Spg012340 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg012340
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold1: 20921640 .. 20921885 (+)
RNA-Seq ExpressionSpg012340
SyntenySpg012340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGGCTTCAATACAATTTCTTCCCCACTGATCTCCTTTACCCTAAATCATCTTCTTCTTCTTCTTCTTCATCAGAAGCCATGAATAGGGCAAGTGTCACCTTCAAAACTCATCTAAGAGGCAATAAAGCTGAGGAAGATGATCATGTGGAAGATCCCAAAAGCAGCTTGATCATTCAAAGGGCTCATAGATCACCATTGATTCTCAAGCATCAAATGATCAAGAAATCTTCAACCCTCTAA

mRNA sequence

ATGGCTGGGCTTCAATACAATTTCTTCCCCACTGATCTCCTTTACCCTAAATCATCTTCTTCTTCTTCTTCTTCATCAGAAGCCATGAATAGGGCAAGTGTCACCTTCAAAACTCATCTAAGAGGCAATAAAGCTGAGGAAGATGATCATGTGGAAGATCCCAAAAGCAGCTTGATCATTCAAAGGGCTCATAGATCACCATTGATTCTCAAGCATCAAATGATCAAGAAATCTTCAACCCTCTAA

Coding sequence (CDS)

ATGGCTGGGCTTCAATACAATTTCTTCCCCACTGATCTCCTTTACCCTAAATCATCTTCTTCTTCTTCTTCTTCATCAGAAGCCATGAATAGGGCAAGTGTCACCTTCAAAACTCATCTAAGAGGCAATAAAGCTGAGGAAGATGATCATGTGGAAGATCCCAAAAGCAGCTTGATCATTCAAAGGGCTCATAGATCACCATTGATTCTCAAGCATCAAATGATCAAGAAATCTTCAACCCTCTAA

Protein sequence

MAGLQYNFFPTDLLYPKSSSSSSSSSEAMNRASVTFKTHLRGNKAEEDDHVEDPKSSLIIQRAHRSPLILKHQMIKKSSTL
Homology
BLAST of Spg012340 vs. NCBI nr
Match: KAG6603410.1 (hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 6.3e-19
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPK------SSSSSSSSSEAMNRASVTFKTHLRGNKAEEDDHVEDP 60
          MAGLQYNFFPTDLLYPK      SSSSSSSSS+A+NRASVTFK  +RGN+ EEDDH +  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGA 60

Query: 61 KSSLIIQRAHRSPLILKHQMIKKSSTL 82
          K SL IQ+  RSPLILKHQ+   SSTL
Sbjct: 61 K-SLSIQKGDRSPLILKHQVKNDSSTL 86

BLAST of Spg012340 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical protein E6C27_scaffold827G00560 [Cucumis melo var. makuwa] >TYK28218.1 hypothetical protein E5676_scaffold258G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 8.2e-19
Identity = 62/82 (75.61%), Postives = 66/82 (80.49%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKSSSSSSSSSEAMNRASVTFKTHLRGNKAEED-DHVEDPKSSLI 60
          MAGLQYNFFPTDLLYPK  SSSSSSSEA+NRASVTFKT LRGNK EED DH ++ KS L 
Sbjct: 1  MAGLQYNFFPTDLLYPK-PSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLF 60

Query: 61 IQR-AHRSPLILKHQMIKKSST 81
           Q+ A RSPLILKHQ    SST
Sbjct: 61 SQKVADRSPLILKHQSKSTSST 81

BLAST of Spg012340 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_018873 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKSSSSSSSSSEAMNRASVTFKTHLRGNKAEED--DHVEDPKSSL 60
          MAGLQYNFFPTDLLYPK  SSSSSSSEA+NRASVTFKT LRGNK +++  DH ++PKS L
Sbjct: 1  MAGLQYNFFPTDLLYPK-PSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRL 60

Query: 61 II-QRAHRSPLILKHQMIKKSST 81
          +I Q+  RSPLILKHQ+   SS+
Sbjct: 61 MISQKVDRSPLILKHQIKSTSSS 82

BLAST of Spg012340 vs. ExPASy TrEMBL
Match: A0A5A7V9D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00320 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.0e-19
Identity = 62/82 (75.61%), Postives = 66/82 (80.49%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKSSSSSSSSSEAMNRASVTFKTHLRGNKAEED-DHVEDPKSSLI 60
          MAGLQYNFFPTDLLYPK  SSSSSSSEA+NRASVTFKT LRGNK EED DH ++ KS L 
Sbjct: 1  MAGLQYNFFPTDLLYPK-PSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLF 60

Query: 61 IQR-AHRSPLILKHQMIKKSST 81
           Q+ A RSPLILKHQ    SST
Sbjct: 61 SQKVADRSPLILKHQSKSTSST 81

BLAST of Spg012340 vs. ExPASy TrEMBL
Match: E5GC02 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.0e-19
Identity = 62/82 (75.61%), Postives = 66/82 (80.49%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKSSSSSSSSSEAMNRASVTFKTHLRGNKAEED-DHVEDPKSSLI 60
          MAGLQYNFFPTDLLYPK  SSSSSSSEA+NRASVTFKT LRGNK EED DH ++ KS L 
Sbjct: 1  MAGLQYNFFPTDLLYPK-PSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLF 60

Query: 61 IQR-AHRSPLILKHQMIKKSST 81
           Q+ A RSPLILKHQ    SST
Sbjct: 61 SQKVADRSPLILKHQSKSTSST 81

BLAST of Spg012340 vs. ExPASy TrEMBL
Match: A0A0A0KWJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.2e-19
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKSSSSSSSSSEAMNRASVTFKTHLRGNKAEED--DHVEDPKSSL 60
          MAGLQYNFFPTDLLYPK  SSSSSSSEA+NRASVTFKT LRGNK +++  DH ++PKS L
Sbjct: 1  MAGLQYNFFPTDLLYPK-PSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRL 60

Query: 61 II-QRAHRSPLILKHQMIKKSST 81
          +I Q+  RSPLILKHQ+   SS+
Sbjct: 61 MISQKVDRSPLILKHQIKSTSSS 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6603410.16.3e-1970.11hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sorori... [more]
ADN34001.18.2e-1975.61hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical prote... [more]
KGN53975.11.1e-1871.08hypothetical protein Csa_018873 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V9D34.0e-1975.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GC024.0e-1975.61Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A0A0KWJ25.2e-1971.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg012340.1Spg012340.1mRNA