Spg011554 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg011554
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold8: 16127926 .. 16133565 (-)
RNA-Seq ExpressionSpg011554
SyntenySpg011554
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGATGGCTGGATCTTGCAAATGAAAGAAGGATTCAGAGTCATGGACTGGAAAGCGGCAGCTTTCGCCATCGCTTTTGCTTGCTGGTTTGTTGTCGATGGCAGCTTCCTCCCGCCATGCTCGCTGTTCGTAGGTTTTTTGGCACCAAAGCCAACTCCACCAACTTTAAAATTTAGGAGTTTTTGTATCAAGTCAAAAAGCTAGAAGTGATCAATAATACAAATAAGGTGCTTCTCAAATAGTTTATCTTTCAAGTTTATCCTTCAATCCTCAAAAGTTTCTTTCCATAAAAACATACTAAAATGATTGTTTATTTAAAGAAAAAAAGATTATGGATAAAAATAGACCTTTCTTTAAAAGTTGAAAAACCAGAATGAAAAAAATATTAAGAAGCAAATGCCCAAAATGAGATTTGAACTAGGAAAATGATAACGATAGAAACATATATAACACTTTCAAAATTAAACCTCAAAAGAGAAGCAAACCTTGAGGGTAAAAATGTAGGTCGAAATCATCCAAATCTGTCTCCATTTTCACCTTCTGTTTAGCTTTATCGAGACGAATTTTCTTTATCGGATACTCAACTTCTGTAGCAGTAAGATCAAAGATGACAACACGGAAGCTCGAAGATTGGCTTTCGTATCTAAACACGAGAAAGTAACCCACTCCAATGGAGTAAAACTCTACAAAGTTTTGCCAGCCATGATGAAACCACACTTTTCCATTACTTTTTGTCAAACCCACATTCCACTCTTTGCCATCAGCCACCTTAAGACATGTTCGGTTATTAACGAAAGCTTTTTGACCATGTTCTCTTACGAACTTTTTTGGGATTTCCTAAACAGAAAAAATGAAAAACATTTTAGGGTTAAAATAAAGAAAGAGAAATCAAATAACAACAGATATTCATAGAATAATTTTCCTTACAATCTTTTGATTGTTGAGTGCACGGGCAAGAACAACCTTAAAAAAATGGAGATTGTCGAATGCTTTACAGGAACAAACCATGTCGTTTCGTCGTGACTAGAGGAAGCAAGCACTTTTGGAAGAACTTTTAGAGGAAAAAATTAAAAAAGGCTAAATGCCAAAAACATACATCTATATATATATATTAAAAAATAAAAACATATTGTGTATATGTGTATATATATTTATAAAAAAAATTGGGGTCTTACCCCTAAATTCATCCTTTGTTTTTTACTTTTACATGTCTAAATTTGGTCTATATACTTTCAATGTATTTCAAAATAATAATAATAATAAATATTAATTATAAAATGTTGTAAAAAACATTAATTTGTGTTGAAGGAGAAATTTTGACCAATCACAAACGGCCACGTCATTACATGAAATTAATGACGAAATTATAATTAATTAAATTTTGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAAGACAAGGTTGGCCAATTATAAATTCGTAGAGCCAAATTTCTATTTGATCAATTAATTAAAATTAAATTATTTTGATCAAATTAATTAATTTGACCCATTAATTAAAAAATCATTATTTGGATCAAATTTGGGTCTTTTAAATATTTGGGTCATATGGTTTCGGGTCAAATATGAACCAGACCCAAGACTAAATAGTTGAACCCAAGACCAATAAAGCCCAAGCCCAAGTTGTTGGCCCAAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCTTCCATTTTAGGGAGGTCAGAATTTTGAAGTTCCAAGCCAGAGTCAGAGAATTCAGAGAAACTCCATCAAGATTGAAGACTGAAGACTGAAGACTCCTTGAAATCCATAAGTTTCAAAGTGCTGAACACTTCTTGAAGATTGAAGACTCCTTCAAGATTAGAAGACTTCAAGCTCCAAGAATCCATTGAAGCTTCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATCCACACATAAGAGAGAGAATCAGAGGATTAACATTAGAGATTGTACATTCACACGCATACAAATATTAATACAAATATAATATTTGTATTAATATTATACAAATTGGCAAGTGAGTTTCTGAATCGCTTCTACAAATTGGCACGCCCGGTGGGACAATCTCTACCTCTCATCTCTTTCTCTTGCCTAAAGATCCAACCGACGTGATGGCACCAAAGAAAGCTCCCGCGAAGGTTACAACATCGAGCTACTCTTATACGGATCCTGTCACTCGTAGTCGTTCCTAAGGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAACAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGATAACCCGCTGTTCGAATCTGTCATTCCAACATCTAAACAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGTCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGTTGCAAAATCGAGAAACAGCTGAGTCTAGCCAGACCCCTACTGCAGGAAAGAATGATAAGGGGAAGGCGGTCATCCGTGAAGACCAACCACAACACTCCACGTCAATGGCCTCTTTGTCCGTCCAATAACTGCAGGACATGATCATGAATTCCATCAGGGCTCAATATGGTGGACCCACTCAAAGTTCCCTCTTGTATTCCAAACCTTATACAAAGAGGATTGACAATCTGAGACTGCCCTCTAGGTATCAGCCTCCCAAGTTCCAACAGTTTGACGGAAAGGGCAACCCAAAGCAGCACATCGCCCACTTTGTTGAAACCTGTGAGAACGCTGGTACTCGGGGAGATTTACTTGTTAAGCAATTTGTCCGAACACTGAAAGGAAACGCGTTCGATTGGTACACTGACCTGGAGCTTGAGACAATTGACAGTTGGGAACAGATTGAGAGAGAGTTTTTGAATCGCTTCTACAGTACGAGGCGAACAGTTAGTATGACGGAACTCACGAGCACAAAGCAACGGAAGGGTGAGCCAGTCATCGACTACATCAACCGTTGGAGAGCCTTGAGTCTCGACTGTAAAGATAGACTCTTCGAAGTGTCCTCCGTTGAGATGTGCACCCAAGGCATGCACTGGGGACTTCTTTACATCTTACAAGGGATAAAACCTCGGACCTTTGAAGAATTAGCGACTCGCGCTCATGATATGGAGTTGAGCATCGCTAGTAGAGGGAATAAAGATCCCGTAGTCCCAGATACGAGGAAGGAAAAGAAGGAAGTTAAAGGCACTGAGAAAGTGACGAAGAGTGCCACGAAAGGATCCATGGTCGTCAACACGACCCCCGTGAAACTTTCCGCCAAAGGAAGGGAAAACAAAACAAATAAGCGAGTGGAGACAGGCGAAAGACGTCGCCTAACTTTAAAAGAAAGACAGGAAAAGGTTTATCCATTTCCAGATTCCGATGTCCCAGATATGTTGGAACAACTACTAGAGAAGCAATTAATCGAACTCCCTGAATGCAAACGACCGGAAGAGTTAGGAAAAGTTAATGATCCTAACTACTGCAAGTATCACCGAGTCGTTAGCCATCCGGTGGAGAAATGTTTTGTTTTAAAGGAGCTAATTCTTAAATTGGCCCGTGAAAAGAAAATTGAGCTGGACCTTGATGAGATGGCCCAAGCAAATCATGCAACGATAATGGCGAATGTAGGGGATCAAATTCCCCTAATCTTCTCATGTGATTATGAAGAAAGGTTGATTTAGTTTGGCACCCTTGATCCTGTAGTGGTTCGTTTAAAAAAAAAAGCCACAATGAAGGGATCCCAAGAAAAATATGGTTCCATCGAAGATGAGAGCGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAGGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCACTTATTTCGAGATAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGGAAAAAAGAAATCAAGGAGGTCAAAGCATGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGTCGCTTTCTCGATGATGGTTAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGACCCTGCTAGTTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATTCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAGTTCGATGGTACAAACATCCCAACCTCCGTGGCACGCACATGTGCTTCGTGTTGCATGACTATAGGATTTTCCGATGAAGATTTGCTGCTAGGGTCGAAGCCTCACAATAGACCTTTATTCGTCTAGGGATACATCCGAGAACAGAGGGTTAGTTGGATTCTCATCGATGATGGATCAGCTCTCAATATAATGCCTAAGTCAACCATGAAGCAATTAGGCGTCTCGATGGAAGAACTATCAAACAGTAAATTGGTAATTCAAGGTTTCAATCAAGGGGGACAACGAGCGATTGGCATGATACGCCTCGAGCTCATCATTGGGGATTTGAAGGCCGATACTTTGTTTCATGTGATAGATTCCAAGACCACTTATAAGCTGCTATTAGGTCGCCCTTGGATTCATGGCAATGGAGTGATAACTTCTACATTGCACCAGTGTTTTAAATTTTATCAAGATGGCATTAAGAAAGTTGAGGCTGACACTAGCCCATTCACAGAAGCTGAATCCCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACACAAGGGAAGTTATACCTGCAGAAATCCCCTTGATAAAAAAGAATGACAAGCTCAATTTAGAGCCACAAGCAGATGCAAGGAAGGAAGCTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTATAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAATGTTCACCTGTCCTACGATACGTCCCTTTATCTAGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCGAAAAGCATAAAGGTCGGTGACGTTGAAATTCTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAAGCAAGAGGTTAAGAAACCTGAGGATGACCAGATAAAATCGATTTTGCCTGACAAACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAAGATTTTTTATGAAAGATCTGAGCTCTCTACAACACAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGTCCGAGCCAGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGATCTTCGAGCTTCTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTTGA

mRNA sequence

ATGTGTGATGGCTGGATCTTGCAAATGAAAGAAGGATTCAGAGTCATGGACTGGAAAGCGGCAGCTTTCGCCATCGCTTTTGCTTGCTGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGATAACCCGCTGTTCGAATCTGTCATTCCAACATCTAAACAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGTCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCATTTGGCACCCTTGATCCTGTAGTGGTTCGTTTAAAAAAAAAAGCCACAATGAAGGGATCCCAAGAAAAATATGGTTCCATCGAAGATGAGAGCGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAGGCAAAAGCAAAGAGAAGCACTTGAAATCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGACCCTGCTAGTTCCTCGGGAACGGTGGCAGCTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTATAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAATGTTCACCTGTCCTACGATACGTCCCTTTATCTAGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCGAAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGTCCGAGCCAGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGATCTTCGAGCTTCTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTTGA

Coding sequence (CDS)

ATGTGTGATGGCTGGATCTTGCAAATGAAAGAAGGATTCAGAGTCATGGACTGGAAAGCGGCAGCTTTCGCCATCGCTTTTGCTTGCTGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGATAACCCGCTGTTCGAATCTGTCATTCCAACATCTAAACAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGTCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCATTTGGCACCCTTGATCCTGTAGTGGTTCGTTTAAAAAAAAAAGCCACAATGAAGGGATCCCAAGAAAAATATGGTTCCATCGAAGATGAGAGCGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAGGCAAAAGCAAAGAGAAGCACTTGAAATCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGACCCTGCTAGTTCCTCGGGAACGGTGGCAGCTGTTGAGGATGTGAAGGCATCTGACCTGAAAAAGGGTGAAACATCTATAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAATGTTCACCTGTCCTACGATACGTCCCTTTATCTAGGCGTAAAAAGGGTGAATCACCTTTCACTGAATGTCCGAAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGTCCGAGCCAGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGATCTTCGAGCTTCTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCAGTCTTTCAGAGGATAATTGTGAATGAAACAGAGGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTCAGTTTTTTGA

Protein sequence

MCDGWILQMKEGFRVMDWKAAAFAIAFACWISKLIEESSKDKVAVKDNPLFESVIPTSKQPKDTLNPDVMSVMMSDVDQDERMAEMERKLNLLMKAFGTLDPVVVRLKKKATMKGSQEKYGSIEDESEGWTLVVRRKRQKQREALEIVTCHIVDVVEDDDDPASSSGTVAAVEDVKASDLKKGETSISLVKPKVVEDEKCSPVLRYVPLSRRKKGESPFTECPKSIKKKLLKEGYSLPTTRKGLGYKSSEPVRITRKGKAKVADINHITVEEVDDSKEEESVDLRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF
Homology
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BLAST of Spg011554 vs. NCBI nr
Match: KAA0026300.1 (uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 6.6e-27
Identity = 116/387 (29.97%), Postives = 154/387 (39.79%), Query Frame = 0 

Query: 87  ERKLNLLMKAFGTLDPVVVRLKKKATMKGSQEKYGSIEDESEGWTLVVRRKRQKQREALE 146
           E+K+ L ++ FGT +P+VV+  ++  +K SQEK  SIE++ EGWT+          E LE
Sbjct: 242 EKKIELDLEKFGTFEPIVVQFHQEVALKDSQEKERSIEEDDEGWTV---------DENLE 301

Query: 147 IVTCHIVDVVEDDDDP----------------------------------------ASSS 206
           +V CH ++  +++  P                                        ASSS
Sbjct: 302 VVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTIVINALLNSAASSS 361

Query: 207 GTVAAVEDVKASDLK-----------------------------------------KGET 266
             +    +     LK                                         KGE 
Sbjct: 362 CALTITYENAKFYLKHDNIPEVVPIEIPLVNREDNLQLKSITSKEPHKSTGTFNSGKGEV 421

Query: 267 SISLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPK------------------- 314
           S S  K  ++  EK S  P+LRYVPLSRRKKGESPF E P+                   
Sbjct: 422 STSTTKSMILMYEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIKVLKESFTRQLT 481

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BLAST of Spg011554 vs. NCBI nr
Match: TYK21493.1 (uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 6.6e-27
Identity = 116/387 (29.97%), Postives = 154/387 (39.79%), Query Frame = 0 

Query: 87  ERKLNLLMKAFGTLDPVVVRLKKKATMKGSQEKYGSIEDESEGWTLVVRRKRQKQREALE 146
           E+K+ L ++ FGT +P+VV+  ++  +K SQEK  SIE++ EGWT+          E LE
Sbjct: 207 EKKIELDLEKFGTFEPIVVQFHQEVALKDSQEKERSIEEDDEGWTV---------DENLE 266

Query: 147 IVTCHIVDVVEDDDDP----------------------------------------ASSS 206
           +V CH ++  +++  P                                        ASSS
Sbjct: 267 VVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTIVINALLNSAASSS 326

Query: 207 GTVAAVEDVKASDLK-----------------------------------------KGET 266
             +    +     LK                                         KGE 
Sbjct: 327 CALTITYENAKFYLKHDNIPEVVPIEIPLVNREDNLQLKSITSKEPHKSTGTFNSGKGEV 386

Query: 267 SISLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPK------------------- 314
           S S  K  ++  EK S  P+LRYVPLSRRKKGESPF E P+                   
Sbjct: 387 STSTTKSMILMYEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIKVLKESFTRQLT 446

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BLAST of Spg011554 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-26
Identity = 89/233 (38.20%), Postives = 120/233 (51.50%), Query Frame = 0 

Query: 140 KQREALEIVTCHIVDVVEDDDDPASSSGTVAAVEDVKASDLKKGETSISLVKPKVVEDEK 199
           K   + E+V+  +  V  +D+    S  +    + +      K E S +  K  ++ DEK
Sbjct: 161 KNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHKSIGTFHSGKSEASTNTAKSVILMDEK 220

Query: 200 CS--PVLRYVPLSRRKKGESPFTECPKSIK------------------------------ 259
            S  P+LRYVPLSRRKKGESPF E P+ +K                              
Sbjct: 221 TSNPPILRYVPLSRRKKGESPFVESPQGLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKS 280

Query: 260 -------------KKLLKEGYSLPTTRKGLGYKSSEPVRITRKGKAKVADINHITVEEVD 319
                        KKLL+EG+ +P +RKGLGYKS EP+RITRKGK KV D NHITV+EVD
Sbjct: 281 LKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVD 340

Query: 320 DSKEEESVDLRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF 328
             +E+E  + R S F  I P VARA VF+R+ + E + +  Q T++  R S F
Sbjct: 341 SMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAF 393

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BLAST of Spg011554 vs. NCBI nr
Match: KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 9.6e-26
Identity = 85/201 (42.29%), Postives = 113/201 (56.22%), Query Frame = 0 

Query: 140 KQREALEIVTCHIVDVVEDDDDPASSSGTVAAVEDVKASDLKKGETSISLVKPKVVEDEK 199
           K   + E V   I  V  +D+    S  +    + +     +KGE S S  K  ++ DEK
Sbjct: 29  KNDNSPEAVPVEIPLVNREDNLQLKSLASKEPHKSIGTFHSRKGEASTSTTKSMILMDEK 88

Query: 200 CSP--VLRYVPLSRRKKGESPFTECPKSIK-------------KKLLKEGYSLPTTRKGL 259
            S   +LRYVPLSRR+KGESPF + P+ +K             KKLL+EG+ +P +RKG 
Sbjct: 89  TSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGP 148

Query: 260 GYKSSEPVRITRKGKAKVADINHITVEEVDDSKEEESVDLRASVFRHIRPPVARASVFQR 319
           GYKS EP+ I RK K KV D NHITV EVD  +E+E    R S F  IRP V R +VF+R
Sbjct: 149 GYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQRISAFDQIRPHVVRTTVFER 208

Query: 320 IIVNETEEESAQPTNSSTRSS 326
           + V +TE +  Q T+S  + S
Sbjct: 209 LSVTKTERKCHQSTSSLNKRS 229

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BLAST of Spg011554 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-25
Identity = 94/267 (35.21%), Postives = 119/267 (44.57%), Query Frame = 0 

Query: 140  KQREALEIVTCHIVDVVEDDDDPASSSGTVAAVEDVKASDLKKGETSISLVKPKVVEDEK 199
            K    LE++         +D+    S  T    E  +  +  KGE   S  K  +++DE 
Sbjct: 889  KNNNILEVLPAETPLTKGEDNSQLKSLATTEPHESARTFNSGKGEAYTSSTKGMILKDEN 948

Query: 200  C--SPVLRYVPLSRRKKGESPFTECPKSIK------------------------------ 259
               +PVLRYVPLSRRKKGESPF E PK +K                              
Sbjct: 949  AANTPVLRYVPLSRRKKGESPFMESPKGLKVGDIEIIKESFTTPLTKIAKQEVKVDLVEA 1008

Query: 260  -----------------------------------------------KKLLKEGYSLPTT 319
                                                           KKLL+EG+S+P +
Sbjct: 1009 NLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHDRPELSSTQKKLLREGHSIPVS 1068

Query: 320  RKGLGYKSSEPVRITRKGKAKVADINHITVEEVDDSKEEESVDLRASVFRHIRPPVARAS 328
            RKGLGYKS EP+RIT+KGK KV DINHIT+EE D++  +E  + R SVF  IRP VAR  
Sbjct: 1069 RKGLGYKSPEPIRITKKGKEKVVDINHITIEEDDNTDVKEGDNQRISVFDRIRPSVARPV 1128

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BLAST of Spg011554 vs. ExPASy TrEMBL
Match: A0A5A7SJC0 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003090 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.2e-27
Identity = 116/387 (29.97%), Postives = 154/387 (39.79%), Query Frame = 0 

Query: 87  ERKLNLLMKAFGTLDPVVVRLKKKATMKGSQEKYGSIEDESEGWTLVVRRKRQKQREALE 146
           E+K+ L ++ FGT +P+VV+  ++  +K SQEK  SIE++ EGWT+          E LE
Sbjct: 242 EKKIELDLEKFGTFEPIVVQFHQEVALKDSQEKERSIEEDDEGWTV---------DENLE 301

Query: 147 IVTCHIVDVVEDDDDP----------------------------------------ASSS 206
           +V CH ++  +++  P                                        ASSS
Sbjct: 302 VVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTIVINALLNSAASSS 361

Query: 207 GTVAAVEDVKASDLK-----------------------------------------KGET 266
             +    +     LK                                         KGE 
Sbjct: 362 CALTITYENAKFYLKHDNIPEVVPIEIPLVNREDNLQLKSITSKEPHKSTGTFNSGKGEV 421

Query: 267 SISLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPK------------------- 314
           S S  K  ++  EK S  P+LRYVPLSRRKKGESPF E P+                   
Sbjct: 422 STSTTKSMILMYEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIKVLKESFTRQLT 481

[Close]
BLAST of Spg011554 vs. ExPASy TrEMBL
Match: A0A5D3DD54 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00300 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.2e-27
Identity = 116/387 (29.97%), Postives = 154/387 (39.79%), Query Frame = 0 

Query: 87  ERKLNLLMKAFGTLDPVVVRLKKKATMKGSQEKYGSIEDESEGWTLVVRRKRQKQREALE 146
           E+K+ L ++ FGT +P+VV+  ++  +K SQEK  SIE++ EGWT+          E LE
Sbjct: 207 EKKIELDLEKFGTFEPIVVQFHQEVALKDSQEKERSIEEDDEGWTV---------DENLE 266

Query: 147 IVTCHIVDVVEDDDDP----------------------------------------ASSS 206
           +V CH ++  +++  P                                        ASSS
Sbjct: 267 VVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTIVINALLNSAASSS 326

Query: 207 GTVAAVEDVKASDLK-----------------------------------------KGET 266
             +    +     LK                                         KGE 
Sbjct: 327 CALTITYENAKFYLKHDNIPEVVPIEIPLVNREDNLQLKSITSKEPHKSTGTFNSGKGEV 386

Query: 267 SISLVKPKVVEDEKCS--PVLRYVPLSRRKKGESPFTECPK------------------- 314
           S S  K  ++  EK S  P+LRYVPLSRRKKGESPF E P+                   
Sbjct: 387 STSTTKSMILMYEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIKVLKESFTRQLT 446

[Close]
BLAST of Spg011554 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.5e-27
Identity = 89/233 (38.20%), Postives = 120/233 (51.50%), Query Frame = 0 

Query: 140 KQREALEIVTCHIVDVVEDDDDPASSSGTVAAVEDVKASDLKKGETSISLVKPKVVEDEK 199
           K   + E+V+  +  V  +D+    S  +    + +      K E S +  K  ++ DEK
Sbjct: 161 KNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHKSIGTFHSGKSEASTNTAKSVILMDEK 220

Query: 200 CS--PVLRYVPLSRRKKGESPFTECPKSIK------------------------------ 259
            S  P+LRYVPLSRRKKGESPF E P+ +K                              
Sbjct: 221 TSNPPILRYVPLSRRKKGESPFVESPQGLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKS 280

Query: 260 -------------KKLLKEGYSLPTTRKGLGYKSSEPVRITRKGKAKVADINHITVEEVD 319
                        KKLL+EG+ +P +RKGLGYKS EP+RITRKGK KV D NHITV+EVD
Sbjct: 281 LKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVD 340

Query: 320 DSKEEESVDLRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRSSVF 328
             +E+E  + R S F  I P VARA VF+R+ + E + +  Q T++  R S F
Sbjct: 341 SMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAF 393

[Close]
BLAST of Spg011554 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.6e-26
Identity = 85/201 (42.29%), Postives = 113/201 (56.22%), Query Frame = 0 

Query: 140 KQREALEIVTCHIVDVVEDDDDPASSSGTVAAVEDVKASDLKKGETSISLVKPKVVEDEK 199
           K   + E V   I  V  +D+    S  +    + +     +KGE S S  K  ++ DEK
Sbjct: 29  KNDNSPEAVPVEIPLVNREDNLQLKSLASKEPHKSIGTFHSRKGEASTSTTKSMILMDEK 88

Query: 200 CSP--VLRYVPLSRRKKGESPFTECPKSIK-------------KKLLKEGYSLPTTRKGL 259
            S   +LRYVPLSRR+KGESPF + P+ +K             KKLL+EG+ +P +RKG 
Sbjct: 89  TSNPLILRYVPLSRRQKGESPFVKFPQGLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGP 148

Query: 260 GYKSSEPVRITRKGKAKVADINHITVEEVDDSKEEESVDLRASVFRHIRPPVARASVFQR 319
           GYKS EP+ I RK K KV D NHITV EVD  +E+E    R S F  IRP V R +VF+R
Sbjct: 149 GYKSPEPIHIIRKRKKKVIDSNHITVGEVDSMEEKEGGSQRISAFDQIRPHVVRTTVFER 208

Query: 320 IIVNETEEESAQPTNSSTRSS 326
           + V +TE +  Q T+S  + S
Sbjct: 209 LSVTKTERKCHQSTSSLNKRS 229

[Close]
BLAST of Spg011554 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.1e-26
Identity = 89/243 (36.63%), Postives = 120/243 (49.38%), Query Frame = 0 

Query: 140 KQREALEIVTCHIVDVVEDDDDPASSSGTVAAVEDVKASDLKKGETSISLVKPKVVEDEK 199
           K   + E+V+  +  V  +D+    S  +    + +      K E S +  K  ++ DEK
Sbjct: 125 KNDSSPEVVSLEVPLVNREDNLQLKSLASKEPHKSIGTFHSGKSEASTNTAKSVILMDEK 184

Query: 200 CS--PVLRYVPLSRRKKGESPFTECPKSIK------------------------------ 259
            S  P+LRYVPLSRRKKGESPF E P+ +K                              
Sbjct: 185 TSNPPILRYVPLSRRKKGESPFVESPQGLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGY 244

Query: 260 -----------------------KKLLKEGYSLPTTRKGLGYKSSEPVRITRKGKAKVAD 319
                                  KKLL+EG+ +P +RKGLGYKS EP+RITRKGK KV D
Sbjct: 245 DFTTHTDFKSLKIHEQPKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVD 304

Query: 320 INHITVEEVDDSKEEESVDLRASVFRHIRPPVARASVFQRIIVNETEEESAQPTNSSTRS 328
            NHITV+EVD  +E+E  + R S F  I P VARA VF+R+ + E E +  Q T++  + 
Sbjct: 305 SNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAERKDHQSTSNLDQR 364

The following BLAST results are available for this feature:
BLAST of Spg011554 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0026300.16.6e-2729.97uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa][more]
TYK21493.16.6e-2729.97uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa][more]
KAA0055957.11.1e-2638.20uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa][more]
KAA0043405.19.6e-2642.29hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa][more]
XP_031735972.11.2e-2535.21uncharacterized protein LOC116401693 [Cucumis sativus][more]

Pages

BLAST of Spg011554 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg011554 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SJC03.2e-2729.97Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003090... [more]
A0A5D3DD543.2e-2729.97Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00300... [more]
A0A5A7UMY25.5e-2738.20Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7TPR54.6e-2642.29RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DXC76.1e-2636.63Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of Spg011554 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg011554.1Spg011554.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process