Spg011558 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg011558
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold8: 12715875 .. 12719192 (-)
RNA-Seq ExpressionSpg011558
SyntenySpg011558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAAGCTGGAGCTAAATATGATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGGTTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTATATTTGGTATGGTCGGAAAGCTTATTCAATTTCCTACAACGTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGATAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGTGTATTTCTGGAAACAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGTAAGTTGTAAAGTGTTCGAAAATGAAGAGTTTGATGTATAGTACATTAATTTTGGTTAATTATTGAGGAAGTTATGGGAGTTCGAAGTTAGGGTATAGAATCTGGAAAATTTGGAAAAGTAGAATGTGAAGTGAGATTTCTTATTCAAGTGTTTAGAATTCATGAGCATGGAAGAATAAGACTATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCAAGTCTACAAACCAGGGAACTAGCTAAGATTGTGAGTGACAAAATGAATTTCGAAAATTTTTTCCAACGATTGTTCATGTTTAGATGTTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCACGTGATTATTGAGTTTCTGAAAAATAGTTGAAACGACATCCTTTTAAGCCAAGCATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTTTTCCTCGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACTTGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCATTGTTGATGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACCTGTGATGTTTTAAGAAAGCTTTTATCATTGCACGTTTATGTTTAACGCCTTGGTTGAGCAGCTTTATACATTTAAAGTTTTATCACGTGTTCTGATTTTCAAATGTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGGTCGAACTCACGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCTAGTACGTGGGTAGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCTATTGTATATATTTTTGGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTTTTTCAGGGCGGCACCTCGTGTATGTTGAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTTTAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGTAGGTGGTTCGGGAGGGGGTGTGACAACTTCCGTTAGTCTTTTCTCTCTACGAATAGATCTGAGTGTCCTAGTAATTTCAAGATCTAAAGGAAACAATTCAACCACCTTATGTCTTCGCATGCAACACTCCCAAACAATCAAAAGAACCAAACAAAAACAAAAATAATATTCACGAGAGAAAATATTTACAACCTAAATTACTATTTATCCCTTTCTTTTTAATGTCAAGAAAAAATTATTTTGCTTAAAAATCAAACCTCCCCGGCAACGGCGCCAAAAACTTGTTGCCAATACCGCAAGTGCACGGGCCACAAGTAATATAAAACGGAAATATTCTGAGTATCGAATCCACAGGGAGGCGAAGCGAAAATTAAGCAAAGCAAAAATTCCTTGAACATTAAAAATACTTGGGAGAAATAATATTTAGGGACCAAAACATGAAATTAAAATGACTTTTAATTTAAAGCAATTAAAGAGTAAAATTGATCAATCAGGGAAAAATAAAATGTGGAGAAAGAGTTTTTAAATGGGAAGTGGGGTCTTGAAACTCAATTAATAGCTAAATAATTATTATAATCAACCTATCTCGTTGCCCAACTAATTATAATCATAGAATCTCCGTTAGTCACATAGGATGTCCTGTCGGTCTCCCCTAATTGTAATTAATCCATTTTAACAACCTAAATGTCCTTAGCGCCATTAAAATTCGTTAATTATTATGCTCTGATTCATTTTAGGAATCTAAGTTTAATCAACTAATCCCGTTGTCACGACGGGCAATTAAAATAGTTGCATGAATTATGATCTATTCTAATTTCTCTTCGTCGAGTCGCCATTAAGAATCAGATCAATATACAATTGGCCAGATTACATATAGCATTACGAGCATCCATACAAATAATTAGTATACAGGGCAAGAGATAGACTATTATAACAACATTTAACTATAATTTCATTTGAAGACCCCAAATTGGGGTTTAGCTATACATAGCTAAAATATTCACAAAACTTACAATGGAAAGCATAAATATGAGCAAAATAAAAGGGAAGGAAATGACCGTCGAAGACCCCGTCGCTGGCGCTTGGAGTCCCTCCGAGCACACCTTGAGCCGCCTAGAGTGCTCCCTAAAACTCCCCAAAAATTTCCCACTAAAGAACTCTCAAAAAGGCTAAGAAGCCTTGAGAGAAGGCTCCAAAGGAGCCAAAGAGAGAAAGGAATGAAATGATGATTGATGGTAAAAAATGGCACCAAGGGGCGCCTTTTATAGGCCCGGAAATGGGACAGCGTCGCGATACTATCGGCATAGCGTTGCGACGCTGTGACGTCAGCCAACTTGTTCGCCAAGAAATGGGACGACGCTGTGCAGATTCCAGAACTGGGCAGGCGCGGATTGGGCTTGAAATTGGGCAACTTCAATTCTTTTTGGACCTCTTCTTCATGGTTGACTTTCTTAGGCTTCCCCTTCACCCATGCATGGAAATTTGGGCTTGGATGGCTCATTTTAGGGCATTTTCCACCAAAAATCCACAAAGTGCTCCTTAG

mRNA sequence

ATGAAGGAAGCTGGAGCTAAATATGATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGGTTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTATATTTGGTATGGTCGGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATAGGTCAAGTCTACAAACCAGGGAACTAGCTAAGATTGTAGAGGTCGAACTCACGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCTAGTACGTGGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGTAGGTGGTTCGGGAGGGGGCCCGGAAATGGGACAGCGTCGCGATACTATCGGCATAGCGTTGCGACGCTGTGACGTCAGCCAACTTGTTCGCCAAGAAATGGGACGACGCTGTGCAGATTCCAGAACTGGGCAGGCGCGGATTGGGCTTGAAATTGGGCAACTTCAATTCTTTTTGGACCTCTTCTTCATGGTTGACTTTCTTAGGCTTCCCCTTCACCCATGCATGGAAATTTGGGCTTGGATGGCTCATTTTAGGGCATTTTCCACCAAAAATCCACAAAGTGCTCCTTAG

Coding sequence (CDS)

ATGAAGGAAGCTGGAGCTAAATATGATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGGTTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTATATTTGGTATGGTCGGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATAGGTCAAGTCTACAAACCAGGGAACTAGCTAAGATTGTAGAGGTCGAACTCACGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCTAGTACGTGGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGTAGGTGGTTCGGGAGGGGGCCCGGAAATGGGACAGCGTCGCGATACTATCGGCATAGCGTTGCGACGCTGTGACGTCAGCCAACTTGTTCGCCAAGAAATGGGACGACGCTGTGCAGATTCCAGAACTGGGCAGGCGCGGATTGGGCTTGAAATTGGGCAACTTCAATTCTTTTTGGACCTCTTCTTCATGGTTGACTTTCTTAGGCTTCCCCTTCACCCATGCATGGAAATTTGGGCTTGGATGGCTCATTTTAGGGCATTTTCCACCAAAAATCCACAAAGTGCTCCTTAG

Protein sequence

MKEAGAKYDEKLMVFEMENRAQGFRAKQEDLWFSLVFRAFWGVQVESEAIFGMVGKLIQFPTTPRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSSTWEGQWVSLEEDDVRWLHAIFRTKLVGGSGGGPEMGQRRDTIGIALRRCDVSQLVRQEMGRRCADSRTGQARIGLEIGQLQFFLDLFFMVDFLRLPLHPCMEIWAWMAHFRAFSTKNPQSAP
Homology
[Close]
BLAST of Spg011558 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 4.4e-14
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 44  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSR 103
           QVESEA+FGMV KLIQ+PTT     PRGNR S QT +L K VE+EL VPDTLPTSAESS 
Sbjct: 112 QVESEALFGMVRKLIQYPTTFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSG 171

Query: 104 SSSSTW 105
           S+SSTW
Sbjct: 172 SNSSTW 177

[Close]
BLAST of Spg011558 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-11
Identity = 55/146 (37.67%), Postives = 68/146 (46.58%), Query Frame = 0 

Query: 64  PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSST-------------------- 123
           PRGNR +L T +L K VE+EL VPDTLPTSAESS+S+SST                    
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 124 --------WEGQWVSLEEDDVRWLHAIFRTKLVGGSGGG---PEMGQRRDTIGIALRRCD 179
                   WEG    +  DD+ WLHA+F  K  G  GGG   P   +RR       +  D
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVMPPRTSRRR------RQNQD 198

[Close]
BLAST of Spg011558 vs. NCBI nr
Match: KAA0037514.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-11
Identity = 48/83 (57.83%), Postives = 52/83 (62.65%), Query Frame = 0 

Query: 44  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVE 103
           QVESEA  G VGKLIQ+PTT     PRGNR SLQTREL K                 +VE
Sbjct: 882 QVESEARLGRVGKLIQYPTTFMKILPRGNRPSLQTRELDKTVIFLLSTLSVLRDNDAVVE 941

Query: 104 VELTVPDTLPTSAESSRSSSSTW 105
           +EL VPDTLPTS ES  S+SSTW
Sbjct: 942 IELPVPDTLPTSVESFGSNSSTW 964

[Close]
BLAST of Spg011558 vs. NCBI nr
Match: TYK01989.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-11
Identity = 48/83 (57.83%), Postives = 52/83 (62.65%), Query Frame = 0 

Query: 44  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVE 103
           QVESEA  G VGKLIQ+PTT     PRGNR SLQTREL K                 +VE
Sbjct: 882 QVESEARLGRVGKLIQYPTTFMKILPRGNRPSLQTRELDKTVIFLLSTLSVLRDNDAVVE 941

Query: 104 VELTVPDTLPTSAESSRSSSSTW 105
           +EL VPDTLPTS ES  S+SSTW
Sbjct: 942 IELPVPDTLPTSVESFGSNSSTW 964

[Close]
BLAST of Spg011558 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 7.8e-11
Identity = 60/149 (40.27%), Postives = 72/149 (48.32%), Query Frame = 0 

Query: 62  TTPRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSST- 121
           T PRGNR SLQT EL K                 +VE+EL +PDTLPTSAESS S+SST 
Sbjct: 121 TWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTL 180

Query: 122 ----WEGQWVS-------LEEDDVRWLHAIFRTKLVGGSGGG---PEMGQRRDTIGIALR 179
               +E   V        +  DDV WLHA+FR K  GG GGG   P   +RR       +
Sbjct: 181 LELYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVMPPRTSRRR------RQ 240

[Close]
BLAST of Spg011558 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 44  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSR 103
           QVESEA+FGMV KLIQ+PTT     PRGNR S QT +L K VE+EL VPDTLPTSAESS 
Sbjct: 112 QVESEALFGMVRKLIQYPTTFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSG 171

Query: 104 SSSSTW 105
           S+SSTW
Sbjct: 172 SNSSTW 177

[Close]
BLAST of Spg011558 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 55/146 (37.67%), Postives = 68/146 (46.58%), Query Frame = 0 

Query: 64  PRGNRSSLQTRELAKIVEVELTVPDTLPTSAESSRSSSST-------------------- 123
           PRGNR +L T +L K VE+EL VPDTLPTSAESS+S+SST                    
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSD 138

Query: 124 --------WEGQWVSLEEDDVRWLHAIFRTKLVGGSGGG---PEMGQRRDTIGIALRRCD 179
                   WEG    +  DD+ WLHA+F  K  G  GGG   P   +RR       +  D
Sbjct: 139 VRVASYVCWEGSAGIVRGDDLCWLHAVFWAKTAGSPGGGVMPPRTSRRR------RQNQD 198

[Close]
BLAST of Spg011558 vs. ExPASy TrEMBL
Match: A0A5D3BV68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001010 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 48/83 (57.83%), Postives = 52/83 (62.65%), Query Frame = 0 

Query: 44  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVE 103
           QVESEA  G VGKLIQ+PTT     PRGNR SLQTREL K                 +VE
Sbjct: 882 QVESEARLGRVGKLIQYPTTFMKILPRGNRPSLQTRELDKTVIFLLSTLSVLRDNDAVVE 941

Query: 104 VELTVPDTLPTSAESSRSSSSTW 105
           +EL VPDTLPTS ES  S+SSTW
Sbjct: 942 IELPVPDTLPTSVESFGSNSSTW 964

[Close]
BLAST of Spg011558 vs. ExPASy TrEMBL
Match: A0A5A7T223 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G001250 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 48/83 (57.83%), Postives = 52/83 (62.65%), Query Frame = 0 

Query: 44  QVESEAIFGMVGKLIQFPTT-----PRGNRSSLQTRELAK-----------------IVE 103
           QVESEA  G VGKLIQ+PTT     PRGNR SLQTREL K                 +VE
Sbjct: 882 QVESEARLGRVGKLIQYPTTFMKILPRGNRPSLQTRELDKTVIFLLSTLSVLRDNDAVVE 941

Query: 104 VELTVPDTLPTSAESSRSSSSTW 105
           +EL VPDTLPTS ES  S+SSTW
Sbjct: 942 IELPVPDTLPTSVESFGSNSSTW 964

[Close]
BLAST of Spg011558 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-11
Identity = 60/149 (40.27%), Postives = 72/149 (48.32%), Query Frame = 0 

Query: 62  TTPRGNRSSLQTRELAK-----------------IVEVELTVPDTLPTSAESSRSSSST- 121
           T PRGNR SLQT EL K                 +VE+EL +PDTLPTSAESS S+SST 
Sbjct: 121 TWPRGNRPSLQTGELDKTVIFSLSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTL 180

Query: 122 ----WEGQWVS-------LEEDDVRWLHAIFRTKLVGGSGGG---PEMGQRRDTIGIALR 179
               +E   V        +  DDV WLHA+FR K  GG GGG   P   +RR       +
Sbjct: 181 LELYFESVHVEMFGSVGIIRGDDVCWLHAVFRAKTTGGPGGGVMPPRTSRRR------RQ 240

The following BLAST results are available for this feature:
BLAST of Spg011558 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ96965.14.4e-1472.73uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa][more]
KAA0052218.12.7e-1137.67uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0037514.14.6e-1157.83reverse transcriptase [Cucumis melo var. makuwa][more]
TYK01989.14.6e-1157.83reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0042035.17.8e-1140.27DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Spg011558 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg011558 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BET32.1e-1472.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UAH61.3e-1137.67CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3BV682.2e-1157.83Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold80... [more]
A0A5A7T2232.2e-1157.83Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7TKT03.8e-1140.27Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
BLAST of Spg011558 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg011558.1Spg011558.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity