGGGGAAAGAAGGTGCTTGGCGCTGCTGCTCGGGGAAGGGAGAAACACGGAAGGGAGAGGGACACATTCCGGCGAAAAAGAAAGAAAAGAAATAAGGGATATGCTCACGATGGGTTTGCGCGAAGAGGACAAATTTCGGGCGTGCGTGGATCTTCTCACGATGGGTTCGCGCGAAGAGGACAGATTTCGGGCGTGCGTGGATCTTCTCATGATGGGTTCGCGCGGCGTGGATCTGCGAGAAAGAGAGATCGAGAGGGAAGGTTCAGCGAGAGAGAGATTCGAAGAAAAAACCACTGGAACTCGCGTCTGCTAGTACCGGAGAAGATGCACGTCGGAAGTGCGAAACGTTGCCGGAGTTGGGACTGGAGAAGCGGCAACCATCGGGTAGAAGAGAGGAAGGAGATGAGAGTGTTAAAGAAGAGAAAAGAGAAGAGAAAGAGAAAGAGAGAGAGAGAAAAAAAAGGTTGTCGGGGCCGACGAGCGGTGGTTGCCGGCCATGTGTTGAAGAAGAAGAAGATCCTTTGTTGA

Coding sequence (CDS)

ATGATTGAAAAGAAGCAGTCGTATTCTGTGGTTGACCCACATTTTTATATTCTGTCACAAAACCCAAACCCAATCATTTTGCTTCACAGATGTGTCTTTCTGAATCCCCCACCTGCCGGTCAAAATCCAAGCTTTATCCTTCTCCGTTGTGAAGCAGGAAGAAGAGGGAGGAGGAGGTTCTCCCTCCTCCCGTCCCCGCCCCCTGCATACCCCTCCACGAACGCCGCCTTGCGTCGTCGCCTGCATACCCACGAAGACCCGCATCTTCTTCTTGTTCTCCCTTCCCCTTCGTTTCAGACCGATTTCGAGAGAAAGAGAGGGTGTTCGACGCTGCAGCTAGTTCGTGGAAGGGAGAAAAAACGCGGGGGAAAGAAGGTGCTTGGCGCTGCTGCTCGGGGAAGGGAGAAACACGGAAGGGAGAGGGACACATTCCGGCGAAAAAGAAAGAAAAGAAATAAGGGATATGCTCACGATGGGTTTGCGCGAAGAGGACAAATTTCGGGCGTGCGTGGATCTTCTCACGATGGGTTCGCGCGAAGAGGACAGATTTCGGGCGTGCGTGGATCTTCTCATGATGGGTTCGCGCGGCGTGGATCTGCGAGAAAGAGAGATCGAGAGGGAAGGTTCAGCGAGAGAGAGATTCGAAGAAAAAACCACTGGAACTCGCGTCTGCTAGTACCGGAGAAGATGCACGTCGGAAGTGCGAAACGTTGCCGGAGTTGGGACTGGAGAAGCGGCAACCATCGGGTAGAAGAGAGGAAGGAGATGAGAGTGTTAAAGAAGAGAAAAGAGAAGAGAAAGAGAAAGAGAGAGAGAGAAAAAAAAGGTTGTCGGGGCCGACGAGCGGTGGTTGCCGGCCATGTGTTGAAGAAGAAGAAGATCCTTTGTTGA

Protein sequence

MIEKKQSYSVVDPHFYILSQNPNPIILLHRCVFLNPPPAGQNPSFILLRCEAGRRGRRRFSLLPSPPPAYPSTNAALRRRLHTHEDPHLLLVLPSPSFQTDFERKRGCSTLQLVRGREKKRGGKKVLGAAARGREKHGRERDTFRRKRKKRNKGYAHDGFARRGQISGVRGSSHDGFARRGQISGVRGSSHDGFARRGSARKRDREGRFSEREIRRKNHWNSRLLVPEKMHVGSAKRCRSWDWRSGNHRVEERKEMRVLKKRKEKRKRKREREKKGCRGRRAVVAGHVLKKKKILC

Homology

The following BLAST results are available for this feature:

BLAST of Spg012454 vs.


Match Name	E-value	Identity	Description

BLAST of Spg012454 vs.


Match Name	E-value	Identity	Description

BLAST of Spg012454 vs.


Match Name	E-value	Identity	Description

BLAST of Spg012454 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012454.1	Spg012454.1	mRNA