Spg011320 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011320
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	L10-interacting MYB domain-containing protein-like
Location	scaffold8: 10865921 .. 10867150 (-)
RNA-Seq Expression	Spg011320
Synteny	Spg011320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACGTCTGAATTTGACGCTGAATCGTTGGCTCAAACAAGGAAAAATTGTGGTGCAAATAAGGAAAATTCAATTTTGGAAATTTTGCCTAACGTCGAGACGCTAGGCTGTATTTTGGCAGCATCGAGACACAGCGTTGGGATGCTATGCTCTCGGGTTTTTGGCTTCGATTTAACATTTTCAGAGCGTTGAGAAGTTGTTTTGGAGGGTCTTGACGCTGGGCTTCGGCTCCAAGGGCAATTTGGTCATTTAGGCTCCGATTTTGCTCATTTTAGCCCCGAATTGGCTCCAAACCTTCGCCAAGGACCTATGCACATATTGTACTCATTTTAAAGCATTTTTCACAAGGAAGTCAATAAACATAAGCAAATTGGGAGATTATAAATGTATAACAAATTAGACCTATCAAAGGAACAACTATTTGCTAAGACAGGATATAACTATACTAATGATCAATTGAAAAAACAAGTACAACAATCTTAGACAAGTTTATAAAGATTTCAAAAGTTTGTTGAATTATATTACTGGAAAAGGTTGGGATCCAATGTTGAGAACTGTTACTTTGGAAGAAGAGCAGTGGAGTGGTCTTATTAAGGTATTACTTTATTACTATTATTTTTATTATTTTTAATATTTTTTAACTATTTTATAATAGAATGTTAAATGGTTAAATTTTTATAGGTTAACAAGAGAGCTAAAAAGCTCAAAAAGAGTGGTTGTCCACATTATGAGAAATTGATGAGAATTTATGGAGATACAATGGCAACAGAATCTTATGCTCATCCATCAACAAAAGTTCCATCTGATAGTTCTAGAGATGAAACTAAAACTGAAAGTGATGCTCCTACAAATAGTGAGAGTTATGGTCAAAGTAGCATGAGCAAGAAGTCTAAAAGAAAGAGATGAGCATTGAGAGAGACCATGTCATCTTTTATAGATGCCTATGTAGAAAATTCAAAGAGAAGAAATGACATACTTGAGAAAAGACTTCTCAGTTCTTCATCAATTGATGTTAGTGAGAGTTCATCAAAATCAAAAGATTGTGTTGATGAAGAATTGGACAAATGCTTAGAAATTTTAAATAACTTGGAGGATATTGATGATAAAGCTTATACCAAAGTATTGAAACGTTTGCTCGAGGACAAATCTTGGAGACAAGCATTCCCGTGCATTCCTGAATCAAGGAGGAGAGGATTTATCAATTACCTTTGACTGAAATTAGTTTGT

mRNA sequence

ATGAAAACGTCTGAATTTGACGCTGAATCGTTGGCTCAAACAAGGAAAAATTGTGGTGCAAATAAGGAAAATTCAATTTTGGAAATTTTGCCTAACGTCGAGACGCTAGGCTGTATTTTGGCAGCATCGAGACACAGCGTTGGGATGCTATGCTCTCGGGTTTTTGGCTTCGATTTAACATTTTCAGAGCGTTGGGATCCAATGTTGAGAACTGTTACTTTGGAAGAAGAGCAGTGGAGTGGTCTTATTAAGGTTAACAAGAGAGCTAAAAAGCTCAAAAAGAGTGGTTGTCCACATTATGAGAAATTGATGAGAATTTATGGAGATACAATGGCAACAGAATCTTATGCTCATCCATCAACAAAAGTTCCATCTGATAGTTCTAGAGATGAAACTAAAACTGAAAGTGATGCTCCTACAAATAGTGAGAGTTATGGTCAAAGTAGCATGAGCAAGAAGTCTAAAAGAAAGAGATGA

Coding sequence (CDS)

ATGAAAACGTCTGAATTTGACGCTGAATCGTTGGCTCAAACAAGGAAAAATTGTGGTGCAAATAAGGAAAATTCAATTTTGGAAATTTTGCCTAACGTCGAGACGCTAGGCTGTATTTTGGCAGCATCGAGACACAGCGTTGGGATGCTATGCTCTCGGGTTTTTGGCTTCGATTTAACATTTTCAGAGCGTTGGGATCCAATGTTGAGAACTGTTACTTTGGAAGAAGAGCAGTGGAGTGGTCTTATTAAGGTTAACAAGAGAGCTAAAAAGCTCAAAAAGAGTGGTTGTCCACATTATGAGAAATTGATGAGAATTTATGGAGATACAATGGCAACAGAATCTTATGCTCATCCATCAACAAAAGTTCCATCTGATAGTTCTAGAGATGAAACTAAAACTGAAAGTGATGCTCCTACAAATAGTGAGAGTTATGGTCAAAGTAGCATGAGCAAGAAGTCTAAAAGAAAGAGATGA

Protein sequence

MKTSEFDAESLAQTRKNCGANKENSILEILPNVETLGCILAASRHSVGMLCSRVFGFDLTFSERWDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMATESYAHPSTKVPSDSSRDETKTESDAPTNSESYGQSSMSKKSKRKR

Homology

[Close]

BLAST of Spg011320 vs. NCBI nr
Match: XP_038904553.1 (L10-interacting MYB domain-containing protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMATESYAHPSTKVP 124
           WDP+L T+TLEEEQW+ LIKVNK+ KK KKSGCPHY+KLMRIYGDT+A E +A PS+K+ 
Sbjct: 103 WDPVLGTITLEEEQWTNLIKVNKKVKKFKKSGCPHYDKLMRIYGDTVAAEFHALPSSKLS 162

Query: 125 SDSSRDETKTESDAPTNSESY--------GQSSMSKKSKRKR 159
           SDS  D  KTESD+P  +E Y        GQSSMSKKSKRKR
Sbjct: 163 SDSEYD-NKTESDSPMFNEGYGNNRDENHGQSSMSKKSKRKR 203

[Close]

BLAST of Spg011320 vs. NCBI nr
Match: XP_038904554.1 (L10-interacting MYB domain-containing protein-like isoform X3 [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMATESYAHPSTKVP 124
           WDP+L T+TLEEEQW+ LIKVNK+ KK KKSGCPHY+KLMRIYGDT+A E +A PS+K+ 
Sbjct: 98  WDPVLGTITLEEEQWTNLIKVNKKVKKFKKSGCPHYDKLMRIYGDTVAAEFHALPSSKLS 157

Query: 125 SDSSRDETKTESDAPTNSESY--------GQSSMSKKSKRKR 159
           SDS  D  KTESD+P  +E Y        GQSSMSKKSKRKR
Sbjct: 158 SDSEYD-NKTESDSPMFNEGYGNNRDENHGQSSMSKKSKRKR 198

[Close]

BLAST of Spg011320 vs. NCBI nr
Match: XP_038904552.1 (L10-interacting MYB domain-containing protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMATESYAHPSTKVP 124
           WDP+L T+TLEEEQW+ LIKVNK+ KK KKSGCPHY+KLMRIYGDT+A E +A PS+K+ 
Sbjct: 124 WDPVLGTITLEEEQWTNLIKVNKKVKKFKKSGCPHYDKLMRIYGDTVAAEFHALPSSKLS 183

Query: 125 SDSSRDETKTESDAPTNSESY--------GQSSMSKKSKRKR 159
           SDS  D  KTESD+P  +E Y        GQSSMSKKSKRKR
Sbjct: 184 SDSEYD-NKTESDSPMFNEGYGNNRDENHGQSSMSKKSKRKR 224

[Close]

BLAST of Spg011320 vs. NCBI nr
Match: XP_008443406.1 (PREDICTED: uncharacterized protein LOC103487000 isoform X1 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 9.0e-22
Identity = 69/103 (66.99%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMA-TESYAHPSTKV 124
           WDP+L T+TL E QW+ LIKVNK AKK KKSGCPHY KLM IYGDT+A TE  A PSTK+
Sbjct: 124 WDPVLGTITLGEAQWTNLIKVNKNAKKFKKSGCPHYGKLMGIYGDTIATTELDALPSTKL 183

Query: 125 PSDSSRDETKTESDAPTNSESY--------GQSSMSKKSKRKR 159
            SDS  D  KTESDAP ++E Y        GQSSMSKKSKRKR
Sbjct: 184 SSDSEYD-NKTESDAPMSNEDYGNNRDENHGQSSMSKKSKRKR 225

[Close]

BLAST of Spg011320 vs. NCBI nr
Match: KAA0053762.1 (L10-interacting MYB domain-containing protein-like isoform X2 [Cucumis melo var. makuwa] >TYK25639.1 L10-interacting MYB domain-containing protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 9.0e-22
Identity = 69/103 (66.99%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMA-TESYAHPSTKV 124
           WDP+L T+TL E QW+ LIKVNK AKK KKSGCPHY KLM IYGDT+A TE  A PSTK+
Sbjct: 26  WDPVLGTITLGEAQWTNLIKVNKNAKKFKKSGCPHYGKLMGIYGDTIATTELDALPSTKL 85

Query: 125 PSDSSRDETKTESDAPTNSESY--------GQSSMSKKSKRKR 159
            SDS  D  KTESDAP ++E Y        GQSSMSKKSKRKR
Sbjct: 86  SSDSEYD-NKTESDAPMSNEDYGNNRDENHGQSSMSKKSKRKR 127

[Close]

BLAST of Spg011320 vs. ExPASy TrEMBL
Match: A0A5A7UDA1 (L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007990 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.4e-22
Identity = 69/103 (66.99%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMA-TESYAHPSTKV 124
           WDP+L T+TL E QW+ LIKVNK AKK KKSGCPHY KLM IYGDT+A TE  A PSTK+
Sbjct: 26  WDPVLGTITLGEAQWTNLIKVNKNAKKFKKSGCPHYGKLMGIYGDTIATTELDALPSTKL 85

Query: 125 PSDSSRDETKTESDAPTNSESY--------GQSSMSKKSKRKR 159
            SDS  D  KTESDAP ++E Y        GQSSMSKKSKRKR
Sbjct: 86  SSDSEYD-NKTESDAPMSNEDYGNNRDENHGQSSMSKKSKRKR 127

[Close]

BLAST of Spg011320 vs. ExPASy TrEMBL
Match: A0A1S4DUG7 (L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487000 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.4e-22
Identity = 69/103 (66.99%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMA-TESYAHPSTKV 124
           WDP+L T+TL E QW+ LIKVNK AKK KKSGCPHY KLM IYGDT+A TE  A PSTK+
Sbjct: 98  WDPVLGTITLGEAQWTNLIKVNKNAKKFKKSGCPHYGKLMGIYGDTIATTELDALPSTKL 157

Query: 125 PSDSSRDETKTESDAPTNSESY--------GQSSMSKKSKRKR 159
            SDS  D  KTESDAP ++E Y        GQSSMSKKSKRKR
Sbjct: 158 SSDSEYD-NKTESDAPMSNEDYGNNRDENHGQSSMSKKSKRKR 199

[Close]

BLAST of Spg011320 vs. ExPASy TrEMBL
Match: A0A1S3B8P1 (uncharacterized protein LOC103487000 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487000 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.4e-22
Identity = 69/103 (66.99%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMA-TESYAHPSTKV 124
           WDP+L T+TL E QW+ LIKVNK AKK KKSGCPHY KLM IYGDT+A TE  A PSTK+
Sbjct: 124 WDPVLGTITLGEAQWTNLIKVNKNAKKFKKSGCPHYGKLMGIYGDTIATTELDALPSTKL 183

Query: 125 PSDSSRDETKTESDAPTNSESY--------GQSSMSKKSKRKR 159
            SDS  D  KTESDAP ++E Y        GQSSMSKKSKRKR
Sbjct: 184 SSDSEYD-NKTESDAPMSNEDYGNNRDENHGQSSMSKKSKRKR 225

[Close]

BLAST of Spg011320 vs. ExPASy TrEMBL
Match: A0A5D3BNQ5 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00100 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.1e-16
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMATESYAHPSTKVP 124
           WDP+L T+ LEEEQW+ L KVNKRAKK +KSGCPHYEKL+RI+GDT AT   A PST++ 
Sbjct: 6   WDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACPSTRLI 65

Query: 125 SDSSRDETKTESDAPTNSESYGQSSMSKKSKRK 158
           SDS   E + E+D  +N+    + +   KSK++
Sbjct: 66  SDS---EDENENDVASNTNVGVEENNKGKSKKR 95

[Close]

BLAST of Spg011320 vs. ExPASy TrEMBL
Match: A0A5D3C535 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00490 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.1e-16
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMATESYAHPSTKVP 124
           WDP+L T+ LEEEQW+ L KVNKRAKK +KSGCPHYEKL+RI+GDT AT   A PST++ 
Sbjct: 6   WDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACPSTRLI 65

Query: 125 SDSSRDETKTESDAPTNSESYGQSSMSKKSKRK 158
           SDS   E + E+D  +N+    + +   KSK++
Sbjct: 66  SDS---EDENENDVASNTNVGVEENNKGKSKKR 95

[Close]

BLAST of Spg011320 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 18/53 (33.96%), Postives = 28/53 (52.83%), Query Frame = 0


Query: 65  WDPMLRTVTLEEEQWSGLIKVNKRAKKLKKSGCPHYEKLMRIYGDTMATESYA 118
           WDP  +  T  +E W   +K +   K ++     H+E L  I+GD +AT S+A
Sbjct: 92  WDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFEDLQIIFGDVVATGSFA 144

The following BLAST results are available for this feature:

BLAST of Spg011320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904553.1	1.9e-24	66.67	L10-interacting MYB domain-containing protein-like isoform X2 [Benincasa hispida...	[more]
XP_038904554.1	1.9e-24	66.67	L10-interacting MYB domain-containing protein-like isoform X3 [Benincasa hispida...	[more]
XP_038904552.1	1.9e-24	66.67	L10-interacting MYB domain-containing protein-like isoform X1 [Benincasa hispida...	[more]
XP_008443406.1	9.0e-22	66.99	PREDICTED: uncharacterized protein LOC103487000 isoform X1 [Cucumis melo]	[more]
KAA0053762.1	9.0e-22	66.99	L10-interacting MYB domain-containing protein-like isoform X2 [Cucumis melo var....	[more]

BLAST of Spg011320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg011320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDA1	4.4e-22	66.99	L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo va...	[more]
A0A1S4DUG7	4.4e-22	66.99	L10-interacting MYB domain-containing protein-like isoform X2 OS=Cucumis melo OX...	[more]
A0A1S3B8P1	4.4e-22	66.99	uncharacterized protein LOC103487000 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3BNQ5	6.1e-16	54.84	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]
A0A5D3C535	6.1e-16	54.84	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]

BLAST of Spg011320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	2.4e-04	33.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..158
None	No IPR available	PANTHER	PTHR47584	FAMILY NOT NAMED	coord: 65..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011320.1	Spg011320.1	mRNA