Spg011955 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011955
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	prefoldin subunit 6
Location	scaffold1: 1731459 .. 1733949 (-)
RNA-Seq Expression	Spg011955
Synteny	Spg011955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCCTTCACGATTATCAAGGAGCTTCAGCGCGATCTCAAGATGAAAGGCAGAGATCTCAGAAATTTACAGAAAGGCAAGCATCGTAACTTCGATCTTCCTCTCTCTTTCTTCGCTCTCACCGTCCGACTTAGCCTTCTCAATCCTGTAATTTCATTTTCATTCCTTCAAATTCCATGAATCTACGATTCTACGCATTCTCTTGCGCAATTTTTGGTTTGAAGATCTGATGTATGATTCGAAATTCCGATGTGGTGAATGATCGGCCAGGCTTTGCGAAGAACTACAAAGTAAGACTGAAGTATGATACAGAGCTGGGTGAAAGCGAGTTTGCTCTCAAGGTTGTAGCATTTCTTCACTTAAATAACGCTTTACTTCTACTTCTTGCCTGGTTTATGAGAAGTTAAAGGTAAATATGAATCTGTCCGAAGTTTTATGTATTTCTTGTCAATCTTTTCGTGTTTGACTCCGCTTCATGTCTGCATGTTATTTGAGTCGTTACTGTGATTGGTTTAGGCACCACTGAATTGATAATACACAGCAAAATCAATTAAAATCTGTTTCGAAACGCATTATGTTGCGTATACTGTATTCAACGCATTGAAGCGAGTGAAAGTTTGTGACTATTTGCCTCTGGTCCATATCAACAAGGGAACTGTCGTCGTCTTCAAGTCTGAGACAACTGTTATATAGCGTCTAGGCCTTTTATTTTTAATTCTTGCATTCTTTTTGGCGTTATGCAGGAGTTGGATATGCTGAAAGAGGATGCAATTGTTTACAGATTAGTTGGTCCTATTCTTGTGAAGCAAGATCTAGGAGAGCCAAATGCAAATGTTCAAAAGAGAATTGGTCATCTCGCTGCTGAATTGTATGTTTCTCTGTCACAGTTCTTTTCAGTATGTGGTGGATTTACATTGTGCTAATGTTCTTCAGCTACGAAGTTGCTTGGTTCACTTGCTAACTCTGACCTAATGCGAAGATTTATTTATCCACTGTTTAAGCACAAGTAATGAGTTACCAGTGTGCGTGGTACAGAAAAAAGAAATATCAGATTAGTTCATATTTTCTTCCTCTGCCTTGCGTTGCATTATTCTGCTTTTAATAGTTTGTACGACGCAATGGCCATTTAGTTTATTGAACATTGTATTTTTGTTGTTAATTTTCAATTAGGTGAAAGCAGAATTTCAATTTTAAAACTTGTATCATAGCCAATTATTGTTAAATGCCTGAATCAAATGTTTATTTGAGATATGAGCCCCTTGCTTCAGGGGGTCGTGTAAGAGCTGTTATAATGGAAAAATGTAACATCTTCTAGTTCTAGCAATGCAATACTGCTGTAGTTTATAGCAGTAATTAGCATTAATAATTAAGATTACCAGTTCTTTTTGTTGTTTAATATTTTCTGCATATGAGATATCACCTTTTCTTTCATGTCTTATTCTTATCAATCTAACAATTCTCTTAATTTTGGTATGTCCTGCTTGCAACCCTACATACTTGGTTCTAACAACAACCTATCTTGAGAATTTGGTGTTCTTGAAATGTTCTTCATTTCTACGTTAGTGGATTTCTTCATTGTAGGTTGACTAGTATACTGGTATTGTAGTTGTGAGTATGTGTTATCTCTGACCATAAGAATTCTAATTTTTCAATACAGAGACCGCGTTGATGCAATTATCGGAGATTTTGAAGAGAAGCAAATTAGCAAAAGAGAGAAGGTCAGTATTAGTATTGCTTTATCATTCATTTGGACATAGAAATCTATGCCTTCAGATTGTGTACTTATTTTACTGGTCAGTATATGATGATTTGCCCTGACTTTTATGGATTGGTGCTGAAATTTTCTGAACTCAAATTCTTTCATGACCATAGGTTCAAGTATTGATGGCCACTTTTATCAAAAAAAAAAAGTATTGATGGCCACTTTATTTTTTTTTTTTTGAAAAAAGAAATTATTATCTCACAAGTTCCTTATTTTCATATTTAAACTAATATTCAAGTGGTATGGGTTGATGAAGTTGAAAGAATATTATTGCCTTTCTGTTGGGTTGGCATGTGGTACATGCATATATTATTATTCATGCCTTTTATTTTTTATTTGTATTGGTATTTTTATTTTTGAAAACGGTCGTGCCCTTTTCCTACACAATACAGCATAGCATTTGAATCAGACGTGAGTGCTTCTAATCGTTTCATGGTCGGTCTTCTCGACAGATTTCCAAGGTAGAGCGAAGGATTCGATCTCTTAAGCTTGGGATGACAAATGCATAGTATGTTTTCTTTTTCACTCTTATTATACGAGGTTTCAGAATTCTTTGTTCCAAAATACGGGCCATCTCTAGTCACTTCTTAATAGCAATATTAGGTGGGTTTAATAAAGAAAAGGAGAGATTAGAAAATATAGGAAGTATATACTCTGTCTTCTGCATGAACCGAAAATTTTGTTTTGCAGTTTTGATTTTGATCAATACAGATATTACATTGGGAA

mRNA sequence

ATGAGCTCCTTCACGATTATCAAGGAGCTTCAGCGCGATCTCAAGATGAAAGGCAGAGATCTCAGAAATTTACAGAAAGGCAAGCATCGTAACTTCGATCTTCCTCTCTCTTTCTTCGCTCTCACCGTCCGACTTAGCCTTCTCAATCCTGAGTTGGATATGCTGAAAGAGGATGCAATTGTTTACAGATTAGTTGGTCCTATTCTTGTGAAGCAAGATCTAGGAGAGCCAAATGCAAATGTTCAAAAGAGAATTGGTCATCTCGCTGCTGAATTAGACCGCGTTGATGCAATTATCGGAGATTTTGAAGAGAAGCAAATTAGCAAAAGAGAGAAGATTTCCAAGGTAGAGCGAAGGATTCGATCTCTTAAGCTTGGGATGACAAATGCATAG

Coding sequence (CDS)

ATGAGCTCCTTCACGATTATCAAGGAGCTTCAGCGCGATCTCAAGATGAAAGGCAGAGATCTCAGAAATTTACAGAAAGGCAAGCATCGTAACTTCGATCTTCCTCTCTCTTTCTTCGCTCTCACCGTCCGACTTAGCCTTCTCAATCCTGAGTTGGATATGCTGAAAGAGGATGCAATTGTTTACAGATTAGTTGGTCCTATTCTTGTGAAGCAAGATCTAGGAGAGCCAAATGCAAATGTTCAAAAGAGAATTGGTCATCTCGCTGCTGAATTAGACCGCGTTGATGCAATTATCGGAGATTTTGAAGAGAAGCAAATTAGCAAAAGAGAGAAGATTTCCAAGGTAGAGCGAAGGATTCGATCTCTTAAGCTTGGGATGACAAATGCATAG

Protein sequence

MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAIVYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRIRSLKLGMTNA

Homology

[Close]

BLAST of Spg011955 vs. NCBI nr
Match: XP_006305775.1 (prefoldin subunit 6 [Capsella rubella] >EOA38673.1 hypothetical protein CARUB_v10010629mg [Capsella rubella])

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-24
Identity = 64/130 (49.23%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAI 60
           MSS T +++LQRDL+ K  DL  +QK   +N  L   +        L+  ELD+L+EDA 
Sbjct: 1   MSSSTAVRDLQRDLENKANDLGKIQKDIAKNHQLRKKYTIQLGENELVLKELDLLEEDAN 60

Query: 61  VYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRI 120
           VY+L+GP+LVKQDL E NANV+KRI +++AEL R+DAI+ D EEKQ +KRE I K+++R+
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKLQQRL 120

Query: 121 RSLKLGMTNA 131
           +S++ G   A
Sbjct: 121 QSIQAGKAKA 130

[Close]

BLAST of Spg011955 vs. NCBI nr
Match: XP_010460778.1 (PREDICTED: prefoldin subunit 6-like [Camelina sativa] >XP_010478374.1 PREDICTED: prefoldin subunit 6 [Camelina sativa])

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-24
Identity = 64/130 (49.23%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAI 60
           MSS T +++LQRDL+ K  DL  +QK   +N  L   +        L+  ELD+L+EDA 
Sbjct: 1   MSSSTAVRDLQRDLENKANDLGKIQKDIAKNHQLRKKYTIQLGENELVLKELDLLEEDAN 60

Query: 61  VYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRI 120
           VY+L+GP+LVKQDL E NANV+KRI +++AEL R+DAI+ D EEKQ +KRE I K+++R+
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKREAIMKLQQRL 120

Query: 121 RSLKLGMTNA 131
           +S++ G   A
Sbjct: 121 QSIQAGKAKA 130

[Close]

BLAST of Spg011955 vs. NCBI nr
Match: XP_021626852.1 (prefoldin subunit 6 [Manihot esculenta])

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-23
Identity = 66/130 (50.77%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 1   MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAI 60
           M+S T I+ELQRDL+ K  DL  LQK   +N  +   +        L+  ELD+L EDA 
Sbjct: 1   MASSTAIRELQRDLENKANDLSKLQKDIAKNHQVRKKYTVQLGENELVLKELDLLDEDAN 60

Query: 61  VYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRI 120
           VY+L+GP+LVKQDL E NANV+KRI +++AEL R+DA + D EEKQ SK++ I KV++RI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDATLQDLEEKQNSKKDAILKVQQRI 120

Query: 121 RSLKLGMTNA 131
           +SL+ G   A
Sbjct: 121 QSLQAGKAKA 130

[Close]

BLAST of Spg011955 vs. NCBI nr
Match: XP_010499519.1 (PREDICTED: prefoldin subunit 6 [Camelina sativa])

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-23
Identity = 63/130 (48.46%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAI 60
           MSS T +++LQRDL+ K  DL  +QK   +N  L   +        L+  ELD+L+EDA 
Sbjct: 1   MSSSTAVRDLQRDLENKANDLGKIQKDIAKNHQLRKKYTIQLGENELVLKELDLLEEDAN 60

Query: 61  VYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRI 120
           VY+L+GP+LVKQDL E NAN++KRI +++AEL R+DAI+ D EEKQ +KRE I K+++R+
Sbjct: 61  VYKLIGPVLVKQDLAEANANIRKRIEYISAELKRLDAILQDMEEKQNNKREAIMKLQQRL 120

Query: 121 RSLKLGMTNA 131
           +S++ G   A
Sbjct: 121 QSIQAGKAKA 130

[Close]

BLAST of Spg011955 vs. NCBI nr
Match: XP_010110983.2 (prefoldin subunit 6 [Morus notabilis])

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-23
Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 1   MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAI 60
           M+S + +KELQRDL+ K  DL  LQK   +N  +   +        L+  ELD+LKEDA 
Sbjct: 1   MASASAVKELQRDLENKANDLSKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLKEDAN 60

Query: 61  VYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRI 120
           VY+L+GP+LVKQDL E NANV+KRI +++AEL R+DA + D EEKQ SK+E I KV+ RI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAALQDLEEKQNSKKEAILKVQPRI 120

Query: 121 RSLKLG 127
           +SL+ G
Sbjct: 121 QSLQAG 126

[Close]

BLAST of Spg011955 vs. ExPASy Swiss-Prot
Match: A8Y197 (Probable prefoldin subunit 6 OS=Caenorhabditis briggsae OX=6238 GN=pfd-6 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-10
Identity = 32/103 (31.07%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 21  LRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAIVYRLVGPILVKQDLGEPNAN 80
           L+ L+K + + F               +  ELD++  D+ VY+L+GP+LV+QDL E  + 
Sbjct: 14  LKTLEKDREKYFSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQDLEEARST 73

Query: 81  VQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRIRSL 124
           V+KR+  + +E+ RV+A I D  +K I +R+K+  +++  + +
Sbjct: 74  VEKRLEFIESEIKRVEASITDVNKKSIEQRDKVMNMQKAFQMM 116

[Close]

BLAST of Spg011955 vs. ExPASy Swiss-Prot
Match: P52554 (Probable prefoldin subunit 6 OS=Caenorhabditis elegans OX=6239 GN=pfd-6 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.7e-09
Identity = 31/103 (30.10%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 21  LRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAIVYRLVGPILVKQDLGEPNAN 80
           LR L+K + + F               +  ELD+++ D+ VY+L+G +LV+QDL E  + 
Sbjct: 14  LRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARST 73

Query: 81  VQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRIRSL 124
           V+KR+  + +E  RV+A I D  +K   +R+K+  +++  + +
Sbjct: 74  VEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNMQKSFQMM 116

[Close]

BLAST of Spg011955 vs. ExPASy Swiss-Prot
Match: Q17Q89 (Prefoldin subunit 6 OS=Bos taurus OX=9913 GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 32/121 (26.45%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 10  LQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAIVYRLVGPIL 69
           +Q+ L+ +    + LQK   ++        A     +++  EL +L    +V++L+GP+L
Sbjct: 5   IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVL 64

Query: 70  VKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRIRSLKLGMTN 129
           VKQ+LGE  A V KR+ ++ AE+ R ++ + D E++   +RE ++++++  +  +     
Sbjct: 65  VKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEFQRAQAAKAG 124

Query: 130 A 131
           A
Sbjct: 125 A 125

[Close]

BLAST of Spg011955 vs. ExPASy Swiss-Prot
Match: Q5TJE6 (Prefoldin subunit 6 OS=Canis lupus familiaris OX=9615 GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08
Identity = 32/121 (26.45%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 10  LQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAIVYRLVGPIL 69
           +Q+ L+ +    + LQK   ++        A     +++  EL +L    +V++L+GP+L
Sbjct: 5   IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVL 64

Query: 70  VKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRIRSLKLGMTN 129
           VKQ+LGE  A V KR+ ++ AE+ R ++ + D E +   +RE ++++++  +  +     
Sbjct: 65  VKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAG 124

Query: 130 A 131
           A
Sbjct: 125 A 125

[Close]

BLAST of Spg011955 vs. ExPASy Swiss-Prot
Match: O15212 (Prefoldin subunit 6 OS=Homo sapiens OX=9606 GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08
Identity = 32/121 (26.45%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 10  LQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAIVYRLVGPIL 69
           +Q+ L+ +    + LQK   ++        A     +++  EL +L    +V++L+GP+L
Sbjct: 5   IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVL 64

Query: 70  VKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRIRSLKLGMTN 129
           VKQ+LGE  A V KR+ ++ AE+ R ++ + D E +   +RE ++++++  +  +     
Sbjct: 65  VKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAG 124

Query: 130 A 131
           A
Sbjct: 125 A 125

[Close]

BLAST of Spg011955 vs. ExPASy TrEMBL
Match: R0INH2 (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10010629mg PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 64/130 (49.23%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAI 60
           MSS T +++LQRDL+ K  DL  +QK   +N  L   +        L+  ELD+L+EDA 
Sbjct: 1   MSSSTAVRDLQRDLENKANDLGKIQKDIAKNHQLRKKYTIQLGENELVLKELDLLEEDAN 60

Query: 61  VYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRI 120
           VY+L+GP+LVKQDL E NANV+KRI +++AEL R+DAI+ D EEKQ +KRE I K+++R+
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKLQQRL 120

Query: 121 RSLKLGMTNA 131
           +S++ G   A
Sbjct: 121 QSIQAGKAKA 130

[Close]

BLAST of Spg011955 vs. ExPASy TrEMBL
Match: A0A2C9UYI5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G058500 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.0e-24
Identity = 66/130 (50.77%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 1   MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAI 60
           M+S T I+ELQRDL+ K  DL  LQK   +N  +   +        L+  ELD+L EDA 
Sbjct: 1   MASSTAIRELQRDLENKANDLSKLQKDIAKNHQVRKKYTVQLGENELVLKELDLLDEDAN 60

Query: 61  VYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRI 120
           VY+L+GP+LVKQDL E NANV+KRI +++AEL R+DA + D EEKQ SK++ I KV++RI
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIDYISAELKRLDATLQDLEEKQNSKKDAILKVQQRI 120

Query: 121 RSLKLGMTNA 131
           +SL+ G   A
Sbjct: 121 QSLQAGKAKA 130

[Close]

BLAST of Spg011955 vs. ExPASy TrEMBL
Match: D7KEP4 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_890536 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.6e-24
Identity = 63/130 (48.46%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAI 60
           MSS T +++LQ+DL+ K  DL  +QK   +N  L   +        L+  ELD+L+EDA 
Sbjct: 1   MSSSTAVRDLQKDLENKANDLGKIQKDIGKNHQLRKKYTIQLGENELVLKELDLLEEDAN 60

Query: 61  VYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRI 120
           VY+L+GP+LVKQDL E NANV+KRI +++AEL R+DAI+ D EEKQ +KRE I K+++R+
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKLQQRL 120

Query: 121 RSLKLGMTNA 131
           +S++ G   A
Sbjct: 121 QSIQAGKAKA 130

[Close]

BLAST of Spg011955 vs. ExPASy TrEMBL
Match: A0A6J1B4T0 (prefoldin subunit 6 OS=Herrania umbratica OX=108875 GN=LOC110424169 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 66/129 (51.16%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 2   SSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAIV 61
           SS T ++ELQRDL+ K  DL  LQK   +N  +   +        L+  ELD+L EDA V
Sbjct: 3   SSSTAVRELQRDLENKANDLSKLQKDIAKNHQVRKKYTIQLGENELVLKELDLLNEDANV 62

Query: 62  YRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRIR 121
           Y+L+GP+LVKQDL E NANV+KRI +++AEL R+DA + D EEKQ SKRE I KV++RI+
Sbjct: 63  YKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDASLQDLEEKQYSKREAILKVQQRIQ 122

Query: 122 SLKLGMTNA 131
           S + G   A
Sbjct: 123 SHQAGKAKA 131

[Close]

BLAST of Spg011955 vs. ExPASy TrEMBL
Match: A0A061GKX2 (Prefoldin 6 isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_029496 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 66/129 (51.16%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 2   SSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAIV 61
           SS T ++ELQRDL+ K  DL  LQK   +N  +   +        L+  ELD+L EDA V
Sbjct: 3   SSSTALRELQRDLENKANDLSKLQKDIAKNHQVKKKYTIQLGENELVLKELDLLNEDANV 62

Query: 62  YRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRIR 121
           Y+L+GP+LVKQDL E NANV+KRI +++AEL R+DA + D EEKQ SKRE I KV++RI+
Sbjct: 63  YKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDASLQDLEEKQYSKREAILKVQQRIQ 122

Query: 122 SLKLGMTNA 131
           S + G   A
Sbjct: 123 SHQAGKAKA 131

[Close]

BLAST of Spg011955 vs. TAIR 10
Match: AT1G29990.1 (prefoldin 6 )

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-26
Identity = 63/130 (48.46%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MSSFTIIKELQRDLKMKGRDLRNLQKGKHRNFDLPLSFFALTVRLSLLNPELDMLKEDAI 60
           MSS T +++LQRDL+ K  DL  +QK   +N  L   +        L+  ELD+L+EDA 
Sbjct: 1   MSSST-VRDLQRDLENKANDLGKIQKDIGKNHQLRKKYTIQLGENELVLKELDLLEEDAN 60

Query: 61  VYRLVGPILVKQDLGEPNANVQKRIGHLAAELDRVDAIIGDFEEKQISKREKISKVERRI 120
           VY+L+GP+LVKQDL E NANV+KRI +++AEL R+DAI+ D EEKQ +KRE I K+++R+
Sbjct: 61  VYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKLQQRL 120

Query: 121 RSLKLGMTNA 131
           ++++ G   A
Sbjct: 121 QTIQAGKAKA 129

The following BLAST results are available for this feature:

BLAST of Spg011955 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_006305775.1	7.9e-24	49.23	prefoldin subunit 6 [Capsella rubella] >EOA38673.1 hypothetical protein CARUB_v1...	[more]
XP_010460778.1	7.9e-24	49.23	PREDICTED: prefoldin subunit 6-like [Camelina sativa] >XP_010478374.1 PREDICTED:...	[more]
XP_021626852.1	1.0e-23	50.77	prefoldin subunit 6 [Manihot esculenta]	[more]
XP_010499519.1	1.0e-23	48.46	PREDICTED: prefoldin subunit 6 [Camelina sativa]	[more]
XP_010110983.2	1.4e-23	52.38	prefoldin subunit 6 [Morus notabilis]	[more]

BLAST of Spg011955 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8Y197	3.0e-10	31.07	Probable prefoldin subunit 6 OS=Caenorhabditis briggsae OX=6238 GN=pfd-6 PE=3 SV...	[more]
P52554	5.7e-09	30.10	Probable prefoldin subunit 6 OS=Caenorhabditis elegans OX=6239 GN=pfd-6 PE=2 SV=...	[more]
Q17Q89	1.7e-08	26.45	Prefoldin subunit 6 OS=Bos taurus OX=9913 GN=PFDN6 PE=2 SV=1	[more]
Q5TJE6	2.8e-08	26.45	Prefoldin subunit 6 OS=Canis lupus familiaris OX=9615 GN=PFDN6 PE=3 SV=1	[more]
O15212	2.8e-08	26.45	Prefoldin subunit 6 OS=Homo sapiens OX=9606 GN=PFDN6 PE=1 SV=1	[more]

BLAST of Spg011955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
R0INH2	3.8e-24	49.23	Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10010629mg PE=3 S...	[more]
A0A2C9UYI5	5.0e-24	50.77	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G058500 PE=3 SV=...	[more]
D7KEP4	8.6e-24	48.46	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]
A0A6J1B4T0	1.1e-23	51.16	prefoldin subunit 6 OS=Herrania umbratica OX=108875 GN=LOC110424169 PE=3 SV=1	[more]
A0A061GKX2	1.1e-23	51.16	Prefoldin 6 isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_029496 PE=3 SV=1	[more]

BLAST of Spg011955 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29990.1	3.1e-26	48.46	prefoldin 6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 7..27
None	No IPR available	PANTHER	PTHR21431	PREFOLDIN SUBUNIT 6	coord: 7..125
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 46..115
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 48..115 e-value: 9.6E-9 score: 35.2
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 5..119 e-value: 3.5E-14 score: 54.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011955.1	Spg011955.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016043	cellular component organization
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding