Spg012437 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012437
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	sigma factor binding protein 2, chloroplastic-like
Location	scaffold1: 19895971 .. 19896438 (+)
RNA-Seq Expression	Spg012437
Synteny	Spg012437

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCGGCGGCGCCGGCAACGGTCATACAGCTCTCGGCGGCGTCCACCGTCGAAAGCCCACAAAGAAAACGAAACTTCCCAACAAAAAGAACAAACCCATCAAAGTCGTCTACATATCCAACCCCATGAAGGTTCAAACCAGTGCCTCTGAATTCATGGCTTTAGTTCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAAGTTCGCCGCCGCCCCCGACCTCCTCCACTGCACGGCTGCCGGCGCCGGCGACGACGACGGCAATCCGACGATGGATAATAATACTGGCCCTTCACTTGCTGCCGACCTGCCGGCGGAGGACGACCTTCTTCTTCGTAGCTTTTATGACGATTTTGATGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCCGGGTTGCTCCCGGCGGCGGCGGCGGCGGCGGTGATTTGTGAATCTTATGCAAGGTGA

mRNA sequence

ATGGACGGCGGCGGCGCCGGCAACGGTCATACAGCTCTCGGCGGCGTCCACCGTCGAAAGCCCACAAAGAAAACGAAACTTCCCAACAAAAAGAACAAACCCATCAAAGTCGTCTACATATCCAACCCCATGAAGGTTCAAACCAGTGCCTCTGAATTCATGGCTTTAGTTCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAAGTTCGCCGCCGCCCCCGACCTCCTCCACTGCACGGCTGCCGGCGCCGGCGACGACGACGGCAATCCGACGATGGATAATAATACTGGCCCTTCACTTGCTGCCGACCTGCCGGCGGAGGACGACCTTCTTCTTCGTAGCTTTTATGACGATTTTGATGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCCGGGTTGCTCCCGGCGGCGGCGGCGGCGGCGGTGATTTGTGAATCTTATGCAAGGTGA

Coding sequence (CDS)

ATGGACGGCGGCGGCGCCGGCAACGGTCATACAGCTCTCGGCGGCGTCCACCGTCGAAAGCCCACAAAGAAAACGAAACTTCCCAACAAAAAGAACAAACCCATCAAAGTCGTCTACATATCCAACCCCATGAAGGTTCAAACCAGTGCCTCTGAATTCATGGCTTTAGTTCAAGAACTCACCGGCCAAGACGCCGACTTTCCCGACCCCTCTAAGTTCGCCGCCGCCCCCGACCTCCTCCACTGCACGGCTGCCGGCGCCGGCGACGACGACGGCAATCCGACGATGGATAATAATACTGGCCCTTCACTTGCTGCCGACCTGCCGGCGGAGGACGACCTTCTTCTTCGTAGCTTTTATGACGATTTTGATGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCCGGGTTGCTCCCGGCGGCGGCGGCGGCGGCGGTGATTTGTGAATCTTATGCAAGGTGA

Protein sequence

MDGGGAGNGHTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKFAAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLPAEDDLLLRSFYDDFDDLIFPPPVIGNFSGLLPAAAAAAVICESYAR

Homology

[Close]

BLAST of Spg012437 vs. NCBI nr
Match: XP_022931925.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595416.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.9 bits (520), Expect = 5.0e-49
Identity = 116/165 (70.30%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 1   MDGGGAGNG----HTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMAL 60
           MDGGG G G    HT+LGGV RRKPTKKTK PN K KPIKVVYISNPMKV+TSAS+FMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQELTGQDADFPDPSKF-------AAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLP 120
           VQELTGQDADFPDPSKF        A PDLLH T A AG D  +  M+NN   +L  +LP
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTA-AGQDYDSLMMNNNIPTTLGVELP 120

Query: 121 AEDDLLLRSFYDDFDDLIFPPPVIGNFSGLLPAAAAAAVICESYA 155
           AE D L+ SFYDDFDDLI PPP+IGNFSG LPAA AAAV+ ESYA
Sbjct: 121 AE-DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA 163

[Close]

BLAST of Spg012437 vs. NCBI nr
Match: XP_023518833.1 (uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 117/166 (70.48%), Postives = 126/166 (75.90%), Query Frame = 0


Query: 1   MDGGGAG---NGHTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALV 60
           MDGGG G   N HT+LGGV RRKPTKKT  PN K KPIKVVYISNPMKV+TSAS+FMALV
Sbjct: 1   MDGGGGGGNRNDHTSLGGVRRRKPTKKTNQPNNKKKPIKVVYISNPMKVKTSASKFMALV 60

Query: 61  QELTGQDADFPDPSKF-------AAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLPA 120
           QELTGQDADFPDPSKF        A PDLLH TAA A  D  + TM+NN   +L  +LPA
Sbjct: 61  QELTGQDADFPDPSKFHSSDVDAGATPDLLHSTAAAAAQDYDSLTMNNNIPTTLGVELPA 120

Query: 121 EDDLLLRSFYDDFDDLIFPPPVIGNFSGLLPA--AAAAAVICESYA 155
           E D LL SFYDDFDDLI PPP+IGNFS  LPA  AAAAAV+ ESYA
Sbjct: 121 E-DYLLGSFYDDFDDLILPPPLIGNFSEFLPAAEAAAAAVMYESYA 165

[Close]

BLAST of Spg012437 vs. NCBI nr
Match: KAG7027424.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.1 bits (510), Expect = 7.2e-48
Identity = 117/169 (69.23%), Postives = 127/169 (75.15%), Query Frame = 0


Query: 1   MDGGGAGNG----HTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMAL 60
           MDGGG G G    HT+LGGV RRKPTKKTK PN K KPIKVVYISNPMKV+TSAS+FMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQELTGQDADFPDPSKF-------AAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLP 120
           VQELTGQDADFPDPSKF        A PDLLH T A AG D  +  M+NN   +L  +LP
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTA-AGQDYDSLMMNNNIPTTLGVELP 120

Query: 121 AEDDLLLRSFYDDFDDLIFPPPVIGNFSGLLP----AAAAAAVICESYA 155
           AE D L+ SFYDDFDDLI PPP+IGNFSG LP    AAAAAAV+ ESYA
Sbjct: 121 AE-DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAAAAAVMYESYA 167

[Close]

BLAST of Spg012437 vs. NCBI nr
Match: XP_022966643.1 (uncharacterized protein LOC111466266 [Cucurbita maxima])

HSP 1 Score: 198.0 bits (502), Expect = 6.1e-47
Identity = 115/166 (69.28%), Postives = 125/166 (75.30%), Query Frame = 0


Query: 1   MDGGGAG---NGHTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALV 60
           MDGGG G   N HT LGGV RRKPTKKTK PN K KPIKVVYISNPMKV+TSAS FMALV
Sbjct: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60

Query: 61  QELTGQDADFPDPSKF-------AAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLPA 120
           QELTGQDADFPDPSKF        A P LLH TAA AG + G+  M+NN   +L  +LPA
Sbjct: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAA-AGQEYGSLMMNNNIPTTLGVELPA 120

Query: 121 EDDLLLRSFYDDFDDLIFPPPVIGNFSGLLPA--AAAAAVICESYA 155
           E D L+ SFYDDFDDLI PPP+IGNFSG LPA  A AAA++ ESYA
Sbjct: 121 E-DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 164

[Close]

BLAST of Spg012437 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46
Identity = 114/163 (69.94%), Postives = 126/163 (77.30%), Query Frame = 0


Query: 3   GGGAGNGHTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           G   GN H  L  V+RRKPTKKTK PNKK KPIKVVYISNPMKVQTSAS+FMALVQELTG
Sbjct: 4   GADTGNNHRILDAVNRRKPTKKTKQPNKK-KPIKVVYISNPMKVQTSASKFMALVQELTG 63

Query: 63  QDADFPDPSKF--------AAAPDLLHCTAAGAGDDD--GNPTMDNNTGPSLAADLPAED 122
           +DADFPDPSKF        AA+ DLLH TA+G GDD+   +  + NN   SLA +LP +D
Sbjct: 64  RDADFPDPSKFSPSAVCGGAASSDLLHNTASGGGDDEHGASNLIMNNNNCSLAVELPVDD 123

Query: 123 DLLLRSFYDDFDDLIFPPPVIGNFSGLLPAAAAAAVICESYAR 156
           D +L SFYDDFDDLIFPPPVIGNFSGLLP  AAAAV+ ESYAR
Sbjct: 124 D-ILGSFYDDFDDLIFPPPVIGNFSGLLP--AAAAVVYESYAR 162

[Close]

BLAST of Spg012437 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 19 RKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQDA 66
          RK  K+ K     NKPIKV YISNPM+VQT AS+F  LVQELTGQDA
Sbjct: 24 RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of Spg012437 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-07
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 19 RKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQD-ADF-PDPSKFAA 76
          R P K+ +     +KPIKV YISNPM+V+T  S+F  LVQELTGQD AD  P P+ F A
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTA 79

[Close]

BLAST of Spg012437 vs. ExPASy TrEMBL
Match: A0A6J1F0S9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438200 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.4e-49
Identity = 116/165 (70.30%), Postives = 126/165 (76.36%), Query Frame = 0


Query: 1   MDGGGAGNG----HTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMAL 60
           MDGGG G G    HT+LGGV RRKPTKKTK PN K KPIKVVYISNPMKV+TSAS+FMAL
Sbjct: 1   MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMAL 60

Query: 61  VQELTGQDADFPDPSKF-------AAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLP 120
           VQELTGQDADFPDPSKF        A PDLLH T A AG D  +  M+NN   +L  +LP
Sbjct: 61  VQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTA-AGQDYDSLMMNNNIPTTLGVELP 120

Query: 121 AEDDLLLRSFYDDFDDLIFPPPVIGNFSGLLPAAAAAAVICESYA 155
           AE D L+ SFYDDFDDLI PPP+IGNFSG LPAA AAAV+ ESYA
Sbjct: 121 AE-DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA 163

[Close]

BLAST of Spg012437 vs. ExPASy TrEMBL
Match: A0A6J1HSP6 (uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.9e-47
Identity = 115/166 (69.28%), Postives = 125/166 (75.30%), Query Frame = 0


Query: 1   MDGGGAG---NGHTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALV 60
           MDGGG G   N HT LGGV RRKPTKKTK PN K KPIKVVYISNPMKV+TSAS FMALV
Sbjct: 1   MDGGGGGGNLNDHTDLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASNFMALV 60

Query: 61  QELTGQDADFPDPSKF-------AAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLPA 120
           QELTGQDADFPDPSKF        A P LLH TAA AG + G+  M+NN   +L  +LPA
Sbjct: 61  QELTGQDADFPDPSKFDSSDEVAGATPGLLHSTAA-AGQEYGSLMMNNNIPTTLGVELPA 120

Query: 121 EDDLLLRSFYDDFDDLIFPPPVIGNFSGLLPA--AAAAAVICESYA 155
           E D L+ SFYDDFDDLI PPP+IGNFSG LPA  A AAA++ ESYA
Sbjct: 121 E-DFLVGSFYDDFDDLILPPPLIGNFSGFLPAAEATAAAMMYESYA 164

[Close]

BLAST of Spg012437 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.1e-44
Identity = 108/161 (67.08%), Postives = 116/161 (72.05%), Query Frame = 0


Query: 3   GGGAGNGHTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           G G GN H  L GVHRRKPTKKTK PN KNKPIKVVYISNPMKVQ SAS FMALVQ+LTG
Sbjct: 6   GTGTGNSHRLLDGVHRRKPTKKTKQPN-KNKPIKVVYISNPMKVQISASGFMALVQQLTG 65

Query: 63  QDADFPDPSKF--------AAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLPAEDDL 122
           QDADFPDPS F        AA PD+ + TA      D N  + NN  PSL  ++P EDD 
Sbjct: 66  QDADFPDPSTFPPAAVRDAAAFPDIHNTTA------DAN--LMNNNNPSLTVEIPMEDDP 125

Query: 123 LLRSFYDDFDDLIFPPPVIGNFSGLLPAAAAAAVICESYAR 156
            L SFYDD DDLIFPPPVIGN+  LLPAAAA AV+ ESYAR
Sbjct: 126 FLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of Spg012437 vs. ExPASy TrEMBL
Match: A0A6J1HS32 (sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.9e-44
Identity = 108/156 (69.23%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 3   GGGAGNGHTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           G G GN H  L GVHRRKPTKKTK PN KNKPIKVVYISNPMKVQ SAS FMALVQ+LTG
Sbjct: 6   GTGTGNSHRLLDGVHRRKPTKKTKQPN-KNKPIKVVYISNPMKVQISASGFMALVQQLTG 65

Query: 63  QDADFPDPSKF---AAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLPAEDDLLLRSF 122
           QDA+FPD SKF   AA PD+   TA      D N  M+NN  PSL  + P EDD LL +F
Sbjct: 66  QDAEFPDSSKFPPAAAFPDIHDTTA------DANLMMNNN--PSLTVEPPMEDDPLLGTF 125

Query: 123 YDDFDDLIFPPPVIGNFSGLLPAAAAAAVICESYAR 156
           YDD DDLIFPPPVIGN+  LLPAAAA AV+ ESYAR
Sbjct: 126 YDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Spg012437 vs. ExPASy TrEMBL
Match: A0A6J1HWH9 (sigma factor binding protein 2, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467277 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.9e-44
Identity = 108/156 (69.23%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 3   GGGAGNGHTALGGVHRRKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           G G GN H  L GVHRRKPTKKTK PN KNKPIKVVYISNPMKVQ SAS FMALVQ+LTG
Sbjct: 6   GTGTGNSHRLLDGVHRRKPTKKTKQPN-KNKPIKVVYISNPMKVQISASGFMALVQQLTG 65

Query: 63  QDADFPDPSKF---AAAPDLLHCTAAGAGDDDGNPTMDNNTGPSLAADLPAEDDLLLRSF 122
           QDA+FPD SKF   AA PD+   TA      D N  M+NN  PSL  + P EDD LL +F
Sbjct: 66  QDAEFPDSSKFPPAAAFPDIHDTTA------DANLMMNNN--PSLTVEPPMEDDPLLGTF 125

Query: 123 YDDFDDLIFPPPVIGNFSGLLPAAAAAAVICESYAR 156
           YDD DDLIFPPPVIGN+  LLPAAAA AV+ ESYAR
Sbjct: 126 YDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 152

[Close]

BLAST of Spg012437 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 19 RKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQDA 66
          RK  K+ K     NKPIKV YISNPM+VQT AS+F  LVQELTGQDA
Sbjct: 24 RKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of Spg012437 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-08
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 19 RKPTKKTKLPNKKNKPIKVVYISNPMKVQTSASEFMALVQELTGQD-ADF-PDPSKFAA 76
          R P K+ +     +KPIKV YISNPM+V+T  S+F  LVQELTGQD AD  P P+ F A
Sbjct: 21 RIPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTA 79

The following BLAST results are available for this feature:

BLAST of Spg012437 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931925.1	5.0e-49	70.30	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6595...	[more]
XP_023518833.1	1.1e-48	70.48	uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo]	[more]
KAG7027424.1	7.2e-48	69.23	Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_022966643.1	6.1e-47	69.28	uncharacterized protein LOC111466266 [Cucurbita maxima]	[more]
XP_038882812.1	2.3e-46	69.94	sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]	[more]

BLAST of Spg012437 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	2.6e-08	68.09	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	6.4e-07	55.93	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Spg012437 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0S9	2.4e-49	70.30	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HSP6	2.9e-47	69.28	uncharacterized protein LOC111466266 OS=Cucurbita maxima OX=3661 GN=LOC111466266...	[more]
A0A6J1EY87	3.1e-44	67.08	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HS32	8.9e-44	69.23	sigma factor binding protein 2, chloroplastic-like isoform X1 OS=Cucurbita maxim...	[more]
A0A6J1HWH9	8.9e-44	69.23	sigma factor binding protein 2, chloroplastic-like isoform X2 OS=Cucurbita maxim...	[more]

BLAST of Spg012437 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	1.8e-09	68.09	sigma factor binding protein 1	[more]
AT2G41180.1	4.5e-08	55.93	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 e-value: 9.3E-13 score: 47.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..103
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..143
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012437.1	Spg012437.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity