Spg011897 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg011897
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase zinc-binding domain
Locationscaffold1: 484634 .. 487489 (-)
RNA-Seq ExpressionSpg011897
SyntenySpg011897
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTGGAGTTGCGCTTTTGCTAGGACGGTGTGGGATGAGTTCTTTGCCTCGTTTGGGTTGCAGTTTGCCAGACCCAGAGGCCTTAGAGAGACGATCGAGGAGTTCCTCCCCCATCCTCCCTTTAGGGAGCAGGGGAAGTTTTTGTGGCAAGCTGGGATTTGTGCCATTATTTGGGGGCTTTGGGGTGAGAGAAACAATAGAACTTTTAGAGGGTTGGAGAGGGATTCTCATGAGGTTTGGTCCCTTGTTAAATATAACGTTTCTCTTTGGGCGTCGGTGACGCGCTTATTTTGTAATTATTCCCTAGGTCTCATCATTTTGGATTGGAGCCCCTTTATCTAATGGGTTCTCTTTCCTTCTTGGGCTAGTTTTTTTTGTATGCCCTTGTATTCTTTCATTTTTTCTCAATGAAAGCATGGTTCTTTATCAAAAAAAAAAAAAAACAAAGGAACCAATATTGTTCTATAAACAAGTCATCTGTTAGGAACCCGAACACTGAAAAACACACTTCAATATATATTGCAACATCAAAAGAAATTACAATATACCAATAGCCTTTCGAGAGGGCTATCTCTCTCCCAAGAGTCCCACAATGGACACTACTACTAAAATTTTCCACACCCCTAAGGCTCCATAAACTTCCCTATTTATAACCCAAGGCATAACCAAGACTCCCTAGCTATTTACTATTATACCCTTACTATCATACTACTACTATTCCCCATTTATATCATACTAGGTACCCTTACATCATCCAATTAGTGTCCTATAAACAAGTGACCAATAACAAACGAACATCAACAAAAAGATTCAGATACAAATAGAATGAGGCAAGAACTGTAGTAGGGATGTAAACTGAACCAAGTTTTCAAAGAAAAAGGGTAATTTGCCTCACATCAGATAGCAAGAGGCATTTGTGTTTTCGTTTTTTACTTTTTGCAACCAGAAATTGGCAGATACAATTGACTAATGGTATAAGTTGTATCATAAAAAGCACCTGACATATGGGCGATATGTGATGCCACCAACAACTTGATTTCGTCTTATAACCATCACTGACTTGTGGTTTCTGCAAGTTAAAATTTAGAGAAAATTACAAAGTGAATAAATGAATAATAATGTGCCAGGAGTATTTAAACGGTATAAGCTCCAGTTGAACAACAATCTAATAATTCATAGCATCACTTCAATACAAATGAGAATTGTGTATAAAGTTGATAGCAGACTTTGTGAGCTATTTTTATACAGATTATAACCCGAATATAATTAGTTTTTGTGTTTTCCGTGCTAGAATTGTACACATGAAATTGAAGACTTGGAGAGATGTTTTGAGAGGAATCAGAGTCTATGTGAATAATAAAGATCTTACGGAAGGATTGGGATCCTCACTCGAGGTGCAACGCCTAGGCACTCCATGGCACCTATAGGACCAATGGGAGGCCAAAAATTCAAGGTGGAAGCACAATAACACAACCATGAAGCGTCATGGCATGAGCAAAAATCAGGCACAAGCCTAGAATCTGAAAGCAAAGTGCCATGGTGCTCACTTATAGAACGTCATGGCACTACAAATTCTAGAGTCTGCCCCTGCATTGGGGGGATTTATTTCTCCTTCTTTCTCTTGGCTTTTTGTAACTTTGTTGTGGAATTTAACAGGAGGCTCGGTAACTTAAATTTGATTATGAGTAGCTATATGTACCTTCGCTAGGAATTGATGTAGCCATGAACTCTATAGATTGATTTTTTTTTTTCTTGATTGAATGAATTTGATTGTTCTATTTATGTTTCTCTGTTCTTCATGTTCGTAATCTACTGGCCACGAGTTAATAGATCATTGACTTAAACAATTAAACTCAAGTGGCTCCAAGAGAGGAAATCAGAATATTAATTTCTTTCCTAGGTGGGGATTTTTTTTAGAGTCCGCGATGGAGCCTCCTAGGGTGCTTTCCGATGATCTCTCAGATGACCTCCGATGAGCTTTCCGACTGGGTTCTGAGTGCTTTGTGAGGGAGTGCCGGGTGTTTTCGGGATCTGGTAGATTTTCCAGAGGGGAGGGTTGGGTTCTTTCTTTCTTTGGTTATCATCGGAGGCCACTGGAGATTATGAGCTAGTATGTCGTCGGCAGCTAGGAGATGTCGAGTTAAGATAGAAAACAAATCCTTCTCATGTAGCTTTGATAGAAATTATAAGGGTAGAGTGGTTAGAATCCAAGAAGATCACTTGAGAAGAAAGTTCGCCCTGTCTGCTGAGGAAATTGTCTTAGTATGGATTGCTGATTCCATAGACGATCTTCTTCTCTCTCCGGCTACTCAAAAGTTTTTTCGAAAGCCAGATTGCACAAATGGGTTCATATGGATTCAGAAAATTTCGAATAAACGAGGAAGTTTTCTTGAAATTACAAAAGTTGTTAACTCAGGTGGGAAAAATAACCTGGTGGTTCCGGCTGGCCCTGAATTTAAAGGTTGGAAGGACTTTTCTAACCTTCTCAAAGACTTCCTTAATGGAAAAGATGATTAGATTGAGCCGTCTAACCTGGTCACACCAAATAGAAGGAGAGATAAGGGAAGGTCCTTTGCTGATATTGTGCGAAGTAAACCGAATGCGCCAAGTGACCTTCAGAAGAAAAAATATTCCAGCGAATGGAGAGACACCCAAGAACGCAAAGGGTGTATAGAAGCCGTGAGGAAAATTGATTGGAACGAGGTTCTGGTGATTACCAAACGAGACCTCCACGATGACTGGGGGAGCATTCTAGAGATTTTGCATCAGCAGCTGGAAGAACCTTTTGTTATAAACCTGATAAGGCCCTTCTTAAATGCCCCTCATAAAAAATGGCTGACTTGCTTTCAATGA

mRNA sequence

ATGTTGTGGAGTTGCGCTTTTGCTAGGACGGTGTGGGATGAGTTCTTTGCCTCGTTTGGGTTGCAGTTTGCCAGACCCAGAGGCCTTAGAGAGACGATCGAGGAGTTCCTCCCCCATCCTCCCTTTAGGGAGCAGGGGAAGTTTTTGTGGCAAGCTGGGATTTGTGCCATTATTTGGGGGCTTTGGGGTGAGAGAAACAATAGAACTTTTAGAGGGTTGGAGAGGGATTCTCATGAGAACGTCATGGCACTACAAATTCTAGAGTCTGCCCCTGCATTGGGGGGATTTATTTCTCCTTCTTTCTCTTGGCTTTTTGTAACTTTGTTGTGGAATTTAACAGGAGGCTCGATTGAGCCGTCTAACCTGGTCACACCAAATAGAAGGAGAGATAAGGGAAGGTCCTTTGCTGATATTGTGCGAAGTAAACCGAATGCGCCAAGTGACCTTCAGAAGAAAAAATATTCCAGCGAATGGAGAGACACCCAAGAACGCAAAGGGTGTATAGAAGCCGTGAGGAAAATTGATTGGAACGAGGTTCTGGTGATTACCAAACGAGACCTCCACGATGACTGGGGGAGCATTCTAGAGATTTTGCATCAGCAGCTGGAAGAACCTTTTGTTATAAACCTGATAAGGCCCTTCTTAAATGCCCCTCATAAAAAATGGCTGACTTGCTTTCAATGA

Coding sequence (CDS)

ATGTTGTGGAGTTGCGCTTTTGCTAGGACGGTGTGGGATGAGTTCTTTGCCTCGTTTGGGTTGCAGTTTGCCAGACCCAGAGGCCTTAGAGAGACGATCGAGGAGTTCCTCCCCCATCCTCCCTTTAGGGAGCAGGGGAAGTTTTTGTGGCAAGCTGGGATTTGTGCCATTATTTGGGGGCTTTGGGGTGAGAGAAACAATAGAACTTTTAGAGGGTTGGAGAGGGATTCTCATGAGAACGTCATGGCACTACAAATTCTAGAGTCTGCCCCTGCATTGGGGGGATTTATTTCTCCTTCTTTCTCTTGGCTTTTTGTAACTTTGTTGTGGAATTTAACAGGAGGCTCGATTGAGCCGTCTAACCTGGTCACACCAAATAGAAGGAGAGATAAGGGAAGGTCCTTTGCTGATATTGTGCGAAGTAAACCGAATGCGCCAAGTGACCTTCAGAAGAAAAAATATTCCAGCGAATGGAGAGACACCCAAGAACGCAAAGGGTGTATAGAAGCCGTGAGGAAAATTGATTGGAACGAGGTTCTGGTGATTACCAAACGAGACCTCCACGATGACTGGGGGAGCATTCTAGAGATTTTGCATCAGCAGCTGGAAGAACCTTTTGTTATAAACCTGATAAGGCCCTTCTTAAATGCCCCTCATAAAAAATGGCTGACTTGCTTTCAATGA

Protein sequence

MLWSCAFARTVWDEFFASFGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDSHENVMALQILESAPALGGFISPSFSWLFVTLLWNLTGGSIEPSNLVTPNRRRDKGRSFADIVRSKPNAPSDLQKKKYSSEWRDTQERKGCIEAVRKIDWNEVLVITKRDLHDDWGSILEILHQQLEEPFVINLIRPFLNAPHKKWLTCFQ
Homology
[Close]
BLAST of Spg011897 vs. NCBI nr
Match: KAA0066908.1 (mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 6.2e-16
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 7   FARTVWDEFFASFGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERN 66
           FAR VW  FF  FG  FA  R +R  IEEFL H PFR++G FLW AG+CA++W +WG+RN
Sbjct: 324 FARVVWSSFFQEFGNSFAGTRSVRAMIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRN 383

Query: 67  NRTFRG 73
           +R  RG
Sbjct: 384 DRVLRG 389

[Close]
BLAST of Spg011897 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-13
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1   MLWSCAFARTVWDEFFASFGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWG 60
           +L   A A  +WD F  +FGL +AR R +R  IEEFL + P  E+G+FLW+A +CAI+W 
Sbjct: 59  LLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVCAILWV 118

Query: 61  LWGERNNRTFRGLERDSHE 80
           LW E N R F G+ER + E
Sbjct: 119 LWDETNRRVFWGVERGTGE 137

[Close]
BLAST of Spg011897 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 1   MLWSCAFARTVWDEFFASFGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWG 60
           +L  C+F     DEF  S     A  R +R   E F+ HPPF+E+G+FLW A +CAI+W 
Sbjct: 286 LLEGCSFREGRRDEFDVS----IAGQRDVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWD 345

Query: 61  LWGERNNRTFRGLERDSHE 80
           +WGERN+R FRG +RD  E
Sbjct: 346 IWGERNDRVFRGKDRDLSE 360

[Close]
BLAST of Spg011897 vs. NCBI nr
Match: KAA0053637.1 (protein RST1 isoform X2 [Cucumis melo var. makuwa] >TYK00806.1 protein RST1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-10
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 16  FASFGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLER 75
           F S   +F   RG+R TIEEFL H PFRE+G  LW  G+C I+W ++G+RN++ F G ER
Sbjct: 842 FGSSSDKFYWVRGVRATIEEFLLHLPFRERGDILWITGVCPILWDIFGKRNDQVFHGRER 901

Query: 76  DSHENVMAL 85
           D H  ++A+
Sbjct: 902 D-HSELLAI 909

[Close]
BLAST of Spg011897 vs. NCBI nr
Match: TYK26833.1 (nardilysin-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 8.7e-10
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 19  FGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDSH 78
           FG+     R +  TIEEFL HP  RE  +F+W AG+CAI+W +WGERN+R FR  E D  
Sbjct: 143 FGVFIVGRRDVLATIEEFLLHPSSRENCRFMWLAGVCAIMWNIWGERNDRVFREKEWDPC 202

Query: 79  ENVMAL 85
           E    L
Sbjct: 203 EETSLL 208

[Close]
BLAST of Spg011897 vs. ExPASy TrEMBL
Match: A0A5A7VGR5 (Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00280 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 7   FARTVWDEFFASFGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERN 66
           FAR VW  FF  FG  FA  R +R  IEEFL H PFR++G FLW AG+CA++W +WG+RN
Sbjct: 324 FARVVWSSFFQEFGNSFAGTRSVRAMIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRN 383

Query: 67  NRTFRG 73
           +R  RG
Sbjct: 384 DRVLRG 389

[Close]
BLAST of Spg011897 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 0 

Query: 1   MLWSCAFARTVWDEFFASFGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWG 60
           +L   A A  +WD F  +FGL +AR R +R  IEEFL + P  E+G+FLW+A +CAI+W 
Sbjct: 59  LLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVCAILWV 118

Query: 61  LWGERNNRTFRGLERDSHE 80
           LW E N R F G+ER + E
Sbjct: 119 LWDETNRRVFWGVERGTGE 137

[Close]
BLAST of Spg011897 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 1   MLWSCAFARTVWDEFFASFGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWG 60
           +L  C+F     DEF  S     A  R +R   E F+ HPPF+E+G+FLW A +CAI+W 
Sbjct: 286 LLEGCSFREGRRDEFDVS----IAGQRDVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWD 345

Query: 61  LWGERNNRTFRGLERDSHE 80
           +WGERN+R FRG +RD  E
Sbjct: 346 IWGERNDRVFRGKDRDLSE 360

[Close]
BLAST of Spg011897 vs. ExPASy TrEMBL
Match: A0A5D3BRC0 (Protein RST1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00070 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 0 

Query: 16  FASFGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLER 75
           F S   +F   RG+R TIEEFL H PFRE+G  LW  G+C I+W ++G+RN++ F G ER
Sbjct: 842 FGSSSDKFYWVRGVRATIEEFLLHLPFRERGDILWITGVCPILWDIFGKRNDQVFHGRER 901

Query: 76  DSHENVMAL 85
           D H  ++A+
Sbjct: 902 D-HSELLAI 909

[Close]
BLAST of Spg011897 vs. ExPASy TrEMBL
Match: A0A5D3DT90 (Nardilysin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00220 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 19  FGLQFARPRGLRETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDSH 78
           FG+     R +  TIEEFL HP  RE  +F+W AG+CAI+W +WGERN+R FR  E D  
Sbjct: 143 FGVFIVGRRDVLATIEEFLLHPSSRENCRFMWLAGVCAIMWNIWGERNDRVFREKEWDPC 202

Query: 79  ENVMAL 85
           E    L
Sbjct: 203 EETSLL 208

The following BLAST results are available for this feature:
BLAST of Spg011897 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066908.16.2e-1657.58mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa][more]
XP_016900613.13.8e-1349.37PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo][more]
TYK19563.13.2e-1248.10uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa][more]
KAA0053637.12.3e-1049.28protein RST1 isoform X2 [Cucumis melo var. makuwa] >TYK00806.1 protein RST1 isof... [more]
TYK26833.18.7e-1050.00nardilysin-like [Cucumis melo var. makuwa][more]
BLAST of Spg011897 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg011897 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VGR53.0e-1657.58Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S4DXB11.8e-1349.37uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=... [more]
A0A5D3D7T21.5e-1248.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BRC01.1e-1049.28Protein RST1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DT904.2e-1050.00Nardilysin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G0022... [more]
BLAST of Spg011897 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg011897.1Spg011897.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0005488 binding
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0016787 hydrolase activity