Spg012020 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg012020
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-binding protein DDB_G0278111
Location	scaffold1: 1910896 .. 1913102 (-)
RNA-Seq Expression	Spg012020
Synteny	Spg012020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTTGCCAAGCTCGCGTCAATGCCAGGTTTGGTAGCACTAAAGAGATGGGTTCTGGAGAGAATCAGTGGTGGACTACTGGTAATCATCCTTAAGAGGAGAAAACCCTAACAATCTTTGGAATGCTGACCTTCTAGAGCTTGGTATTGGAGAGTGGGAGGAAGTGGGTGTTAACAACTTAACCTACATAAATGATGCAAAAACTGGTCCTCACAAAAACACTCTCAAAAGGTCATGAGACCGACAAAAACTATCCCGTGTCCTTAGAACAAGTTGTAAGGGTACTAGTATGGTATATAGGGGGAATAGTAATGGAAGAGGAGTAAGGGATAGTGGTAATTAGATAGGAGTGCTTTGATTATAAATAGGGGAGCTAGGGTCTTAGAATGGTGTGAAGTATTTTGGTAGTGTCTCATTGTGGGACTTGGGAGAGAGATAGCCCTCTCGAAAGGCTATTGGTATATTGTAATTTTCTTTTGATATTGCAATATATATTGAAGTGTGTTTTTCAGTATTCGGGTTCCTAACACAAGTCTCACACCGTGTATTACTCAACCTCACTTTTGCTTGTAGATAGTATCTTTATCCTTAAAAAACTGTACTTTTTCCTCATTTATCAAACCCACTTTGATCCCCCCACCCTGAAAGTAAGAGAAAAAAGATACTCCGAATTGGATTTAAATCTCGTTGGTTCAGTTTGAGGCTGAACTTACTTGGACATTCTTCATTATGGACCATCTTCTTGATTAGAGTTTTCATGCTGATGGTAGATAACACTTTCCTTTTCTCTCAATGGTTACTGGATATTCTCTTTTACATGGATATCATCTAGTGAGATCATTTATGATGCATGCTAGAAGAATTTTTGGACACGTGGTTGAAAAAAAAAAAAAAAAATCAAATGATTTTCTTGATTCATTAAATGAAATGGATACCTTTTGCCCATTTTGATTCACAATTCTTTTGTATACTGTTATTTCTCAATTGAAGTTTGATACCTGTCAAGCGTACTTTTTGCAACCTTACTTGTAAATCCTTGGGTACATTTGTGGTTTTGGAATCGACACCCTTTGCTATAGATTGCTAAACTAAAAGTATGAAGTTTTGGATGGAGTATGATTTTTTTTTTTTTTTTTAAATGTTGATGTTACTAGATCTAATTTTACCTCAAGCCTTATTTTGGGGAAATTAGATGGCATTTTTGTCAAACTGTGCTTTGCTATTGGCTGGCATGGAGGTGGAATAATTCGTTTTGGCTAGCTGGCCCAAATCCACCATATATTTTACACAGGTTTAGTCATTATTGGATTTTGGTTACTGGTTGTTTTGCTCTATTCATAATCATTTTTTTCCCCTGTGCTGTTATGCAGTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATCGTAGAGAAGGTACAGTAGTATATCGTTCAAGTTTCTCTATCAAAATTGTTGCACGCTATATTTACTTCAGAATATGACCAACACCAGTTCTAAACAACGGATTTTACCATTTCTTTTCAGGTCTCTGAAGAGAGGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTCACTGTGAGTTTTCATTGCTTACTTTATGGGTGCCTGCTGAATTATGATACGTTCTTGTCTTGACGGTCTTCATATATTTTCATCATTCTTCAGATACAAAGGCGTCGAAGCGTTCTCGAGGATGACGATTAGCAAGTGATATGAATTGAACACCTTATAATGATATATGCATATACCAGCAGTCTTGGTTGTATGTTTACTTCTTGCGCGGTACAATATCTACCGTTTTACCTACTTTTCTGCTGCTACATTTTCATGTTCCCCCTCATAATCTCACCTCAGAATTCAAGAGCTCCTCGGAGTTAGCTGGTATTACACCATCTGTTGCCGTTAAATTCTCCAAACTATTAAGCTGTATGACAGATTGTCGACCTTTTACTATTATTTTGCTTTCTTATTTGTGATTGTTAAGAGGAATTGAATTTCCTTCTATTCTGGGTGTATTTTAATATAGAGATTGATCTGTCACTGTCTGATGATCCACACAAATTTGGAACCATTGAATATAAGCTCTTGGTAGGGTTGATTTGGATTGCTGTTTACTACTTATGATGAGAGTGC

mRNA sequence

ATGTCTATTTGCCAAGCTCGCGTCAATGCCAGGTTTGGTAGCACTAAAGAGATGGGTTCTGGAGAGAATCAGTGGTGGACTACTGTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATCGTAGAGAAGGTCTCTGAAGAGAGGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTCGAGGATGACGATTAG

Coding sequence (CDS)

ATGTCTATTTGCCAAGCTCGCGTCAATGCCAGGTTTGGTAGCACTAAAGAGATGGGTTCTGGAGAGAATCAGTGGTGGACTACTGTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTTGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATCGTAGAGAAGGTCTCTGAAGAGAGGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGCGTTCTCGAGGATGACGATTAG

Protein sequence

MSICQARVNARFGSTKEMGSGENQWWTTVARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

Homology

[Close]

BLAST of Spg012020 vs. NCBI nr
Match: KAG6594362.1 (Programmed cell death protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 26  WTTVARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQ 85
           W  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQ
Sbjct: 147 WHGVARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQ 206

Query: 86  RRRSVLEDDD 96
           RRRSVLEDDD
Sbjct: 207 RRRSVLEDDD 216

[Close]

BLAST of Spg012020 vs. NCBI nr
Match: XP_022142304.1 (DNA-binding protein DDB_G0278111 isoform X1 [Momordica charantia] >XP_022142305.1 DNA-binding protein DDB_G0278111 isoform X1 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 7.6e-24
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121

Query: 89  SVLEDDD 96
           SVLEDDD
Sbjct: 122 SVLEDDD 128

[Close]

BLAST of Spg012020 vs. NCBI nr
Match: KAA8519555.1 (hypothetical protein F0562_013821 [Nyssa sinensis])

HSP 1 Score: 120.6 bits (301), Expect = 7.6e-24
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121

Query: 89  SVLEDDD 96
           SVLEDDD
Sbjct: 122 SVLEDDD 128

[Close]

BLAST of Spg012020 vs. NCBI nr
Match: XP_022142306.1 (DNA-binding protein DDB_G0278111 isoform X2 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 7.6e-24
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 49  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 108

Query: 89  SVLEDDD 96
           SVLEDDD
Sbjct: 109 SVLEDDD 115

[Close]

BLAST of Spg012020 vs. NCBI nr
Match: XP_038881892.1 (DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding protein DDB_G0278111 [Benincasa hispida])

HSP 1 Score: 120.6 bits (301), Expect = 7.6e-24
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121

Query: 89  SVLEDDD 96
           SVLEDDD
Sbjct: 122 SVLEDDD 128

[Close]

BLAST of Spg012020 vs. ExPASy Swiss-Prot
Match: Q54YS0 (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-10
Identity = 35/67 (52.24%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           ++RI +VKPEK+R +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ TK+T +T++RR 
Sbjct: 54  LSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLLEQL-SEKTKKTTITMKRR- 113

Query: 89  SVLEDDD 96
             +EDDD
Sbjct: 114 -TIEDDD 117

[Close]

BLAST of Spg012020 vs. ExPASy Swiss-Prot
Match: O14737 (Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           ++ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR+
Sbjct: 56  LSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRK 115

Query: 89  SVLEDDD 96
            +  D+D
Sbjct: 116 VMDSDED 122

[Close]

BLAST of Spg012020 vs. ExPASy Swiss-Prot
Match: Q5RBT0 (Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           ++ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR+
Sbjct: 56  LSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRK 115

Query: 89  SVLEDDD 96
            +  D+D
Sbjct: 116 VMDSDED 122

[Close]

BLAST of Spg012020 vs. ExPASy Swiss-Prot
Match: Q2HJH9 (Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           ++ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR+
Sbjct: 56  LSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRK 115

Query: 89  SVLEDDD 96
            +  D+D
Sbjct: 116 VMDSDED 122

[Close]

BLAST of Spg012020 vs. ExPASy Swiss-Prot
Match: P56812 (Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           ++ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR+
Sbjct: 56  LSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRK 115

Query: 89  SVLEDDD 96
            +  D+D
Sbjct: 116 VMDSDED 122

[Close]

BLAST of Spg012020 vs. ExPASy TrEMBL
Match: A0A6J1CKK4 (DNA-binding protein DDB_G0278111 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012456 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.7e-24
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121

Query: 89  SVLEDDD 96
           SVLEDDD
Sbjct: 122 SVLEDDD 128

[Close]

BLAST of Spg012020 vs. ExPASy TrEMBL
Match: A0A5J4ZLS1 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_013821 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.7e-24
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121

Query: 89  SVLEDDD 96
           SVLEDDD
Sbjct: 122 SVLEDDD 128

[Close]

BLAST of Spg012020 vs. ExPASy TrEMBL
Match: A0A6J1CLT3 (DNA-binding protein DDB_G0278111 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012456 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.7e-24
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 49  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 108

Query: 89  SVLEDDD 96
           SVLEDDD
Sbjct: 109 SVLEDDD 115

[Close]

BLAST of Spg012020 vs. ExPASy TrEMBL
Match: A0A498IT06 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017442 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.3e-24
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI+LLEQINNQTTKQTKVTIQRRR
Sbjct: 86  IARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLISLLEQINNQTTKQTKVTIQRRR 145

Query: 89  SVLEDDD 96
           SVLEDDD
Sbjct: 146 SVLEDDD 152

[Close]

BLAST of Spg012020 vs. ExPASy TrEMBL
Match: A0A5N5FEY4 (DNA-binding protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_002418 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.3e-24
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLI+LLEQINNQTTKQTKVTIQRRR
Sbjct: 53  IARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLISLLEQINNQTTKQTKVTIQRRR 112

Query: 89  SVLEDDD 96
           SVLEDDD
Sbjct: 113 SVLEDDD 119

[Close]

BLAST of Spg012020 vs. TAIR 10
Match: AT1G29850.1 (double-stranded DNA-binding family protein )

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT QRRR
Sbjct: 65  IARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTYQRRR 124

Query: 89  SVLEDDD 96
            V  DDD
Sbjct: 125 GV--DDD 129

[Close]

BLAST of Spg012020 vs. TAIR 10
Match: AT1G29850.2 (double-stranded DNA-binding family protein )

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT QRRR
Sbjct: 66  IARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTYQRRR 125

Query: 89  SVLEDDD 96
            V  DDD
Sbjct: 126 GV--DDD 130

[Close]

BLAST of Spg012020 vs. TAIR 10
Match: AT1G29850.3 (double-stranded DNA-binding family protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-21
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 29  VARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 88
           +ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT+    
Sbjct: 65  IARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTVSTNG 124

Query: 89  SV 91
           +V
Sbjct: 125 AV 126

The following BLAST results are available for this feature:

BLAST of Spg012020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594362.1	1.2e-24	95.71	Programmed cell death protein 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022142304.1	7.6e-24	98.51	DNA-binding protein DDB_G0278111 isoform X1 [Momordica charantia] >XP_022142305....	[more]
KAA8519555.1	7.6e-24	98.51	hypothetical protein F0562_013821 [Nyssa sinensis]	[more]
XP_022142306.1	7.6e-24	98.51	DNA-binding protein DDB_G0278111 isoform X2 [Momordica charantia]	[more]
XP_038881892.1	7.6e-24	98.51	DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding...	[more]

BLAST of Spg012020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54YS0	1.7e-10	52.24	DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G02...	[more]
O14737	1.0e-07	43.28	Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3	[more]
Q5RBT0	1.0e-07	43.28	Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3	[more]
Q2HJH9	1.3e-07	43.28	Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3	[more]
P56812	1.3e-07	43.28	Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3	[more]

BLAST of Spg012020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKK4	3.7e-24	98.51	DNA-binding protein DDB_G0278111 isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5J4ZLS1	3.7e-24	98.51	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_013821 PE=3 SV=1	[more]
A0A6J1CLT3	3.7e-24	98.51	DNA-binding protein DDB_G0278111 isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A498IT06	6.3e-24	97.01	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_017442 PE=3 SV=1	[more]
A0A5N5FEY4	6.3e-24	97.01	DNA-binding protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_00...	[more]

BLAST of Spg012020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29850.1	6.2e-24	91.04	double-stranded DNA-binding family protein	[more]
AT1G29850.2	6.2e-24	91.04	double-stranded DNA-binding family protein	[more]
AT1G29850.3	1.7e-21	87.10	double-stranded DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002836	PDCD5-like	PFAM	PF01984	dsDNA_bind	coord: 30..87 e-value: 4.9E-17 score: 62.2
IPR002836	PDCD5-like	PANTHER	PTHR10840	PROGRAMMED CELL DEATH PROTEIN 5	coord: 27..93
IPR036883	PDCD5-like superfamily	GENE3D	1.10.8.140		coord: 6..86 e-value: 1.2E-19 score: 71.8
IPR036883	PDCD5-like superfamily	SUPERFAMILY	46950	Double-stranded DNA-binding domain	coord: 28..84
None	No IPR available	PANTHER	PTHR10840:SF3	BNAA07G07610D PROTEIN	coord: 27..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg012020.1	Spg012020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding