Spg011045 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg011045
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold4: 27301094 .. 27303258 (-)
RNA-Seq ExpressionSpg011045
SyntenySpg011045
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAACACTTTCGGTGCCAGTGGTTTTAAGGAAGAATCCACCACCACCTAAGGTTATTCCCAACCCATTTTCTTCTCATTTCCCATCAGAATTGCAGAACCATTCGGGAGAGAGCTTGAAGGAAGAAGAAGAGGAAGCTTACTGGAGTTTTGAGGTTGAAGAAGAGAGGGGAAAACTCATGCAAGTGCAACCATGGCAGAATCTTGGTTCAATATGCCCATCTCTGTTTTTTAATTCGGTTTGAGCTACACAAGAAGAATTAAGAGGTGAGGCCTGACTTTCTTGAAGGTTAATTCATTTTCTAACAAATTTCATCAAGAAAGCTTGAATTAGAAGCTCCATTTGGTATGGTTGGAAAGCTTATTCAATTTCTGATAACTTTCAGGCAGACCTCGTGAGCCAAAAATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGCTAGCAGGAAACACGAATCATGAATAGCTGTGTTTGGGGGATTTCTGGACGAATCCGTTGGGACTCTCATTTTCATTCCTTCAAGTAAGTTGTAGAGGGTTCCAAAATGAAGAGTTTGATATAAAGTACTTTAATTTTGGTCAAGTATTGAGGAAGTTATGAGTGTTTGAAGTTAGGGTATTGAATCTGGAAAATTCTGGGAAAAGTGTGAAATGTGATTTTATTTCTAAAGTTTAGAATTCATGAGTATAGAAAGACAAGACTATTTAAGGTTCTGATGCTCGATTTTGCTTTGTTTGACAGGTCAAGAAGGAATAGGCCGAGTCTACAAGCCAGGGAACTATACCAAGGTTGTGAGTGACAAAACAAATTTCGAAAATGATTTCTAAACTGTTATTTATGATTAAATGTCTTAAATGCTTGAATCTGACCTTATGAATAATACACGATTTCTATGAATGGTTTCAAGCATAAGTTTCGAGCTTAGATTTTCTAATGAAATTTATATGTGAGCACGTGATTATTGACTTTCTGGAAAGTAGTTGAAACAATATAATTTTAAGCAAAGTATGTATTAACATGTATTGTTTAAAGATTTTCAGTTTTCCACGAGCAAGCTAAGTAAGCTTGAGTTTTACAAAAGATAAAGATAAGCAGGCATGTTTTAATGTTTTCATGTCATTTTCGGAGACTTCTATTGACTTGATGGCTAAGATATTGAGCCGAGGCTGTATGGTACCGTGTGCACACAGGTTATATTATGTTGTTGACGTTGAGTGTACTCCGTGACAACAATGTTGTCGTGAGTGCTAGGCGAGCCCCACTACATCGTAGAGCAAACGTTGGTTGTACTGGGCGTGTCCTACACAACGTACATTTGTCATGTGTTGCCTTTCCAAAGTAGTTAAAACTATGATATAATTTGACTTTAGAAAACTATGCAAGTGCACATAATCTGCAGTGATAAGTAATTTATCGTATCCACGAGGTTTTGAACCGTCTCACTTTACCTATTTTGCTTAGCCTTTTAGTGATTTCAAGATTGTTAAAATGATTGGGTTTTGAAATAATGCTGGAACAAAAGAAATAACAGAGCAGAAATGTAAAAGGATAAAGAAGACAGATTGGAACAGGCATTGGTTAAGACTTCTGTAATTGTTAAAAAGATGCTCTAGCAATTGTATTGATAAGGCAAACTCTTGTAGTCTTATCAGCAGGATCCTCCCAGAACTCTGAATCTTTTAGAATGTGTTTCAACTCCAATGACGCTCTACCAATTGAGCACTAGGCAACTGGCTATCCCTAACTCAGTCACTAGCGTTCACCAACACATAATGGTCTAGTGTGGTTACAAGCCACACATCCCTTAAATCATCCCTAAAACTAAGAGATGTTATTCATACCGACTAGCCAGGCGGGCAAAAAATTATATTAAACACAACAAGTAATCAAGATGCTCAAAATCAATATCATTTGCTAGATTGTTAAAGAATGACAATTACATAATCCTAACTGATGTGAACCAAGGAACATCTATTGTCATGCCTCAAGGTCCAATTATAAGGTCGATAGCCAAAAAGCTACAACAAGCATTAATCACCTATATTCAAGCTATGGTGAGCTCGACAAAGGACGTTCATGGAGATGTTGGACTATTTCCCTACACTATTTCCAAAGTTGAGATTCGAGATGGAGACACATTAAATGCATCTTGA

mRNA sequence

ATGGAAGAAACACTTTCGGTGCCAGTGGTTTTAAGGAAGAATCCACCACCACCTAAGGTTATTCCCAACCCATTTTCTTCTCATTTCCCATCAGAATTGCAGAACCATTCGGGAGAGAGCTTGAAGGAAGAAGAAGAGGAAGCTTACTGGAGTTTTGAGGTTGAAGAAGAGAGGGGAAAACTCATGCAAGTGCAACCATGGCAGAATCTTGGTCAAGAAGGAATAGGCCGAGTCTACAAGCCAGGGAACTATACCAAGACTTCTATTGACTTGATGGCTAAGATATTGAGCCGAGGCTGTATGGTACCGTGTGCACACAGATTGTTAAAGAATGACAATTACATAATCCTAACTGATGTGAACCAAGGAACATCTATTGTCATGCCTCAAGGTCCAATTATAAGGTCGATAGCCAAAAAGCTACAACAAGCATTAATCACCTATATTCAAGCTATGGTGAGCTCGACAAAGGACGTTCATGGAGATGTTGGACTATTTCCCTACACTATTTCCAAAGTTGAGATTCGAGATGGAGACACATTAAATGCATCTTGA

Coding sequence (CDS)

ATGGAAGAAACACTTTCGGTGCCAGTGGTTTTAAGGAAGAATCCACCACCACCTAAGGTTATTCCCAACCCATTTTCTTCTCATTTCCCATCAGAATTGCAGAACCATTCGGGAGAGAGCTTGAAGGAAGAAGAAGAGGAAGCTTACTGGAGTTTTGAGGTTGAAGAAGAGAGGGGAAAACTCATGCAAGTGCAACCATGGCAGAATCTTGGTCAAGAAGGAATAGGCCGAGTCTACAAGCCAGGGAACTATACCAAGACTTCTATTGACTTGATGGCTAAGATATTGAGCCGAGGCTGTATGGTACCGTGTGCACACAGATTGTTAAAGAATGACAATTACATAATCCTAACTGATGTGAACCAAGGAACATCTATTGTCATGCCTCAAGGTCCAATTATAAGGTCGATAGCCAAAAAGCTACAACAAGCATTAATCACCTATATTCAAGCTATGGTGAGCTCGACAAAGGACGTTCATGGAGATGTTGGACTATTTCCCTACACTATTTCCAAAGTTGAGATTCGAGATGGAGACACATTAAATGCATCTTGA

Protein sequence

MEETLSVPVVLRKNPPPPKVIPNPFSSHFPSELQNHSGESLKEEEEEAYWSFEVEEERGKLMQVQPWQNLGQEGIGRVYKPGNYTKTSIDLMAKILSRGCMVPCAHRLLKNDNYIILTDVNQGTSIVMPQGPIIRSIAKKLQQALITYIQAMVSSTKDVHGDVGLFPYTISKVEIRDGDTLNAS
Homology
[Close]
BLAST of Spg011045 vs. NCBI nr
Match: XP_038900633.1 (uncharacterized protein LOC120087799 [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-10
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 119 DVNQGTSIVMPQGPIIRSIAKKLQQALITYIQAMVSSTKDVHGDVGLFPYTISKVEIRDG 178
           D N+GTSI+M QG IIRS AKKL QALIT+IQAMV+STKD+  DV +  Y + KVE +D 
Sbjct: 95  DANKGTSIIMSQGSIIRSRAKKL-QALITHIQAMVTSTKDIVEDVRVLSYMLCKVEFQDE 154

Query: 179 DTLNA 184
           D LNA
Sbjct: 155 DALNA 158

The following BLAST results are available for this feature:
BLAST of Spg011045 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900633.11.4e-1064.62uncharacterized protein LOC120087799 [Benincasa hispida][more]
BLAST of Spg011045 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg011045 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg011045 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg011045.1Spg011045.1mRNA