Spg011139 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg011139
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSerine/threonine-protein kinase atg1-like
Locationscaffold4: 27511149 .. 27514000 (-)
RNA-Seq ExpressionSpg011139
SyntenySpg011139
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTAACTTGGTTAATGAGTTTAAGCCGATTAGTCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTGGTAGCTCGTAAAAAGACTTGAAGCAAACAAATATAAATTGTAAATTGAAAGTGTTCAATTTATTTGGGGAATCGTATAATGTATATTGATGCATTATAATATAAAGTTTATGAAACTTTATAATATAATTTTTGAATTAATTTCAAAAATTAATTCTTGAGAGAAAATATTTCAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATAAAATCCCTAAGATTAAATATAGGATATTTAATTGGGTAATTAATTAATCATGGAATTAATTAATTATTTATTAAAATTAGAAACCTTTTCCTATTAGGAAAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATGTGATATTTAATTGGGTAATTAATTAATTATGGAATTAATTAATTATTAAAATTAGATATTGTTCAGATAATAGATTTGAACTTATTCCTACACCTTTTCCTATTAGGAAAAGGTCTTGGCCTTTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGACATCCCATTGTCTCTCCTTCTCTCAGAGATTTCTCCCAAAAGACTCCCACAAGTCTCCTGCTTCAAGAAGTCTTAGAGATATACCGGTGTAGCCGAGTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTCTTCAATCTTATTGGCAAGAAAAGGCGAATTGATCAAGGCTTTCTACAAAAGTAAGTTTTCTACAAAAGTAGTGAAATCCTTGATCACTAGGATCGATCTAGTTGATCTTTTAGCATGTTTATAGCCTATGTACAGCCCATTAAATATATTTTTATTGTTGTAATATTTTGCAAATTGTATTGGTATTTCAATTAGAATCTAAGACTCTGAGTAGGTTCGGTAATACTTTCCGCTGCGTGGGGCTTTTATCCCTTCAATGAGCCCGGAGTGCTTCTTGGCTTTTCATATAACCCACCTACTCAGCCTGTGCTTAATTAATTAGATTCCCTGATTGCCCACAAACAACCTAATTAATTAATTATTTTAATTGCGCCCGCTGCCCCTCATGCTTAGACTGATAAATCCTCAATCTAAATCTAATTAGTTAAATTAGCAATTCGATAAATCCTCAAAATTACTAATTAACTAACTCCATTATCACCGCAAGGCCTGCAATTGTCTAATTAAACTAGGAATTTAAATTTTCTACTTTAATTAAATCAATTTCACCTATGCTCTTAGGCCTATCGGAAGTCTACGCTAGGCTACCGTCAAACTAGCGATGGATCCACCTCAACCTAGTGGCTATCTAAAAATAACAGATAGATCATGCTTGTATTCAATTTAAGAGGCGTCAATTCTTAAACTAACATACAAACAAGATGGTTTAAACAAGAATCATAGGATGCAACATAATCATTCAGAAAAGTCTTAAAAACAGAACGTAAATCTCATGAAAACTGAAATAAACTTACAACCGAGGTTCCGATTACAGCGAACCGCGCTTAGACAGCCATAGACGAGTCAAATCTAAGCCCCAAGGCTTGATTGAACGACCCAAAACAAAAATAAACTAATAACTAAAGAGAAAATACAAAGAAAATCGAGAGCAATCGAAGAGAAATGAAGAAAGAAAGCTGAATTATGACCTAACGGCGGAAAAATTCAGATTTATAACATCGCGCCGGCGTCGGGATGTTAGGCATGGCATCTCGATGCTGGGCCTTCTTTCCACGGGCTTGGGCTTAAACAGCGTCGAGTCACTGCTATTGCAGCATCTCAACGCTAGCTCTTGGGTTTGCCCAAATATGCAATTGTCCTTTTATCCTTTTGGCTCCAATCTCGAGGTCTGAACGCTCCGGTCACGTTCTTTAGCTCCATATCCTCTCGGGAACTCCAAATTAGCCTGTAAACGTCCTAAAACTCCCAAATTAGTGCCCAATTGAAAAATTGGCCTAATTATCCTCTTGTGCTCGAAATCCTACAAAATAAACAATTAAACCATAAAACAAAAACTAATAAGATTAAAATAATGGTAATTAAATAGCACATTTCAGGTGTTATCAACGCTATTGTTGCAAATCACAGTCAATGGGGAGAAGAAGAAACACCTTCTAGGAGTAGTGTCAAGGTCCAAGAAGTCAATCATCTCGAGACACTCTTAGAACGAATGTTAACTATGAACGATATGCTTATGAATCTGACTTTAGGAAATCAAGTTCAAGTTGCAGCCGTGAGTCAAGTTTCAAACCCCATGTGTACTACTTGCAATGAAGAGCACTTTTTTGAAGATTGTCCTCAGAATCAGCTGTAATTTACTTTGTACGTGCACATAATAGAGTAAATCCTTACTCCAACACTTTCAATCCAAAATGGAGACAACACTCTAACTTTTCTTGGTGAGGACAACATGTTAGCACATACAACACACCCCTTTTGTTTGGCAGGGAGGACCACCAGGATTTAATAACCAAACTCAACTGAAGATTACACAACCTTTGCAGCCGATTCATGTGCAACCCCAATCGACCTCAAACTTGGAGAATCGTATGTGGGAACTGATGACTAAGAATGATGCGATAATTCAAAGTCAAACAACTTCCTTGAAGAATCTTGAAACTCAAATTGGGCAGTTAGTTCAGGAGATGAGGAGTAGACCAACAATCACATTGCTACAAATAAATGGTGCACAACAAAGAGAAGGAAAAGAGCATTGCAAAGCCACAACTCTTATAAGCGGATTGTAA

mRNA sequence

ATGCTGGGCCTTCTTTCCACGGGCTTGGGCTTAAACAGCGTCGAGTCACTGCTATTGCAGCATCTCAACGCTAGCTCTTGGGTTTGCCCAAATATGCAATTGTCCTTTTATCCTTTTGGCTCCAATCTCGAGCACATTTCAGGTGTTATCAACGCTATTGTTGCAAATCACAGTCAATGGGGAGAAGAAGAAACACCTTCTAGGAGTAGTGTCAAGGTCCAAGAAGTCAATCATCTCGAGACACTCTTAGAACGAATGTTAACTATGAACGATATGCTTATGAATCTGACTTTAGGAAATCAAGTTCAAGTTGCAGCCCCGATTCATGTGCAACCCCAATCGACCTCAAACTTGGAGAATCGTATGTGGGAACTGATGACTAAGAATGATGCGATAATTCAAAGTCAAACAACTTCCTTGAAGAATCTTGAAACTCAAATTGGGCAGTTAGTTCAGGAGATGAGGAGTAGACCAACAATCACATTGCTACAAATAAATGGTGCACAACAAAGAGAAGGAAAAGAGCATTGCAAAGCCACAACTCTTATAAGCGGATTGTAA

Coding sequence (CDS)

ATGCTGGGCCTTCTTTCCACGGGCTTGGGCTTAAACAGCGTCGAGTCACTGCTATTGCAGCATCTCAACGCTAGCTCTTGGGTTTGCCCAAATATGCAATTGTCCTTTTATCCTTTTGGCTCCAATCTCGAGCACATTTCAGGTGTTATCAACGCTATTGTTGCAAATCACAGTCAATGGGGAGAAGAAGAAACACCTTCTAGGAGTAGTGTCAAGGTCCAAGAAGTCAATCATCTCGAGACACTCTTAGAACGAATGTTAACTATGAACGATATGCTTATGAATCTGACTTTAGGAAATCAAGTTCAAGTTGCAGCCCCGATTCATGTGCAACCCCAATCGACCTCAAACTTGGAGAATCGTATGTGGGAACTGATGACTAAGAATGATGCGATAATTCAAAGTCAAACAACTTCCTTGAAGAATCTTGAAACTCAAATTGGGCAGTTAGTTCAGGAGATGAGGAGTAGACCAACAATCACATTGCTACAAATAAATGGTGCACAACAAAGAGAAGGAAAAGAGCATTGCAAAGCCACAACTCTTATAAGCGGATTGTAA

Protein sequence

MLGLLSTGLGLNSVESLLLQHLNASSWVCPNMQLSFYPFGSNLEHISGVINAIVANHSQWGEEETPSRSSVKVQEVNHLETLLERMLTMNDMLMNLTLGNQVQVAAPIHVQPQSTSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLLQINGAQQREGKEHCKATTLISGL
Homology
BLAST of Spg011139 vs. NCBI nr
Match: XP_023522102.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-13
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = 0

Query: 49  VINAIVANHSQWGE-EETPSRSSVKVQEVNHLETLLERMLTMNDMLMNLTLGNQVQVAAP 108
           ++  I +N+ QW +    P R +  V EV+ L ++  ++ ++ ++L NL LG    + AP
Sbjct: 35  ILERIASNNCQWADVRSNPGRKTRGVLEVDALSSINAQLASVTNILQNLALGQDSMIKAP 94

Query: 109 IH---VQPQSTSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLLQ 168
           +H   V  Q+ +   + + E M KNDA IQSQ  SL+NLE Q+GQL  E+R+RP   L  
Sbjct: 95  VHTAAVINQTAAESCSLIKEYMAKNDAAIQSQQASLRNLEVQVGQLANELRNRPLSKLPA 154

Query: 169 INGAQQREGKEHCKATTLISG 186
                +REG E C+A  L SG
Sbjct: 155 DTEMPKREGMEQCQAIELRSG 175

BLAST of Spg011139 vs. NCBI nr
Match: XP_030494802.1 (uncharacterized protein LOC115710583 [Cannabis sativa])

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-12
Identity = 64/197 (32.49%), Postives = 87/197 (44.16%), Query Frame = 0

Query: 49  VINAIVANHSQWGEEETP-SRSSVKVQEVNHLETLLERMLTMNDMLMNLTLGNQVQVAAP 108
           ++  I +N+ QW     P SR    V EV+ L  L  +M +M ++L N+ +G  VQ AA 
Sbjct: 152 ILERIASNNYQWSTNRAPTSRKVAGVLEVDALTALTAQMASMTNILKNMNMGGSVQPAAT 211

Query: 109 IH---------------------------------------------------------V 168
           I                                                           
Sbjct: 212 IQRAEISCVYCGDGHTFENCPSNPASVCYVGASSSGAEQAQGKQSFPPGFSQQPRPQQPH 271

Query: 169 QPQ--STSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLLQINGA 186
           QPQ   TS+LE+ M + M KNDA+IQSQ  SL+NLE Q+GQL  ++++RP  TL      
Sbjct: 272 QPQGSQTSSLESLMRDYMAKNDAVIQSQAASLQNLEIQLGQLANDLKNRPQGTLPSDTEN 331

BLAST of Spg011139 vs. NCBI nr
Match: XP_030495102.1 (uncharacterized protein LOC115710889 [Cannabis sativa])

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-11
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 107 PIHVQPQSTSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLLQIN 166
           P   Q   TS+LE+ M + MTKNDA+IQSQ  SL+NLE Q+GQL  ++++RP  TL    
Sbjct: 33  PHQPQGSQTSSLESLMRDYMTKNDAVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSDT 92

Query: 167 GAQQREGKEHCKATTLISG 186
              +R+GKEHCKA TL SG
Sbjct: 93  ENPRRDGKEHCKAITLRSG 111

BLAST of Spg011139 vs. NCBI nr
Match: XP_030497888.1 (uncharacterized protein LOC115713544 [Cannabis sativa])

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-11
Identity = 63/202 (31.19%), Postives = 86/202 (42.57%), Query Frame = 0

Query: 49  VINAIVANHSQWGEEETP-SRSSVKVQEVNHLETLLERMLTMNDMLMNLTLGNQVQVAAP 108
           ++  I +N+ QW     P SR    V EV+ L  L  +M +M ++L N+ +G  +Q AA 
Sbjct: 127 ILERIASNNYQWSTNTAPTSRKVAGVLEVDALTALTAQMASMTNILKNMNMGGSIQPAAA 186

Query: 109 IH---------------------------------------------------------- 168
           I                                                           
Sbjct: 187 IQRAEISCVYYGDGHTFENCPSNPTSHHPNFSWGGQGASSSGAQAQGKQSFPLRFSQQPR 246

Query: 169 ----VQPQ--STSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLL 186
                QPQ   TS+LE+ M +  TKNDA+IQSQ  SL+NLE Q+GQL  +++SRP  TL 
Sbjct: 247 PQQPHQPQGSQTSSLESLMRDYTTKNDAVIQSQVASLQNLEIQLGQLANDLKSRPQGTLP 306

BLAST of Spg011139 vs. NCBI nr
Match: XP_030509134.1 (uncharacterized protein LOC115723804 [Cannabis sativa])

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-11
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 107 PIHVQPQSTSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLLQIN 166
           P   Q   TS+LE+ M + M KNDA+IQSQ  SL+NLE Q+GQL  ++++RP  TL    
Sbjct: 112 PYQPQGSQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSDT 171

Query: 167 GAQQREGKEHCKATTLISG 186
              +R+GKEHCKA TL SG
Sbjct: 172 KNPRRDGKEHCKAVTLRSG 190

BLAST of Spg011139 vs. ExPASy TrEMBL
Match: A0A6J1DYG0 (uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025764 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 114 STSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLLQINGAQQREG 173
           + SNLEN M E M + DA+IQSQ  S++N ETQ+GQL  E+++RP  +        +REG
Sbjct: 203 NNSNLENMMKEYMARTDAVIQSQAASMRNFETQLGQLANELKNRPQGSFPXHTELPKREG 262

Query: 174 KEHCKATTLISGL 187
           KE CKA TL SGL
Sbjct: 263 KEQCKAVTLRSGL 275

BLAST of Spg011139 vs. ExPASy TrEMBL
Match: A0A6J1DW02 (uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024897 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 100 NQVQVAAPIHVQPQSTSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPT 159
           NQ     PI     + SNLEN M E M + DA+IQSQ  S++N  TQ+G L  E+++RP 
Sbjct: 419 NQRTQTPPIQ---NNNSNLENMMKEYMARTDAVIQSQAASMRNFGTQLGHLANELKNRPQ 478

Query: 160 ITLLQINGAQQREGKEHCKATTLISGL 187
            +        +REGKE CKA TL SGL
Sbjct: 479 GSFPGHTELPRREGKEQCKAVTLRSGL 502

BLAST of Spg011139 vs. ExPASy TrEMBL
Match: A0A6J1E110 (uncharacterized protein LOC111025424 OS=Momordica charantia OX=3673 GN=LOC111025424 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.2e-08
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 114 STSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLLQINGAQQREG 173
           + SNLEN M E M + DA+IQSQ  S++N ETQ+G L   +++RP  +        + EG
Sbjct: 113 NNSNLENXMKEYMARTDAVIQSQAASMRNFETQLGXLANXLKNRPQGSFXGHTELPKXEG 172

Query: 174 KEHCKATTLISGL 187
           KE CKA TL SGL
Sbjct: 173 KEXCKAVTLRSGL 185

BLAST of Spg011139 vs. ExPASy TrEMBL
Match: A0A6J1DWK1 (uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025053 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 114 STSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLLQINGAQQREG 173
           S ++LEN M + M  NDA +QSQ  SL+NLE Q+GQL  +++SRP   L       +R+ 
Sbjct: 247 SITSLENIMKQYMANNDATVQSQAASLRNLELQVGQLAMDLKSRPVGALPSDTEVPKRDS 306

Query: 174 KEHCKATTLISG 186
           KE C A TL SG
Sbjct: 307 KEQCNALTLRSG 318

BLAST of Spg011139 vs. ExPASy TrEMBL
Match: A0A5B6VWJ0 (Retroelement pol polyprotein-like OS=Gossypium australe OX=47621 GN=EPI10_024080 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 0

Query: 110 VQPQSTSNLENRMWELMTKNDAIIQSQTTSLKNLETQIGQLVQEMRSRPTITLLQINGAQ 169
           VQ +++++LE+ +   M KNDA+IQSQ  +LKNLE Q+GQL  E+R+R    L       
Sbjct: 273 VQAKASNSLESLLKTYMAKNDALIQSQAATLKNLENQVGQLATELRNRLQGALPSDTENP 332

Query: 170 QREGKEHCKATTLIS 185
           +  GKEHCKA TL S
Sbjct: 333 RNLGKEHCKALTLRS 347

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023522102.11.1e-1337.59LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp.... [more]
XP_030494802.12.0e-1232.49uncharacterized protein LOC115710583 [Cannabis sativa][more]
XP_030495102.12.2e-1153.16uncharacterized protein LOC115710889 [Cannabis sativa][more]
XP_030497888.12.9e-1131.19uncharacterized protein LOC115713544 [Cannabis sativa][more]
XP_030509134.13.8e-1151.90uncharacterized protein LOC115723804 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DYG05.9e-1052.05uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DW021.5e-0845.98uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1E1107.2e-0847.95uncharacterized protein LOC111025424 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DWK13.6e-0747.22uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5B6VWJ03.6e-0748.00Retroelement pol polyprotein-like OS=Gossypium australe OX=47621 GN=EPI10_024080... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 133..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg011139.1Spg011139.1mRNA