Spg011389 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg011389
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionAldo_ket_red domain-containing protein
Locationscaffold8: 12054301 .. 12054648 (+)
RNA-Seq ExpressionSpg011389
SyntenySpg011389
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACACACTTCAATCTTCTTCTCCTTCTCGATTCCAGCTCCACAAGAGTGAAGAGACTGGTCTTTGCTTTCACTTTGTTTTCACCCTCTGGAACAACCTCGTTTTTCCATTTTACTCGTCTGCACAAGGTCTCCACCTCAACTCGTCTCCTTCTATCAATTTTTCTCTTTGCTTTCGCCCTCTGGAACAACCTCAACTCGTCTTCCAAAGTCGTCGTTCTCTCGTTTCTTCACTCTTTTCCCCAGTCCGACCTCACGCTTGCTCGCGATGGTGAACTAGTTAAGATTACATGGGTGTTCCTTCTCCTTAACTGCGTTTGCATTTTGAACGTTGAAGGTTTATGA

mRNA sequence

ATGGCAACACACTTCAATCTTCTTCTCCTTCTCGATTCCAGCTCCACAAGAGTGAAGAGACTGGTCTTTGCTTTCACTTTGTTTTCACCCTCTGGAACAACCTCGTTTTTCCATTTTACTCGTCTGCACAAGGTCTCCACCTCAACTCGTCTCCTTCTATCAATTTTTCTCTTTGCTTTCGCCCTCTGGAACAACCTCAACTCGTCTTCCAAAGTCGTCGTTCTCTCGTTTCTTCACTCTTTTCCCCAGTCCGACCTCACGCTTGCTCGCGATGGTGAACTAGTTAAGATTACATGGGTGTTCCTTCTCCTTAACTGCGTTTGCATTTTGAACGTTGAAGGTTTATGA

Coding sequence (CDS)

ATGGCAACACACTTCAATCTTCTTCTCCTTCTCGATTCCAGCTCCACAAGAGTGAAGAGACTGGTCTTTGCTTTCACTTTGTTTTCACCCTCTGGAACAACCTCGTTTTTCCATTTTACTCGTCTGCACAAGGTCTCCACCTCAACTCGTCTCCTTCTATCAATTTTTCTCTTTGCTTTCGCCCTCTGGAACAACCTCAACTCGTCTTCCAAAGTCGTCGTTCTCTCGTTTCTTCACTCTTTTCCCCAGTCCGACCTCACGCTTGCTCGCGATGGTGAACTAGTTAAGATTACATGGGTGTTCCTTCTCCTTAACTGCGTTTGCATTTTGAACGTTGAAGGTTTATGA

Protein sequence

MATHFNLLLLLDSSSTRVKRLVFAFTLFSPSGTTSFFHFTRLHKVSTSTRLLLSIFLFAFALWNNLNSSSKVVVLSFLHSFPQSDLTLARDGELVKITWVFLLLNCVCILNVEGL
Homology
BLAST of Spg011389 vs. NCBI nr
Match: XP_038902469.1 (uncharacterized membrane protein At1g16860-like [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-10
Identity = 46/79 (58.23%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 21  LVFAFTLFSPSGTTSFFHFTRLHKVSTSTRLL-LSIFLFAFALWNNLNSSSKVVVLSFLH 80
           L     LF    + S F    +H       LL LSIFL AFALWNNLN SSK  + SFLH
Sbjct: 27  LYILIPLFILGFSVSIFVLVVVHNAFFFLSLLFLSIFLSAFALWNNLNFSSKAAINSFLH 86

Query: 81  SFPQSDLTLARDGELVKIT 99
           SFP SDLTLARDG+LVKIT
Sbjct: 87  SFPDSDLTLARDGQLVKIT 105

BLAST of Spg011389 vs. NCBI nr
Match: XP_022147465.1 (uncharacterized membrane protein At1g16860-like [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 51  LLLSIFLFAFALWNNLNSSSKVVVLSFLHSFPQSDLTLARDGELVKIT 99
           LLLSI L AFALWNNL+SSS    LSFLHSFP SDL LAR+G+LVKIT
Sbjct: 61  LLLSILLSAFALWNNLDSSSTAAALSFLHSFPDSDLPLAREGQLVKIT 108

BLAST of Spg011389 vs. NCBI nr
Match: XP_022979306.1 (uncharacterized membrane protein At1g16860-like [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 51  LLLSIFLFAFALWNNLNSSSKVVVLSFLHSFPQSDLTLARDGELVKIT 99
           LLL+IFL AFALWN+L  SSK  +LSFLHSFP SDLTLA +G+LVKIT
Sbjct: 58  LLLAIFLSAFALWNSLYFSSKAAMLSFLHSFPDSDLTLACEGQLVKIT 105

BLAST of Spg011389 vs. NCBI nr
Match: XP_023527377.1 (uncharacterized membrane protein At1g16860-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 51  LLLSIFLFAFALWNNLNSSSKVVVLSFLHSFPQSDLTLARDGELVKIT 99
           LLL+IFL AFALWN+L  SSK  +LSFLHSFP SDLTLA +G+LVKIT
Sbjct: 58  LLLAIFLSAFALWNSLYFSSKAAMLSFLHSFPDSDLTLACEGQLVKIT 105

BLAST of Spg011389 vs. NCBI nr
Match: XP_022924397.1 (uncharacterized membrane protein At1g16860-like [Cucurbita moschata])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 51  LLLSIFLFAFALWNNLNSSSKVVVLSFLHSFPQSDLTLARDGELVKIT 99
           LLL+IFL AFALWN+L  SSK  +LSFLHSFP SDLTLA +G+LVKIT
Sbjct: 58  LLLAIFLSAFALWNSLYFSSKAAMLSFLHSFPDSDLTLACEGQLVKIT 105

BLAST of Spg011389 vs. ExPASy TrEMBL
Match: A0A6J1D088 (uncharacterized membrane protein At1g16860-like OS=Momordica charantia OX=3673 GN=LOC111016384 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 51  LLLSIFLFAFALWNNLNSSSKVVVLSFLHSFPQSDLTLARDGELVKIT 99
           LLLSI L AFALWNNL+SSS    LSFLHSFP SDL LAR+G+LVKIT
Sbjct: 61  LLLSILLSAFALWNNLDSSSTAAALSFLHSFPDSDLPLAREGQLVKIT 108

BLAST of Spg011389 vs. ExPASy TrEMBL
Match: A0A6J1IQE9 (uncharacterized membrane protein At1g16860-like OS=Cucurbita maxima OX=3661 GN=LOC111479071 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 51  LLLSIFLFAFALWNNLNSSSKVVVLSFLHSFPQSDLTLARDGELVKIT 99
           LLL+IFL AFALWN+L  SSK  +LSFLHSFP SDLTLA +G+LVKIT
Sbjct: 58  LLLAIFLSAFALWNSLYFSSKAAMLSFLHSFPDSDLTLACEGQLVKIT 105

BLAST of Spg011389 vs. ExPASy TrEMBL
Match: A0A6J1E8T9 (uncharacterized membrane protein At1g16860-like OS=Cucurbita moschata OX=3662 GN=LOC111431906 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 51  LLLSIFLFAFALWNNLNSSSKVVVLSFLHSFPQSDLTLARDGELVKIT 99
           LLL+IFL AFALWN+L  SSK  +LSFLHSFP SDLTLA +G+LVKIT
Sbjct: 58  LLLAIFLSAFALWNSLYFSSKAAMLSFLHSFPDSDLTLACEGQLVKIT 105

BLAST of Spg011389 vs. ExPASy TrEMBL
Match: A0A0A0L8G1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119250 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 21  LVFAFTLFSPSGTTSFFHFTRLHKVSTSTRLL-LSIFLFAFALWNNLNSSSKVVVLSFLH 80
           L     LF    + S F    +H       LL LSIFL AFALWN+LN SSK  +LSFLH
Sbjct: 29  LYILIPLFILGFSVSIFVLVVVHNAFFFISLLFLSIFLSAFALWNSLNFSSKTAILSFLH 88

Query: 81  SFPQSDLTLARDGELVKIT 99
           S P SDLTLA++G+LVKI+
Sbjct: 89  SLPDSDLTLAQEGQLVKIS 107

BLAST of Spg011389 vs. ExPASy TrEMBL
Match: A0A5D3DB30 (Putative membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00720 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.6e-08
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 21  LVFAFTLFSPSGTTSFFHFTRLHKVSTSTRLL-LSIFLFAFALWNNLNSSSKVVVLSFLH 80
           L     LF    + S F    +H       LL LSIFL  FALWN+LN SSK  +LSFLH
Sbjct: 29  LYILIPLFILGFSVSIFVLVVVHNAFFFISLLFLSIFLSTFALWNSLNFSSKTAILSFLH 88

Query: 81  SFPQSDLTLARDGELVKIT 99
           S P SDLT+AR+G+ VKI+
Sbjct: 89  SLPDSDLTIAREGQFVKIS 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902469.14.4e-1058.23uncharacterized membrane protein At1g16860-like [Benincasa hispida][more]
XP_022147465.12.2e-0977.08uncharacterized membrane protein At1g16860-like [Momordica charantia][more]
XP_022979306.11.1e-0875.00uncharacterized membrane protein At1g16860-like [Cucurbita maxima][more]
XP_023527377.11.1e-0875.00uncharacterized membrane protein At1g16860-like [Cucurbita pepo subsp. pepo][more]
XP_022924397.11.1e-0875.00uncharacterized membrane protein At1g16860-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D0881.1e-0977.08uncharacterized membrane protein At1g16860-like OS=Momordica charantia OX=3673 G... [more]
A0A6J1IQE95.3e-0975.00uncharacterized membrane protein At1g16860-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1E8T95.3e-0975.00uncharacterized membrane protein At1g16860-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0L8G11.5e-0853.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119250 PE=4 SV=1[more]
A0A5D3DB307.6e-0850.63Putative membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg011389.1Spg011389.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane