Spg011978 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011978
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Vacuolar ATPase assembly integral membrane protein VMA21 homolog
Location	scaffold1: 664828 .. 666315 (+)
RNA-Seq Expression	Spg011978
Synteny	Spg011978

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTCTCGTCGCCGGCGACCTGTCGCCAGAAGCACTAGCCATCCGCACGCGCTAGAGGACCTGCGGCCGCGTCGTCTGTCAGCCACCGCGTGCCGCTACGAAGAAGAACGCCGAACAGGACCCACGCTGTCACCGTCTAGCCCAAATCCAGCCTTGATTCCGACTCCTGTATAGTCGCCGCCGTTTCAATTCACCGTCGTCGCCGCCGATTGTGGGTTGCGGCAGAGTGTAGTTTGGGTAAGAGATAATGCGAAACCTAAATCTAGAATGAAGGAGAGAAAGAGAGAAGAGGTGTACTGTGCAGAATGGGTAAACAAATGAGGGGAGAAGAATGAAATTCACAGTAGCAAAACGGGGTTATTCTTTTGTGATTTTCATTTACGAATCACGTAGACTACTTATCCGTGGATGATTTATTTGTGATTTCTTCTGCTTTTTTCTAAACTTTAGTTGTTTCCTCTCTCTGTGGTCTTTCATCTTTATGGATGCTTATTCGGTGGTTTTTCCTTTTTCATTTTATGATTGCGCCTTCTCTTTTTCGTTTTATTTCATCTGTAGATGACAATCACGTCTTCAAATTTCTGAACCTACCTCCTTTCCATTTTCATGCATATATCCGTTTGCTGCTGGTATACAGGATAATGAAGGTTATGAAGTGTACTTTGGGAGGATTTTTGTATTATTTTTTTAAAAGTGTGAATCAAACACCACTGCTATATCAAGAACAATATTTTAAAACTAAATTCTAATCAATATATATAACTTAGAATTAGAAAAATTAACCTGCACGATATTCACCATTATACCAAAAAGCCCGAATATCTACTAAAATGTATATTGCTTTATTCCACACTTCAAAGCATGAAATTTTACCAGAGTCTATATTGCCACTTCCTTTCAGATGTGCAAGAATAAAAAAAGGGTAGAACAAAGAGCTCACTTTTGTAAAGCCATCTTTTTCCTACTTTTTAGTTTTAGTTCTCTGTCTTCATCTTTCATTTACTTACAAAACTCGTTCTACGCCTTCTTTTTCCATCTCCATGTCCTCAAGATTTCATAACAACTTCTTGTTTGCAGTGTGGATGAACTCAAGTTTTCTGGAATCCATGCTGTGTACTCCATGGCAATCCAAGTCCAATTCTGAAACTTAATTTAAGGTTCGGTTCAGTGATCTTTTGTTTGGTATTAAATTTGATGTTCTTTTTTTTTAAAAAAAAAAATTGTTTGAAGGCTCTGAAATTCTTATTCTTGTTTAGTATAAAAAATTATATATCTAACAACTTTATCTTTTCAGACATTGTTTAGAAATTGAAGGTACCAATGGCAAGCGTCATTATGAAGTTCTTCATTGCATCACTGTTTATGTGGATAACTCCCATCGCATTGTTATATGGTTTTAACCATAATTTGATTCCTGGTAAGATTTATTTGCACAAGTACTTACATCTGTTGCTAATGTCGTTGCTTTCCCCCCTGAAAGATTTTTGA

mRNA sequence

GAGTCTCGTCGCCGGCGACCTGTCGCCAGAAGCACTAGCCATCCGCACGCGCTAGAGGACCTGCGGCCGCGTCGTCTGTCAGCCACCGCGTGCCGCTACGAAGAAGAACGCCGAACAGGACCCACGCTGTCACCGTCTAGCCCAAATCCAGCCTTGATTCCGACTCCTGTACCAATGGCAAGCGTCATTATGAAGTTCTTCATTGCATCACTGTTTATGTGGATAACTCCCATCGCATTGTTATATGGTTTTAACCATAATTTGATTCCTGGTAAGATTTATTTGCACAAGTACTTACATCTGTTGCTAATGTCGTTGCTTTCCCCCCTGAAAGATTTTTGA

Coding sequence (CDS)

GAGTCTCGTCGCCGGCGACCTGTCGCCAGAAGCACTAGCCATCCGCACGCGCTAGAGGACCTGCGGCCGCGTCGTCTGTCAGCCACCGCGTGCCGCTACGAAGAAGAACGCCGAACAGGACCCACGCTGTCACCGTCTAGCCCAAATCCAGCCTTGATTCCGACTCCTGTACCAATGGCAAGCGTCATTATGAAGTTCTTCATTGCATCACTGTTTATGTGGATAACTCCCATCGCATTGTTATATGGTTTTAACCATAATTTGATTCCTGGTAAGATTTATTTGCACAAGTACTTACATCTGTTGCTAATGTCGTTGCTTTCCCCCCTGAAAGATTTTTGA

Protein sequence

ESRRRRPVARSTSHPHALEDLRPRRLSATACRYEEERRTGPTLSPSSPNPALIPTPVPMASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLSPLKDF

Homology

[Close]

BLAST of Spg011978 vs. NCBI nr
Match: XP_038882777.1 (protein SUPPRESSOR OF FRI 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-09
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 57  VPMASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           +PMASVI KFFIASLFMWITPIALLYGFNHNLIPG   L+ +   LL   L+
Sbjct: 105 IPMASVITKFFIASLFMWITPIALLYGFNHNLIPGSTQLNPHSLTLLSGFLA 156

[Close]

BLAST of Spg011978 vs. NCBI nr
Match: XP_022146488.1 (uncharacterized protein LOC111015696 [Momordica charantia] >XP_022146489.1 uncharacterized protein LOC111015696 [Momordica charantia] >XP_022146490.1 uncharacterized protein LOC111015696 [Momordica charantia] >XP_022146492.1 uncharacterized protein LOC111015696 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-08
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 59  MASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           MASVIMKFF ASLFMWITPIALLYGFNHNLIPG   L+ +   LL   L+
Sbjct: 1   MASVIMKFFTASLFMWITPIALLYGFNHNLIPGSTQLNPHSLTLLSGFLA 50

[Close]

BLAST of Spg011978 vs. NCBI nr
Match: XP_022977993.1 (uncharacterized protein LOC111478118 [Cucurbita maxima] >XP_022977994.1 uncharacterized protein LOC111478118 [Cucurbita maxima])

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-07
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 59  MASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           MA VI KFFIASLFMWITPI LLYGFNHNLIPG  +L+ +   LL   L+
Sbjct: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTHLNPHSLTLLSGFLA 50

[Close]

BLAST of Spg011978 vs. NCBI nr
Match: XP_022926009.1 (uncharacterized protein LOC111433255 [Cucurbita moschata] >XP_022926010.1 uncharacterized protein LOC111433255 [Cucurbita moschata] >XP_023543189.1 uncharacterized protein LOC111803138 [Cucurbita pepo subsp. pepo] >KAG7034797.1 hypothetical protein SDJN02_04529 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-07
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 59  MASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           MA VI KFFIASLFMWITPI LLYGFNHNLIPG   L+ +   LL   L+
Sbjct: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLA 50

[Close]

BLAST of Spg011978 vs. NCBI nr
Match: KAA0052446.1 (hypothetical protein E6C27_scaffold120G00430 [Cucumis melo var. makuwa] >TYK13376.1 hypothetical protein E5676_scaffold255G0010040 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-07
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 57  VPMASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           VPMA+VI KFFIASLFMWITPI LL+GFNHN IPG   L+ +   LL   L+
Sbjct: 83  VPMANVITKFFIASLFMWITPITLLHGFNHNWIPGSTRLNPHSLTLLSGFLA 134

[Close]

BLAST of Spg011978 vs. ExPASy TrEMBL
Match: A0A6J1CYA2 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Momordica charantia OX=3673 GN=LOC111015696 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-08
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 59  MASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           MASVIMKFF ASLFMWITPIALLYGFNHNLIPG   L+ +   LL   L+
Sbjct: 1   MASVIMKFFTASLFMWITPIALLYGFNHNLIPGSTQLNPHSLTLLSGFLA 50

[Close]

BLAST of Spg011978 vs. ExPASy TrEMBL
Match: A0A0A0KPB7 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G526400 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.7e-08
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 57  VPMASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           VPMA+VIMKFFIASLFMWITPI LL+GFNHN IPG   L+ +   LL   L+
Sbjct: 171 VPMANVIMKFFIASLFMWITPITLLHGFNHNWIPGSTQLNPHSLTLLSGFLA 222

[Close]

BLAST of Spg011978 vs. ExPASy TrEMBL
Match: A0A6J1ISV9 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucurbita maxima OX=3661 GN=LOC111478118 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 59  MASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           MA VI KFFIASLFMWITPI LLYGFNHNLIPG  +L+ +   LL   L+
Sbjct: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTHLNPHSLTLLSGFLA 50

[Close]

BLAST of Spg011978 vs. ExPASy TrEMBL
Match: A0A6J1EJT7 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucurbita moschata OX=3662 GN=LOC111433255 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.7e-07
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 59  MASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           MA VI KFFIASLFMWITPI LLYGFNHNLIPG   L+ +   LL   L+
Sbjct: 1   MAGVITKFFIASLFMWITPIILLYGFNHNLIPGSTQLNPHSLTLLSGFLA 50

[Close]

BLAST of Spg011978 vs. ExPASy TrEMBL
Match: A0A5A7UE48 (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010040 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.7e-07
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 57  VPMASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           VPMA+VI KFFIASLFMWITPI LL+GFNHN IPG   L+ +   LL   L+
Sbjct: 83  VPMANVITKFFIASLFMWITPITLLHGFNHNWIPGSTRLNPHSLTLLSGFLA 134

[Close]

BLAST of Spg011978 vs. TAIR 10
Match: AT1G05780.1 (Vacuolar ATPase assembly integral membrane protein VMA21-like domain )

HSP 1 Score: 57.4 bits (137), Expect = 8.7e-09
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 59  MASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           MA V+ KF IAS+FMWI P+A+LYGFNHNL+PG   L  +  +LL   L+
Sbjct: 1   MAGVMHKFLIASMFMWILPVAILYGFNHNLLPGSTTLSPHSLILLSGFLA 50

[Close]

BLAST of Spg011978 vs. TAIR 10
Match: AT2G31710.1 (Vacuolar ATPase assembly integral membrane protein VMA21-like domain )

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-07
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 59  MASVIMKFFIASLFMWITPIALLYGFNHNLIPGKIYLHKYLHLLLMSLLS 109
           MA V+ KF IAS+FMWI PIA+LYGFN++L+PG   L  +   LL   L+
Sbjct: 1   MAGVMQKFLIASMFMWILPIAILYGFNNDLLPGSTTLSPHSLTLLSGFLA 50

The following BLAST results are available for this feature:

BLAST of Spg011978 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882777.1	6.3e-09	71.15	protein SUPPRESSOR OF FRI 4-like isoform X1 [Benincasa hispida]	[more]
XP_022146488.1	5.3e-08	72.00	uncharacterized protein LOC111015696 [Momordica charantia] >XP_022146489.1 uncha...	[more]
XP_022977993.1	3.4e-07	68.00	uncharacterized protein LOC111478118 [Cucurbita maxima] >XP_022977994.1 uncharac...	[more]
XP_022926009.1	7.7e-07	68.00	uncharacterized protein LOC111433255 [Cucurbita moschata] >XP_022926010.1 unchar...	[more]
KAA0052446.1	7.7e-07	65.38	hypothetical protein E6C27_scaffold120G00430 [Cucumis melo var. makuwa] >TYK1337...	[more]

BLAST of Spg011978 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg011978 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYA2	2.6e-08	72.00	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Momordica ch...	[more]
A0A0A0KPB7	5.7e-08	67.31	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis sati...	[more]
A0A6J1ISV9	1.7e-07	68.00	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucurbita ma...	[more]
A0A6J1EJT7	3.7e-07	68.00	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucurbita mo...	[more]
A0A5A7UE48	3.7e-07	65.38	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Cucumis melo...	[more]

BLAST of Spg011978 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05780.1	8.7e-09	56.00	Vacuolar ATPase assembly integral membrane protein VMA21-like domain	[more]
AT2G31710.1	2.1e-07	54.00	Vacuolar ATPase assembly integral membrane protein VMA21-like domain	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011978.1	Spg011978.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly
cellular_component	GO:0098588	bounding membrane of organelle
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane