Spg011922 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg011922
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold1: 1998198 .. 1999166 (-)
RNA-Seq ExpressionSpg011922
SyntenySpg011922
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGACAGAGAAGAGAACGTTGAAGAAGTTTCGAACGCAACAATTGAAAAGGAAACCGACGACCTTCGTTTCAGCGAATCGGTAATTGAACCAACGCAAGAATCCGTGGACGCGGCCGAAGAACACAAGAAAGAACAAGAAGAAGATCCGCAAGCGCACGAGGATGATTCGAATAACCTCGCGAAGGAACAAGATGATGATCGCGGAAAGATCGAACAAAACGTGCAACAATTATTCACGAGGTCGAGTAAAGAAAAGGTAAAGATCGCGTTATACGAGTTATACACTGACGAGAAAAAACTGCTGAAGGAGATGCTCCAGTTATGGAATCGCTCAAATCTGGCAGCGTACGAAGATCCGACGAAAGAGGAAAGAGAAAAGAAAATGAAAGAAGGCCGTGTAGTGATCAAGGATCAGGACGAGGACGAGGACGGCTCGAAGAAGCATAAAATTGAAAAAAGCTCTGAATTAGAAGATTCCAGTAGTAGTTCAAGAAAAGGAAAAGAGAAAATGGAATCGGACGAACCTGAAAACGTTATCGATGTGGTGAGATTAATCCGCGACGTTATACTGGAATTCGTTGCGTGGATTTTGCATATAAGTGAGATGGCGAGAGGGAGACTGAAAACCGAAGGGATCTGGACGGCTCATTTCGAGACTGGCGTGGGAGTGATACGGAGTTTGAATGGAATGCTGGAGATATTGAATCTGGAAATGGAAATGATGAGGAAGAAGAAGAAGAAAGAGGATTTTGTGAAGATTCATGAAGTTTTGAGCCAACTTGAGGAGGTTAATGCGGTTTTGGATGGCTCTCCCAACATTGGGATTGTTTCTGAGAGGGACTGTACGGAACTGGAAATCGCCATGTGTGATCGTGAGCTCAAAATGTGCAAGAACACTTTGACTGAGTTGATGACGAGGATTTTGAAAATGCAAAGCGATCGATTTGCTCAGAGATTAGATTAG

mRNA sequence

ATGACAGACAGAGAAGAGAACGTTGAAGAAGTTTCGAACGCAACAATTGAAAAGGAAACCGACGACCTTCGTTTCAGCGAATCGGTAATTGAACCAACGCAAGAATCCGTGGACGCGGCCGAAGAACACAAGAAAGAACAAGAAGAAGATCCGCAAGCGCACGAGGATGATTCGAATAACCTCGCGAAGGAACAAGATGATGATCGCGGAAAGATCGAACAAAACGTGCAACAATTATTCACGAGGTCGAGTAAAGAAAAGGTAAAGATCGCGTTATACGAGTTATACACTGACGAGAAAAAACTGCTGAAGGAGATGCTCCAGTTATGGAATCGCTCAAATCTGGCAGCGTACGAAGATCCGACGAAAGAGGAAAGAGAAAAGAAAATGAAAGAAGGCCGTGTAGTGATCAAGGATCAGGACGAGGACGAGGACGGCTCGAAGAAGCATAAAATTGAAAAAAGCTCTGAATTAGAAGATTCCAGTAGTAGTTCAAGAAAAGGAAAAGAGAAAATGGAATCGGACGAACCTGAAAACGTTATCGATGTGGTGAGATTAATCCGCGACGTTATACTGGAATTCGTTGCGTGGATTTTGCATATAAGTGAGATGGCGAGAGGGAGACTGAAAACCGAAGGGATCTGGACGGCTCATTTCGAGACTGGCGTGGGAGTGATACGGAGTTTGAATGGAATGCTGGAGATATTGAATCTGGAAATGGAAATGATGAGGAAGAAGAAGAAGAAAGAGGATTTTGTGAAGATTCATGAAGTTTTGAGCCAACTTGAGGAGGTTAATGCGGTTTTGGATGGCTCTCCCAACATTGGGATTGTTTCTGAGAGGGACTGTACGGAACTGGAAATCGCCATGTGTGATCGTGAGCTCAAAATGTGCAAGAACACTTTGACTGAGTTGATGACGAGGATTTTGAAAATGCAAAGCGATCGATTTGCTCAGAGATTAGATTAG

Coding sequence (CDS)

ATGACAGACAGAGAAGAGAACGTTGAAGAAGTTTCGAACGCAACAATTGAAAAGGAAACCGACGACCTTCGTTTCAGCGAATCGGTAATTGAACCAACGCAAGAATCCGTGGACGCGGCCGAAGAACACAAGAAAGAACAAGAAGAAGATCCGCAAGCGCACGAGGATGATTCGAATAACCTCGCGAAGGAACAAGATGATGATCGCGGAAAGATCGAACAAAACGTGCAACAATTATTCACGAGGTCGAGTAAAGAAAAGGTAAAGATCGCGTTATACGAGTTATACACTGACGAGAAAAAACTGCTGAAGGAGATGCTCCAGTTATGGAATCGCTCAAATCTGGCAGCGTACGAAGATCCGACGAAAGAGGAAAGAGAAAAGAAAATGAAAGAAGGCCGTGTAGTGATCAAGGATCAGGACGAGGACGAGGACGGCTCGAAGAAGCATAAAATTGAAAAAAGCTCTGAATTAGAAGATTCCAGTAGTAGTTCAAGAAAAGGAAAAGAGAAAATGGAATCGGACGAACCTGAAAACGTTATCGATGTGGTGAGATTAATCCGCGACGTTATACTGGAATTCGTTGCGTGGATTTTGCATATAAGTGAGATGGCGAGAGGGAGACTGAAAACCGAAGGGATCTGGACGGCTCATTTCGAGACTGGCGTGGGAGTGATACGGAGTTTGAATGGAATGCTGGAGATATTGAATCTGGAAATGGAAATGATGAGGAAGAAGAAGAAGAAAGAGGATTTTGTGAAGATTCATGAAGTTTTGAGCCAACTTGAGGAGGTTAATGCGGTTTTGGATGGCTCTCCCAACATTGGGATTGTTTCTGAGAGGGACTGTACGGAACTGGAAATCGCCATGTGTGATCGTGAGCTCAAAATGTGCAAGAACACTTTGACTGAGTTGATGACGAGGATTTTGAAAATGCAAAGCGATCGATTTGCTCAGAGATTAGATTAG

Protein sequence

MTDREENVEEVSNATIEKETDDLRFSESVIEPTQESVDAAEEHKKEQEEDPQAHEDDSNNLAKEQDDDRGKIEQNVQQLFTRSSKEKVKIALYELYTDEKKLLKEMLQLWNRSNLAAYEDPTKEEREKKMKEGRVVIKDQDEDEDGSKKHKIEKSSELEDSSSSSRKGKEKMESDEPENVIDVVRLIRDVILEFVAWILHISEMARGRLKTEGIWTAHFETGVGVIRSLNGMLEILNLEMEMMRKKKKKEDFVKIHEVLSQLEEVNAVLDGSPNIGIVSERDCTELEIAMCDRELKMCKNTLTELMTRILKMQSDRFAQRLD
Homology
[Close]
BLAST of Spg011922 vs. NCBI nr
Match: KAG6594503.1 (hypothetical protein SDJN03_11056, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182.6 bits (462), Expect = 5.5e-42
Identity = 121/286 (42.31%), Postives = 187/286 (65.38%), Query Frame = 0 

Query: 31  EPTQESVDAAEEHKKEQEEDPQAHEDDSNNLAKEQDDDRGKIEQNVQQLFTRSSKEKVKI 90
           E  +ESV AA EH++EQ E+PQ   +D NN+  EQ+D  G+I QN +    RS+ E   I
Sbjct: 4   ESNRESVHAAAEHEQEQ-ENPQ---EDMNNVENEQNDP-GEIVQNEE---VRSTTENQVI 63

Query: 91  ALYELYTDEKKLLKEMLQLWNRSNLAAYEDPTKEEREKKMKEGRVVIKDQDEDEDGSKKH 150
           A+  LY  +KK LK +LQLWNRS+L   EDP  +E E++ KEGR++IKD ++D    +K 
Sbjct: 64  AVQTLYNFKKKHLKTILQLWNRSHLKELEDPKMKEVERRKKEGRLIIKDVEDDGSFDRKK 123

Query: 151 KIEKSSELEDSSSSSRKGKEKMESDEPENVIDVVRLIRDVILEFVAWILHISEMARGRLK 210
           + +++  L +  S+SRKGKEK+   EPE + D + L+R + L F  +I H+ EMA  R +
Sbjct: 124 QKKENKNLFNEFSTSRKGKEKIH--EPEIIFDPLVLLRCITLGFSVYIGHLMEMAIERRR 183

Query: 211 TEGIWTAHFETGVGVIRSLNGMLEILNLEMEMMRKKKK-KEDFVKIHEVLSQLEEVNAVL 270
               W +  E G  ++  +   ++I+N EM  +R++K  +E++VK H +L+QL+E++  +
Sbjct: 184 GAPNWISQLEEGADLLDGVIRKVQIMNDEMRRIRRRKDLREEYVKFHTILTQLDEIDQHM 243

Query: 271 DGSPNIGIVSERDCTELEIAMCDRELKMCKNTLTELMTRILKMQSD 316
           + SPNIGIVSE+DCT+LE+ +C+ ELK CKN   EL++ +LK+  +
Sbjct: 244 EASPNIGIVSEKDCTDLELRVCEHELKCCKNGADELVSEVLKLMKE 279

The following BLAST results are available for this feature:
BLAST of Spg011922 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594503.15.5e-4242.31hypothetical protein SDJN03_11056, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Spg011922 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg011922 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg011922 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 226..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg011922.1Spg011922.1mRNA