Spg012049 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012049
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold1: 1032473 .. 1032990 (+)
RNA-Seq Expression	Spg012049
Synteny	Spg012049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATGATTCCGATCAAGGTAGTGGCGGCGATGGCCGCGTTCTTGCCATTGATCGTGGCGATCGCGGCGGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCGGCGGGAGACAAATCGTCGCCGGAGATGCGATCGTTCTTCGGAGGAACGTCGTCGCCGACACCGGAAGTGGCATTGCCGTTGCCGAAGGTGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAACAAACGACTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATAACAGGTGTCACTTTATTAGTGGGTTCTACGTTATTCTACATTTATAAGGTCAAAAATGAAAGATCATTGCCGTTATCTTCAAATAATAATCACAAATAAAGATAAGAATCCAAAATATCAACAACAATTATGATACCTTTACACCATGAATTTAGCTGTCTTAGCCGTGCATTATACTGTTACTGTTATAGCTGTTGAAATAG

mRNA sequence

ATGACGATGATTCCGATCAAGGTAGTGGCGGCGATGGCCGCGTTCTTGCCATTGATCGTGGCGATCGCGGCGGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCGGCGGGAGACAAATCGTCGCCGGAGATGCGATCGTTCTTCGGAGGAACGTCGTCGCCGACACCGGAAGTGGCATTGCCGTTGCCGAAGGTGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAACAAACGACTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATAACAGGTGTCACTTTATTAGTGGGTTCTACGTTATTCTACATTTATAAGCTGTTGAAATAG

Coding sequence (CDS)

ATGACGATGATTCCGATCAAGGTAGTGGCGGCGATGGCCGCGTTCTTGCCATTGATCGTGGCGATCGCGGCGGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCGGCGGGAGACAAATCGTCGCCGGAGATGCGATCGTTCTTCGGAGGAACGTCGTCGCCGACACCGGAAGTGGCATTGCCGTTGCCGAAGGTGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAACAAACGACTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATAACAGGTGTCACTTTATTAGTGGGTTCTACGTTATTCTACATTTATAAGCTGTTGAAATAG

Protein sequence

MTMIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPTPEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYKLLK

Homology

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BLAST of Spg012049 vs. NCBI nr
Match: KAG6581475.1 (hypothetical protein SDJN03_21477, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034767.1 hypothetical protein SDJN02_04498, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 7.3e-51
Identity = 106/119 (89.08%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPT 62
           +IPIK VAAMA FLPLIVA+A+ALEIRPSEHGLEFQSPPPAG+KSSPEMRSFF GTSSP 
Sbjct: 2   IIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61

Query: 63  PEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYK 122
           P+  LPLPK MNSSEAPGWWTHRDGGNKR+RNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120

[Close]

BLAST of Spg012049 vs. NCBI nr
Match: XP_022925668.1 (uncharacterized protein LOC111433017 [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 2.1e-50
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPT 62
           +IPIK VAAM  FLPLIVA+A+ALEIRPSEHGLEFQSPPPAG+KSSPEMRSFF GTSSP 
Sbjct: 58  IIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 117

Query: 63  PEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYKL 122
           P+  LPLPK MNSSEAPGWWTHRDGGNKR+RNALLVATAACGITGVTLLVGSTLFYIYK+
Sbjct: 118 PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKV 177

[Close]

BLAST of Spg012049 vs. NCBI nr
Match: XP_023518243.1 (uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 4.7e-50
Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPT 62
           MI IK +AAMA +L  IVAIAAALEIRPSEHGLEFQSPP AGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 63  PEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYKL 122
           PEVALPLPK MNSSEAPGWWTHRDGG+KRLRNALLVATAACGITGVTLLVGSTL+YI+K+
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

[Close]

BLAST of Spg012049 vs. NCBI nr
Match: XP_023003567.1 (uncharacterized protein LOC111497130 [Cucurbita maxima])

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-49
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPT 62
           MI IK +AAMA +L  IVAI AALEIRPSEHGLEFQSPP AGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 63  PEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYKL 122
           PEVALPLPK MNSSEAPGWWTHRDGG+KRLRNALLVATAACG+TGVTLLVGSTL+YI+K+
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFKV 120

[Close]

BLAST of Spg012049 vs. NCBI nr
Match: XP_022926736.1 (uncharacterized protein LOC111433768 [Cucurbita moschata])

HSP 1 Score: 204.1 bits (518), Expect = 6.8e-49
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPT 62
           MI IK +AAMA +L  IVAIAAALEIRPSEHGLEFQS P AGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60

Query: 63  PEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYKL 122
           PEVALPLPK MNSSEAPGWWTHRDGG+KRLRNALLVATAACGITGVTLLVGSTL+YI+K+
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

[Close]

BLAST of Spg012049 vs. ExPASy TrEMBL
Match: A0A6J1EFW4 (uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC111433017 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPT 62
           +IPIK VAAM  FLPLIVA+A+ALEIRPSEHGLEFQSPPPAG+KSSPEMRSFF GTSSP 
Sbjct: 58  IIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 117

Query: 63  PEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYKL 122
           P+  LPLPK MNSSEAPGWWTHRDGGNKR+RNALLVATAACGITGVTLLVGSTLFYIYK+
Sbjct: 118 PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKV 177

[Close]

BLAST of Spg012049 vs. ExPASy TrEMBL
Match: A0A6J1KMY3 (uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.9e-49
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPT 62
           MI IK +AAMA +L  IVAI AALEIRPSEHGLEFQSPP AGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 63  PEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYKL 122
           PEVALPLPK MNSSEAPGWWTHRDGG+KRLRNALLVATAACG+TGVTLLVGSTL+YI+K+
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFKV 120

[Close]

BLAST of Spg012049 vs. ExPASy TrEMBL
Match: A0A6J1EFQ9 (uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC111433768 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.3e-49
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPT 62
           MI IK +AAMA +L  IVAIAAALEIRPSEHGLEFQS P AGDKSSPEMRSFFGGTSSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60

Query: 63  PEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYKL 122
           PEVALPLPK MNSSEAPGWWTHRDGG+KRLRNALLVATAACGITGVTLLVGSTL+YI+K+
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

[Close]

BLAST of Spg012049 vs. ExPASy TrEMBL
Match: A0A0A0KM65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47
Identity = 99/119 (83.19%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSSPT 62
           MIPIK  AA+ AF  LI +IAA  EIRPSEHGLEFQSPPP GDKSSPEMRSFFGG +SPT
Sbjct: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPVGDKSSPEMRSFFGGIASPT 60

Query: 63  PEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIYK 122
           PEVALP+PK +NSSE+PGWW H DGGNKRLRNALLVATAACGITGVTLLVGSTLFYI+K
Sbjct: 61  PEVALPIPKTLNSSESPGWWNHHDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIFK 119

[Close]

BLAST of Spg012049 vs. ExPASy TrEMBL
Match: A0A6J1CZN3 (uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015729 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.4e-46
Identity = 102/124 (82.26%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 3   MIPIKVVAAMAAFLPLIVAIAA----ALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGT 62
           MIPIK+ AAMA  LPLIVA+ A    ALEIRPSEHGLEFQSPPPAGDKSSPEM SFFGG 
Sbjct: 1   MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGR 60

Query: 63  SSPTPEVALPLPKVMNSSEAPGWWTHRDGGNKRLRNALLVATAACGITGVTLLVGSTLFY 122
           SSPTP+ ALPLPK MNSSEAPGWWT RDGG+ RLRNALLVATAA GITGVTLLVGS LFY
Sbjct: 61  SSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLVATAAFGITGVTLLVGSVLFY 120

[Close]

BLAST of Spg012049 vs. TAIR 10
Match: AT4G21740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 9.2e-12
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 15  FLPLIVAIAAALEIRPSEHGLEFQ-SPPPAGDKSSP-EMRSFFGG--TSSPTPEVALPLP 74
           FL +    + A E+RPS+HGL++Q S PP    S P +M+SFFG   +SSP P     LP
Sbjct: 22  FLVIFTGNSLAGELRPSDHGLQYQFSSPPTESHSPPGKMKSFFGDSHSSSPPPSHPQLLP 81

Query: 75  K--VMNSSEAPGWWTHRDGGNKR----LRNALLVATAACGITGVTLLVGSTLFYIYKLLK 125
           K    +  +   WW  RDG   R    +R+  L A+  CG++GV LLV  TL Y ++  K
Sbjct: 82  KATAADGGDDDSWW--RDGAGIRRDHVMRHVFLAASIICGVSGVALLVVFTLIYFFRYRK 139

[Close]

BLAST of Spg012049 vs. TAIR 10
Match: AT1G30515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 4.0e-07
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 22  IAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGTSS-PTPEVALPLPKVMNSS-EAP 81
           I  A E+RPS+HGLE+   P      S EM SFFG  SS     ++ P   ++ S+ ++P
Sbjct: 27  IINARELRPSDHGLEYYYEP----GESSEMTSFFGPPSSNDLTSISSPSSSILPSAVKSP 86

Query: 82  GWWTHRDGGNKRLRN-ALLVATAACGITGVTLLVGSTLFY 119
                +D  + R+ N  L+V +  CG++GV L+V S L Y
Sbjct: 87  MKTLSKDQDDDRVMNHVLVVGSLVCGLSGVALMVASALIY 122

The following BLAST results are available for this feature:

BLAST of Spg012049 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581475.1	7.3e-51	89.08	hypothetical protein SDJN03_21477, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022925668.1	2.1e-50	87.50	uncharacterized protein LOC111433017 [Cucurbita moschata]	[more]
XP_023518243.1	4.7e-50	89.17	uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo]	[more]
XP_023003567.1	4.0e-49	87.50	uncharacterized protein LOC111497130 [Cucurbita maxima]	[more]
XP_022926736.1	6.8e-49	88.33	uncharacterized protein LOC111433768 [Cucurbita moschata]	[more]

BLAST of Spg012049 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg012049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFW4	1.0e-50	87.50	uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC1114330...	[more]
A0A6J1KMY3	1.9e-49	87.50	uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130...	[more]
A0A6J1EFQ9	3.3e-49	88.33	uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC1114337...	[more]
A0A0A0KM65	2.4e-47	83.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1	[more]
A0A6J1CZN3	3.4e-46	82.26	uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Spg012049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21740.1	9.2e-12	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G30515.1	4.0e-07	37.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..60
None	No IPR available	PANTHER	PTHR37189	CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 5..122
None	No IPR available	PANTHER	PTHR37189:SF4	CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 5..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012049.1	Spg012049.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane