Spg012347 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012347
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	H/ACA ribonucleoprotein complex subunit
Location	scaffold1: 17257836 .. 17260646 (+)
RNA-Seq Expression	Spg012347
Synteny	Spg012347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTCATTTAACAAAAGTTAAATGCATTTCAAAACTTGATAATTTCTACACAATTTTTTTTTTTGAGTTTTGAAAATATGGAGAAGAAGATTCAAAATCATAACTTCTTTAGTAAGATATATGTCTTAGACTAGTAGAATCATGCTTAGATTGACTACTTTTTTTTTTTTTGGTAGGTTATTAAATTTTAGGTAAGTGACTATCATGGATTGAACCCATTCACTTATCTTTATTTTTTCCACGACCTTTGTTGATCATTAACATACTTTTTATTTAATGCAAAGTTTAAGGAAAAATAAATTGTTTTTTTCAAGATTAGGCACTTAAACCAACCCTATGATAATTTTTTTTTTTTCGTATAAAACTTGATGAATAAAAATAAGATTAAAAAAGAAAAAAGAAAAAGGAAATAAAAGAAAAAAGAAAAAAACTCAATGGGCAGTGGGTCACTTTATTTACCGCTAAACCACACCCATAAAACCCTAAAAACCCTACACGACATTCTGCAGCCAGCCTCCGATCAAAAAAGCTCCCTCATTTTTGCACAGCGAGAGCAGAAGAATGCGACCTCCAAGAGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGAGGAGGAGGCGGCCGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGAGGCGGCGGCGGGTTCCGTGATGAGGGTCCTCCGTCTGAAGTAGTTGGTTCGTATCTTCCATTACTTCATAAATCATTCACTACTCTCTGCATTCCTTCATCTTTCGTGTTTCTATGCTATCGGGATTATTTCAGGGTAGTGGTTTCCTAAAATAGTTCTGTTTCCCACGTTTTCGTTACAATGCGATGTTCATTTGGGCTCCTTAAGACTAACTATATTTAGATGTTGTGGATATTTGCGCTTTCATAAACGGAATAGACGATGGATTCTGTTTTTGAACTCTCCCTTTCTCTCTAGCCGTTTGAACTATGAAGTTTCAGAAGTCTAAGAATGAATGTACTCAAGTTTGGTTGTCTAATTTTCTCTAGGATAGTTTTTGTTTTGTTCAGTCCTGTTTTCTACTTTGGTTTTTACTGTATTAATCACTATAAGGATTTTTCTGTTGCAGAGGTTTCGACTTTTCTTCACGCATGTGAGGGAGACGCAGTCACAAGGCTCACGAATGAGAAGATTCCTTTCTTCAATGCCCCAATCTATCTTCAGAATAAGACCCAGATAGGCAAAGTTGATGAAATTTTCGGCCCCATTAATGAATCTGTGAGTCCACTGGCCTTCTTGGCTTTGTCACTCGTTTAGTCTTGGATATAGTTTTGATATATGATAAACCCTTGATTTTCTTTACCTGAGTGCAGTATTTCTCGATCAAAATGATGGAAGGAATTGTCGCCACCTCATATTCTTCTGGGGATAAATTTTATATCGATCCAGCTAAACTTTTACCTCTCGCTAGATTCCTCCCACAACCAAAGTACGTAATTGCTCTCCCCACTTTCCCCCTCCTCACATGGAGTCTTGAATTAGAGTTGGTTCATTAACATGCTTCTTAGTCTCTTTGATCAAGTGATTGCTTATGTCCGTTTGTATTTAGTGGTTTTATTATTGCATTCATGGTGCCACAATAAAAAAAATGAGCTTTCATGGTTCCACTTACGCGCAGTTTTATGTTTTGCGGCACAACTTATGTTTATTGATCACTTGTACTATTGTACGTCCTTTATTAGCTTTTCACCTTTCCTCTCTATTAGCATCTTTAGTTCAGGAGTAATGTTTTGATAGATTTCCAGGTTTGAATGTCTGATCTTTTCCTTCTTATTGAAATTGAATGGAATCTTGAATGGAGGTGGGGTGGTAAGTAAAAGATTCTATTGAAGCTGAAACTTTGGCCTCCAAATTGAGTAAAAGCATGGGAAACTAAGAATAGTGTTGCTATCCTGAATAGGCTTCATATTCATTTCCAGTCTGTTTTAACATTTTTTTTTGTGTGTTTCATAGTACTTGGATCCTTTATATGGTTCCAATTTTTCAATATCCGAGCTAACCATGTTGCTTCATATTCTGAGGTCCGATGTGGCTATGATAAAAATTTCACAAACCGACCGTTTGTGCTTGTTTTTATTCCTTAGCTAAGTTGATATTAGTCTTCAGTGGCCTATTGTCTACTTGAGACACACGACTTAGTTTACTGAAAACGTTTTGCCTCTCTGAATGGCCTTATGCATTGCTTTCCCTTTCTATTCAGTATCTGAATATTAGTTGTTGGTTGATTCATGCGATTTGTTCTCACCCCTTGAATGTTTTAGAACTGCTTTTCCAATTGACAGAATCAAAGAACTATTGAGTAATGCTACACAATGTTTGCGTTAGCTTTTGTATAAAAATAATTTTGATGTCTGATCTTTATTTCAGGGGACAGTCTGCCACTAGAGGAGGTCGTGGTGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAGATTAGCATTATGTAATATCATAGTTTTTTCAATTTTCCATTTGCAATGTCGTTCTGAGAAGCGTTTACAAGAGTCTTTTTTTTGTACTGTATTTTGTTTGGAATTGAACTTCTCGGTATTGAAGCTACTACTTAATTTAATTGTGAAATTTTAATTTCTTACTAACAACTACAACTGAAACTTTGCGAATCTGATCCTGAATTTAATATAGGGATTGAGTTCATCATCCA

mRNA sequence

ATGCGACCTCCAAGAGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGAGGAGGAGGCGGCCGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGAGGCGGCGGCGGGTTCCGTGATGAGGGTCCTCCGTCTGAAGTAGTTGAGGTTTCGACTTTTCTTCACGCATGTGAGGGAGACGCAGTCACAAGGCTCACGAATGAGAAGATTCCTTTCTTCAATGCCCCAATCTATCTTCAGAATAAGACCCAGATAGGCAAAGTTGATGAAATTTTCGGCCCCATTAATGAATCTTATTTCTCGATCAAAATGATGGAAGGAATTGTCGCCACCTCATATTCTTCTGGGGATAAATTTTATATCGATCCAGCTAAACTTTTACCTCTCGCTAGATTCCTCCCACAACCAAAGGGACAGTCTGCCACTAGAGGAGGTCGTGGTGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAG

Coding sequence (CDS)

ATGCGACCTCCAAGAGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGAGGAGGAGGCGGCCGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGAGGCGGCGGCGGGTTCCGTGATGAGGGTCCTCCGTCTGAAGTAGTTGAGGTTTCGACTTTTCTTCACGCATGTGAGGGAGACGCAGTCACAAGGCTCACGAATGAGAAGATTCCTTTCTTCAATGCCCCAATCTATCTTCAGAATAAGACCCAGATAGGCAAAGTTGATGAAATTTTCGGCCCCATTAATGAATCTTATTTCTCGATCAAAATGATGGAAGGAATTGTCGCCACCTCATATTCTTCTGGGGATAAATTTTATATCGATCCAGCTAAACTTTTACCTCTCGCTAGATTCCTCCCACAACCAAAGGGACAGTCTGCCACTAGAGGAGGTCGTGGTGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAG

Protein sequence

MRPPRGGGGFRGGRDGGFGGRGGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDKFYIDPAKLLPLARFLPQPKGQSATRGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRF

Homology

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BLAST of Spg012347 vs. NCBI nr
Match: XP_023544656.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023544657.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.7 bits (831), Expect = 5.4e-85
Identity = 187/195 (95.90%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHAC 60
           MRPPRGGGGFRGGRDGGFGGR GGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVS+FLHAC
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGR-GGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHAC 60

Query: 61  EGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD
Sbjct: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120

Query: 121 KFYIDPAKLLPLARFLPQPKGQSATR-GGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180
           KFYIDPAKLLPLARFLPQPKGQ A R GGRGGGRGGGRGGRG GGFRGRGGPRGGRGGPP
Sbjct: 121 KFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGAGGFRGRGGPRGGRGGPP 180

Query: 181 RGGGRGGGFRGRGRF 195
           RGGGRGGGFRGRGR+
Sbjct: 181 RGGGRGGGFRGRGRY 194

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BLAST of Spg012347 vs. NCBI nr
Match: XP_022978292.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima])

HSP 1 Score: 323.2 bits (827), Expect = 1.6e-84
Identity = 185/195 (94.87%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHAC 60
           MRPPRGGGGFRGGRDGGFGGR GGGRGRGGGRFGGRGGGGFRDEGPP+EVVE+S+FLHAC
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGR-GGGRGRGGGRFGGRGGGGFRDEGPPAEVVEISSFLHAC 60

Query: 61  EGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD
Sbjct: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120

Query: 121 KFYIDPAKLLPLARFLPQPKGQSATR-GGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180
           KFYIDPAKLLPLARFLPQPKGQ A R GGRGGGRGGGRGGRG GGFRGRGGPRGGRGGPP
Sbjct: 121 KFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGAGGFRGRGGPRGGRGGPP 180

Query: 181 RGGGRGGGFRGRGRF 195
           RGGGRGGGFRGRGR+
Sbjct: 181 RGGGRGGGFRGRGRY 194

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BLAST of Spg012347 vs. NCBI nr
Match: XP_022925015.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata] >XP_022966461.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima] >XP_023518192.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.8 bits (826), Expect = 2.1e-84
Identity = 188/198 (94.95%), Postives = 190/198 (95.96%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRG---RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGG  G   RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQSATR-GGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180
           SGDKFYIDPAKLLPLARFLPQPKGQ A R GGRGGGRGGGRGGRGGGGFRGRGGPRGGRG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFRGRGRF 195
           GPPRGGGRGGGFRGRGRF
Sbjct: 181 GPPRGGGRGGGFRGRGRF 198

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BLAST of Spg012347 vs. NCBI nr
Match: XP_022156221.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Momordica charantia])

HSP 1 Score: 320.5 bits (820), Expect = 1.0e-83
Identity = 189/198 (95.45%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGG--GGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLH 60
           MRPPRGGGGFRGGRDGGFGGRGG  GG GRGGGRFGGRGGGGFRDEGPP+EVVEVSTFLH
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH 60

Query: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSS 120
           ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+S
Sbjct: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPKGQSATR-GGRGGGRGGGRGGR-GGGGFRGRGGPRGGRG 180
           GDKFYIDPAKLLPLARFLPQPKGQSA R GGRGGGRGG RGGR GGGGFRGRGGPRGGRG
Sbjct: 121 GDKFYIDPAKLLPLARFLPQPKGQSAARGGGRGGGRGGFRGGRGGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFRGRGRF 195
           GPPRGGGRGGGFRGRGRF
Sbjct: 181 GPPRGGGRGGGFRGRGRF 198

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BLAST of Spg012347 vs. NCBI nr
Match: KAG6595505.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 187/198 (94.44%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRG---RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGG  G   RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQSATR-GGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180
           SGDKFYIDPAKLLPLARFLPQPKGQ A R GGRGGGRGGGRGGRGGGGFRGRGGPRGGRG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFRGRGRF 195
           GP RGGGRGGGFRGRGRF
Sbjct: 181 GPARGGGRGGGFRGRGRF 198

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BLAST of Spg012347 vs. ExPASy Swiss-Prot
Match: Q8VZT0 (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.7e-62
Identity = 164/204 (80.39%), Postives = 170/204 (83.33%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGFGGRGGGGRGR---GGGRFGGRGG--GGFRDEGPPSEVVE 60
           MRPP RGGGGF  RGGRDGG GGR GGG GR   GGGRFGG GG  GGFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVT+L+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYSSGDKFYIDPAKLLPLARFLPQPKGQS-ATRGGRGGGRGGGRG-GRGGGGFRGRGG 180
           ATSYS GDKF+IDP KLLPLARFLPQPKGQS   RGG G GRG  RG GRGG   RGRG 
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRGRGA 180

Query: 181 PRGGRGGPPRGGGRGGGFRGRGRF 195
           PRGGR  PPRGG R G FRGRGRF
Sbjct: 181 PRGGR-FPPRGGSR-GSFRGRGRF 202

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BLAST of Spg012347 vs. ExPASy Swiss-Prot
Match: Q9FK53 (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.7e-53
Identity = 148/197 (75.13%), Postives = 154/197 (78.17%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHAC 60
           MRPPRGGG FRG      GGR  GGRGRG GR  GR GGG  DEGPPSEVVEV+TFLHAC
Sbjct: 1   MRPPRGGGSFRGR-----GGRDNGGRGRGRGRGRGRFGGGNYDEGPPSEVVEVATFLHAC 60

Query: 61  EGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAV +L+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSYS GD
Sbjct: 61  EGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGD 120

Query: 121 KFYIDPAKLLPLARFLPQPKGQSATRGGRGGGRGGGRG---GRGGGGFRGRGGPRG-GRG 180
           KF+I P KLLPL+RFLPQPKGQS   GGRG GR   RG    RG G FRGRG PRG  RG
Sbjct: 121 KFFISPEKLLPLSRFLPQPKGQS---GGRGEGRVPPRGRGPPRGRGNFRGRGAPRGASRG 180

Query: 181 GPPRGGGRGGGFRGRGR 194
             PRGG R GGFRGRGR
Sbjct: 181 FQPRGGPR-GGFRGRGR 188

[Close]

BLAST of Spg012347 vs. ExPASy Swiss-Prot
Match: Q2HH48 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.7e-39
Identity = 122/206 (59.22%), Postives = 135/206 (65.53%), Query Frame = 0


Query: 21  RGGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTRLTNEKIPFFNAPI 80
           RG GG G GGGR GGRGG   RD GPP+ V+E+  F+HACEG+ V   TN K+P FNAPI
Sbjct: 8   RGRGGGGFGGGRGGGRGGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPI 67

Query: 81  YLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDKFYIDPAKLLPLARFLPQPK 140
           YL+NKT +GKVDE+ GPIN+ YF+IK  EGI ATS+  GDKFYI   KLLPL RFLP+PK
Sbjct: 68  YLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLPKPK 127

Query: 141 GQSAT----------------RGG------RGGGRGGGRGG----RGGGGF-----RGRG 195
               T                RGG      RGGGRGGGRGG    RGGGGF      GRG
Sbjct: 128 PPPGTVSKVKKPSRGGAARGGRGGPGGGFSRGGGRGGGRGGFGGSRGGGGFGGGFGGGRG 187

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BLAST of Spg012347 vs. ExPASy Swiss-Prot
Match: Q5RJV1 (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=gar1 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.7e-37
Identity = 126/204 (61.76%), Postives = 143/204 (70.10%), Query Frame = 0


Query: 5   RGGGGFRGGRDGGFGGRGG--GGRGRGGGRFG-GRGGG------GFRDEGPPSEVVEVST 64
           RGGGG RGG  GGFGGRGG  GG G+GGGR G GRGGG      G  D+GPP  VVEV  
Sbjct: 11  RGGGGGRGG--GGFGGRGGGRGGYGQGGGRGGFGRGGGRGGFNRGGYDQGPPESVVEVGE 70

Query: 65  FLHACEGDAVTR-LTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA 124
           F+H CE D V + +T E ++P+FNAPIYL+NK QIGKVDEIFG + + YFSIK+ E + A
Sbjct: 71  FMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKA 130

Query: 125 TSYSSGDKFYIDPAKLLPLARFLPQPKGQSA--TRGGRGGGRGGGRGGRGGGGFRGRGGP 184
           +S+    KFYIDPAKLLPL RFLP+P G+      GGRGGGRGGGRG  GG G  G GG 
Sbjct: 131 SSFKKLQKFYIDPAKLLPLQRFLPRPPGEKGPPRGGGRGGGRGGGRGRGGGRG--GGGGF 190

Query: 185 RGGRGGPPRGGG-----RGGGFRG 191
           RGGRGG   GGG     RGGGFRG
Sbjct: 191 RGGRGGGFGGGGGFRGSRGGGFRG 210

[Close]

BLAST of Spg012347 vs. ExPASy Swiss-Prot
Match: Q6FSB0 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.3e-36
Identity = 119/207 (57.49%), Postives = 135/207 (65.22%), Query Frame = 0


Query: 8   GGFRGGRDGGFGGRGGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHACEGDAVTR 67
           GGFRGGR        GG RG  GGR G RGG   + +GPP  V+E+  F+H CEGD V R
Sbjct: 5   GGFRGGR--------GGSRGGFGGRGGARGGRPIQ-QGPPDTVLEMGEFMHPCEGDVVCR 64

Query: 68  LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDKFYIDPA 127
             N K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF+IK  EG+ ATS+  GDKFYI P 
Sbjct: 65  SINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCGEGVQATSFKEGDKFYIAPD 124

Query: 128 KLLPLARFLPQPK--------------GQSATRGG-RG--GGRGGGRGGRGG-----GGF 187
           KLLP+ RF+P+PK              G  A RGG RG  GGRGG RGG GG     GGF
Sbjct: 125 KLLPIERFIPKPKVAGPPKPKNKKKRSGAPAGRGGARGGFGGRGGSRGGFGGRGGSRGGF 184

Query: 188 RGRGGPRGGRGGPPRGGGRGGGFRGRG 193
            GRGG RGG GG  RGG R GGF GRG
Sbjct: 185 GGRGGSRGGFGG--RGGSR-GGFGGRG 199

[Close]

BLAST of Spg012347 vs. ExPASy TrEMBL
Match: A0A6J1IKQ7 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111478321 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.6e-85
Identity = 185/195 (94.87%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHAC 60
           MRPPRGGGGFRGGRDGGFGGR GGGRGRGGGRFGGRGGGGFRDEGPP+EVVE+S+FLHAC
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGR-GGGRGRGGGRFGGRGGGGFRDEGPPAEVVEISSFLHAC 60

Query: 61  EGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD
Sbjct: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120

Query: 121 KFYIDPAKLLPLARFLPQPKGQSATR-GGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPP 180
           KFYIDPAKLLPLARFLPQPKGQ A R GGRGGGRGGGRGGRG GGFRGRGGPRGGRGGPP
Sbjct: 121 KFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGAGGFRGRGGPRGGRGGPP 180

Query: 181 RGGGRGGGFRGRGRF 195
           RGGGRGGGFRGRGR+
Sbjct: 181 RGGGRGGGFRGRGRY 194

[Close]

BLAST of Spg012347 vs. ExPASy TrEMBL
Match: A0A6J1HPE3 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466108 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.9e-85
Identity = 188/198 (94.95%), Postives = 190/198 (95.96%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRG---RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGG  G   RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQSATR-GGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180
           SGDKFYIDPAKLLPLARFLPQPKGQ A R GGRGGGRGGGRGGRGGGGFRGRGGPRGGRG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFRGRGRF 195
           GPPRGGGRGGGFRGRGRF
Sbjct: 181 GPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of Spg012347 vs. ExPASy TrEMBL
Match: A0A6J1EGP8 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111432388 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.9e-85
Identity = 188/198 (94.95%), Postives = 190/198 (95.96%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRG---RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60
           MRPPRGGGGFRGGRDGGFGGRGGG  G   RGGGRFGGRGGGGFRDEGPPSEVVEVSTFL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120
           HACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQSATR-GGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180
           SGDKFYIDPAKLLPLARFLPQPKGQ A R GGRGGGRGGGRGGRGGGGFRGRGGPRGGRG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFRGRGRF 195
           GPPRGGGRGGGFRGRGRF
Sbjct: 181 GPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of Spg012347 vs. ExPASy TrEMBL
Match: A0A6J1DU94 (H/ACA ribonucleoprotein complex subunit OS=Momordica charantia OX=3673 GN=LOC111023158 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.9e-84
Identity = 189/198 (95.45%), Postives = 191/198 (96.46%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGG--GGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLH 60
           MRPPRGGGGFRGGRDGGFGGRGG  GG GRGGGRFGGRGGGGFRDEGPP+EVVEVSTFLH
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH 60

Query: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSS 120
           ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+S
Sbjct: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPKGQSATR-GGRGGGRGGGRGGR-GGGGFRGRGGPRGGRG 180
           GDKFYIDPAKLLPLARFLPQPKGQSA R GGRGGGRGG RGGR GGGGFRGRGGPRGGRG
Sbjct: 121 GDKFYIDPAKLLPLARFLPQPKGQSAARGGGRGGGRGGFRGGRGGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFRGRGRF 195
           GPPRGGGRGGGFRGRGRF
Sbjct: 181 GPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of Spg012347 vs. ExPASy TrEMBL
Match: A0A6J1GF54 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111453623 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 184/194 (94.85%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHAC 60
           MRPPRGGGGFRGGRDGGFGGR GGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVS+FLHAC
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGR-GGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHAC 60

Query: 61  EGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD
Sbjct: 61  EGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120

Query: 121 KFYIDPAKLLPLARFLPQPKGQSATRGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPR 180
           KFYIDPAKLLPLARFLPQPKGQ A    RGGGRGGGRGGRG GGFRGRGGPRGGRGGPPR
Sbjct: 121 KFYIDPAKLLPLARFLPQPKGQFA---ARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR 180

Query: 181 GGGRGGGFRGRGRF 195
           GGGRGGGFRGRGR+
Sbjct: 181 GGGRGGGFRGRGRY 190

[Close]

BLAST of Spg012347 vs. TAIR 10
Match: AT3G03920.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 238.4 bits (607), Expect = 4.7e-63
Identity = 164/204 (80.39%), Postives = 170/204 (83.33%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGFGGRGGGGRGR---GGGRFGGRGG--GGFRDEGPPSEVVE 60
           MRPP RGGGGF  RGGRDGG GGR GGG GR   GGGRFGG GG  GGFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSTFLHACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V+TF+HACEGDAVT+L+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYSSGDKFYIDPAKLLPLARFLPQPKGQS-ATRGGRGGGRGGGRG-GRGGGGFRGRGG 180
           ATSYS GDKF+IDP KLLPLARFLPQPKGQS   RGG G GRG  RG GRGG   RGRG 
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRGRGA 180

Query: 181 PRGGRGGPPRGGGRGGGFRGRGRF 195
           PRGGR  PPRGG R G FRGRGRF
Sbjct: 181 PRGGR-FPPRGGSR-GSFRGRGRF 202

[Close]

BLAST of Spg012347 vs. TAIR 10
Match: AT5G18180.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 208.8 bits (530), Expect = 4.0e-54
Identity = 148/197 (75.13%), Postives = 154/197 (78.17%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSTFLHAC 60
           MRPPRGGG FRG      GGR  GGRGRG GR  GR GGG  DEGPPSEVVEV+TFLHAC
Sbjct: 1   MRPPRGGGSFRGR-----GGRDNGGRGRGRGRGRGRFGGGNYDEGPPSEVVEVATFLHAC 60

Query: 61  EGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGD 120
           EGDAV +L+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSYS GD
Sbjct: 61  EGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGD 120

Query: 121 KFYIDPAKLLPLARFLPQPKGQSATRGGRGGGRGGGRG---GRGGGGFRGRGGPRG-GRG 180
           KF+I P KLLPL+RFLPQPKGQS   GGRG GR   RG    RG G FRGRG PRG  RG
Sbjct: 121 KFFISPEKLLPLSRFLPQPKGQS---GGRGEGRVPPRGRGPPRGRGNFRGRGAPRGASRG 180

Query: 181 GPPRGGGRGGGFRGRGR 194
             PRGG R GGFRGRGR
Sbjct: 181 FQPRGGPR-GGFRGRGR 188

The following BLAST results are available for this feature:

BLAST of Spg012347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544656.1	5.4e-85	95.90	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pep...	[more]
XP_022978292.1	1.6e-84	94.87	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita max...	[more]
XP_022925015.1	2.1e-84	94.95	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]
XP_022156221.1	1.0e-83	95.45	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Momordica cha...	[more]
KAG6595505.1	1.7e-83	94.44	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]

BLAST of Spg012347 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT0	6.7e-62	80.39	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
Q9FK53	5.7e-53	75.13	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
Q2HH48	2.7e-39	59.22	H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC...	[more]
Q5RJV1	9.7e-37	61.76	H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=gar1 ...	[more]
Q6FSB0	6.3e-36	57.49	H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 20...	[more]

BLAST of Spg012347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IKQ7	7.6e-85	94.87	H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111478...	[more]
A0A6J1HPE3	9.9e-85	94.95	H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A6J1EGP8	9.9e-85	94.95	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1DU94	4.9e-84	95.45	H/ACA ribonucleoprotein complex subunit OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1GF54	2.4e-83	94.85	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Spg012347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03920.1	4.7e-63	80.39	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	4.0e-54	75.13	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 41..140 e-value: 6.1E-35 score: 120.3
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230	Probable tRNA pseudouridine synthase domain	coord: 46..137 e-value: 1.0E-41 score: 142.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..194
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..193
None	No IPR available	PANTHER	PTHR23237:SF12	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT	coord: 1..193
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 51..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012347.1	Spg012347.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0000454	snoRNA guided rRNA pseudouridine synthesis
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0051787	misfolded protein binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:1990381	ubiquitin-specific protease binding