Spg011086 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011086
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold4: 28431900 .. 28433148 (+)
RNA-Seq Expression	Spg011086
Synteny	Spg011086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTCGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCATAGAGCTAGTAAAAGTTGGTTGTACTGGGCGTGCCCTACACAACGTTGATTTGTCATGTTAGTTAAGATGTTTTATATAATTGATATGGCTTGCTAGATTTTAATGATGTACTTGCGGGTTATTTGAGAAAGCTTCTATTATTTCACGTTTATGTTTAATGCTTTGATTGAACAGATTTATACGTTAAAAGGTTTATCACGTGTTCTGATTTCTGGATTTACAGTTTTAAATTCAGTCACTCACTGGGCTTCATAGCTCACTCTTTCAAAATGTTTTCCCACTTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGTTAAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTATCTGTATTGTAAATGTTTTTGTAAAGATTGAATAATTAACGGTTTGTGTAAGTTCTAGAGGTCGTGGTTGTATAAACCTCAGTTTTATATGTTTTTGTTGTGATATCTAATATCAGGTTATTTTCTAAACCGAGTTATGTCAGGGTTGCACCTCATGTATGTTAAAAGGTTTCCAGGGATTCCGCTATGTTGTGTTTCATGTAGAATATTTTATATCTAAGATTAGTATGTTTATCAGGTTCATCGTTTCAGGAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCAACTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAGTTCCATGGGAAAAGAGACATGGTAGTTAGTGATAAGAAGAATCTAGGAAGTAAATAGTTAGACGTTGAGTCCGTTCAGATAGAACTAGCGAGTATAGTCCAAGTATTGTTAAGAGTGAGTCCAGTCAGGACTAGAATGTGGGTAGAAGTTTAGTATCATGCATCTGAGTTAAATATCTATAGCATGTCTGATGTGTTGATATGTTATAGGAATCATGCCACCACGTACCAACAGATGACGCAGGCAGAATCAGGACGAAACCGGTGAAACTGGAGGAACAGGAGGAATTCTCCCACCATTTTGCTCCCTTCCACGATTCTGTGGATTAA

mRNA sequence

ATGGCTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCATCGTTTCAGGAGGGTCAACAGGAATCATGCCACCACGTACCAACAGATGACGCAGGCAGAATCAGGACGAAACCGGTGAAACTGGAGGAACAGGAGGAATTCTCCCACCATTTTGCTCCCTTCCACGATTCTGTGGATTAA

Coding sequence (CDS)

ATGGCTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCATCGTTTCAGGAGGGTCAACAGGAATCATGCCACCACGTACCAACAGATGACGCAGGCAGAATCAGGACGAAACCGGTGAAACTGGAGGAACAGGAGGAATTCTCCCACCATTTTGCTCCCTTCCACGATTCTGTGGATTAA

Protein sequence

MAEILSPRLYGTVCTQVEIELPVPDTLPTSAESSSFQEGQQESCHHVPTDDAGRIRTKPVKLEEQEEFSHHFAPFHDSVD

Homology

[Close]

BLAST of Spg011086 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.7e-06
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1  MAEILSPRLYGTVCTQVEIELPVPDTLPTSAESS 35
          M EILS RLYGTVCTQV+IELP+PDTLPTSAESS
Sbjct: 1  MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESS 34

[Close]

BLAST of Spg011086 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-05
Identity = 33/51 (64.71%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1  MAEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESS 35
          M EILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS 51

[Close]

BLAST of Spg011086 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-05
Identity = 33/51 (64.71%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1  MAEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESS 35
          M EILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS 51

[Close]

BLAST of Spg011086 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1  MAEILSPRLYGTVCTQVEIELPVPDTLPTSAESS 35
          M EILS RLYGTVCTQV+IELP+PDTLPTSAESS
Sbjct: 1  MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESS 34

[Close]

BLAST of Spg011086 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 33/51 (64.71%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1  MAEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESS 35
          M EILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS 51

[Close]

BLAST of Spg011086 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 33/51 (64.71%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1  MAEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESS 35
          M EILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS 51

The following BLAST results are available for this feature:

BLAST of Spg011086 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062407.1	2.7e-06	88.24	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
TYK27998.1	5.1e-05	64.71	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	5.1e-05	64.71	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Spg011086 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg011086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V638	1.3e-06	88.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DX39	2.5e-05	64.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	2.5e-05	64.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]

BLAST of Spg011086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011086.1	Spg011086.1	mRNA